Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00318 * 2 1 4 4 C 1.53041 * 109.46162 * 210.00388 * 3 2 1 5 5 C 1.53197 * 109.31441 * 178.62727 * 4 3 2 6 6 N 1.46926 * 108.77238 * 54.63108 * 5 4 3 7 7 S 1.65606 * 120.62885 * 126.37173 * 6 5 4 8 8 O 1.42105 * 106.39894 * 336.45635 * 7 6 5 9 9 O 1.42097 * 106.40137 * 203.53958 * 7 6 5 10 10 N 1.65596 * 107.21755 * 89.99460 * 7 6 5 11 11 C 1.39683 * 119.99943 * 65.00204 * 10 7 6 12 12 C 1.39339 * 119.95179 * 45.00014 * 11 10 7 13 13 C 1.38475 * 120.42415 * 179.72767 * 12 11 10 14 14 C 1.37680 * 120.32623 * 0.27061 * 13 12 11 15 15 C 1.40750 * 119.89825 * 359.97438 * 14 13 12 16 16 C 1.41405 * 120.21365 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99864 * 204.46399 * 16 15 14 18 18 C 1.39925 * 120.00036 * 24.46694 * 16 15 14 19 19 N 1.30827 * 119.99937 * 17.88182 * 18 16 15 20 20 Si 1.86797 * 120.00228 * 197.88710 * 18 16 15 21 21 H 1.48499 * 109.47497 * 94.68716 * 20 18 16 22 22 H 1.48497 * 109.47250 * 214.68986 * 20 18 16 23 23 H 1.48506 * 109.47094 * 334.68887 * 20 18 16 24 24 C 1.38283 * 119.95315 * 225.27714 * 11 10 7 25 25 C 1.46917 * 118.74305 * 306.64381 * 6 5 4 26 26 C 1.52760 * 109.01019 * 53.31039 * 25 6 5 27 27 H 1.09005 * 109.47623 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47096 * 300.00458 * 1 2 3 29 29 H 1.09000 * 109.47483 * 59.99537 * 1 2 3 30 30 H 1.08998 * 109.46110 * 329.97222 * 3 2 1 31 31 H 1.09000 * 109.50121 * 58.67252 * 4 3 2 32 32 H 1.09003 * 109.52380 * 298.59248 * 4 3 2 33 33 H 1.08995 * 109.58353 * 294.84732 * 5 4 3 34 34 H 1.09002 * 109.70083 * 174.48905 * 5 4 3 35 35 H 0.96999 * 120.00407 * 244.99901 * 10 7 6 36 36 H 1.08001 * 119.78752 * 359.97438 * 12 11 10 37 37 H 1.08004 * 119.83393 * 180.29845 * 13 12 11 38 38 H 1.08004 * 120.05734 * 179.97438 * 14 13 12 39 39 H 0.97002 * 120.00349 * 180.02562 * 19 18 16 40 40 H 1.07991 * 120.16306 * 359.97438 * 24 11 10 41 41 H 1.09001 * 109.59201 * 173.14487 * 25 6 5 42 42 H 1.09007 * 109.58928 * 293.57423 * 25 6 5 43 43 H 1.09003 * 109.56985 * 185.55604 * 26 25 6 44 44 H 1.09003 * 109.36097 * 65.49698 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3592 1.2629 -0.7216 5 6 3.9634 2.6704 -0.7497 6 7 4.0304 3.1837 0.6254 7 16 5.4576 3.7498 1.2460 8 8 6.4944 3.1329 0.4951 9 8 5.3515 3.6420 2.6589 10 7 5.5326 5.3685 0.9048 11 6 4.6089 6.2464 1.4768 12 6 4.3005 6.1459 2.8319 13 6 3.3904 7.0147 3.4103 14 6 2.7758 7.9846 2.6506 15 6 3.0734 8.0951 1.2794 16 6 2.4456 9.0884 0.4928 17 1 2.3471 8.9502 -0.5738 18 6 1.9521 10.2504 1.0963 19 7 2.3619 10.5916 2.2909 20 14 0.7081 11.3143 0.1963 21 1 -0.6646 10.9317 0.6140 22 1 0.9464 12.7421 0.5274 23 1 0.8536 11.1147 -1.2681 24 6 3.9976 7.2103 0.6962 25 6 2.8086 3.1796 1.4414 26 6 2.2161 1.7716 1.4431 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.3451 1.9991 -0.5143 31 1 3.2149 0.9085 -1.7422 32 1 4.0334 0.5881 -0.1941 33 1 3.3358 3.3253 -1.3540 34 1 4.9665 2.6313 -1.1745 35 1 6.2180 5.7071 0.3078 36 1 4.7772 5.3880 3.4359 37 1 3.1620 6.9313 4.4626 38 1 2.0664 8.6596 3.1061 39 1 2.0195 11.3969 2.7095 40 1 4.2328 7.2866 -0.3550 41 1 3.0502 3.4741 2.4626 42 1 2.0849 3.8770 1.0193 43 1 1.2582 1.7792 1.9631 44 1 2.9008 1.0921 1.9507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594697126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = -105.142187 kcal Electronic energy + Delta-G solvation = -28363.951950 eV Core-core repulsion = 24407.517066 eV Total energy + Delta-G solvation = -3956.434884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.27709 -38.06900 -36.99337 -36.80899 -35.63155 -34.75942 -32.96274 -31.56866 -31.21040 -29.93769 -27.75184 -26.91177 -25.34355 -23.85015 -23.44581 -21.16542 -21.00329 -20.70300 -19.10258 -18.08359 -17.49650 -17.26661 -16.59196 -15.96273 -15.52443 -15.31930 -15.22522 -15.10819 -14.67978 -14.47267 -14.29824 -13.58140 -13.41317 -13.15763 -13.08596 -12.88122 -12.51215 -12.47250 -12.18048 -11.95316 -11.86635 -11.78098 -11.74411 -11.39598 -11.37612 -11.22333 -11.15423 -10.97661 -10.67044 -10.64241 -10.51283 -10.09510 -9.89610 -9.65763 -9.39546 -9.13387 -9.07576 -7.59765 -7.16777 -6.85330 -4.47150 0.78191 2.69058 2.83065 3.01655 3.03830 3.05811 3.13687 3.55519 3.72513 3.85842 4.48465 4.51111 4.59161 4.75582 4.90170 5.05551 5.11968 5.17603 5.19082 5.28480 5.37128 5.48883 5.51870 5.55562 5.63514 5.80076 5.83886 5.93456 5.99782 6.16544 6.18598 6.31732 6.56640 6.58744 6.84760 6.91732 7.01006 7.03763 7.13632 7.24708 7.60096 7.81752 7.93628 7.98517 8.18569 8.53352 8.78969 8.85048 10.09525 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.003622 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.284736 B = 7729.690794 C = 8977.983591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.090 3.910 4 C -0.126 4.126 5 C 0.122 3.878 6 N -1.001 6.001 7 S 2.787 3.213 8 O -0.990 6.990 9 O -0.967 6.967 10 N -1.061 6.061 11 C 0.154 3.846 12 C -0.266 4.266 13 C -0.089 4.089 14 C -0.167 4.167 15 C 0.120 3.880 16 C -0.463 4.463 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.790 5.790 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.230 4.230 25 C 0.124 3.876 26 C -0.152 4.152 27 H 0.083 0.917 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.414 0.586 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.281 0.719 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.058 -13.128 -4.658 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.032 3.968 4 C -0.165 4.165 5 C -0.003 4.003 6 N -0.841 5.841 7 S 2.797 3.203 8 O -0.974 6.974 9 O -0.950 6.950 10 N -0.814 5.814 11 C 0.060 3.940 12 C -0.288 4.288 13 C -0.108 4.108 14 C -0.187 4.187 15 C 0.117 3.883 16 C -0.493 4.493 17 H 0.096 0.904 18 C -0.141 4.141 19 N -0.415 5.415 20 Si 0.732 3.268 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.253 4.253 25 C -0.002 4.002 26 C -0.191 4.191 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.249 0.751 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.384 -13.717 -3.912 14.461 hybrid contribution -0.761 1.314 -0.842 1.736 sum -3.145 -12.402 -4.754 13.650 Atomic orbital electron populations 1.22773 0.81250 1.02485 1.00076 1.87899 1.19514 1.28094 1.95105 1.22109 0.94727 0.84298 0.95624 1.21920 0.95811 0.97453 1.01347 1.21387 1.02701 0.93907 0.82348 1.58026 1.26557 1.77115 1.22422 1.01911 0.72258 0.72355 0.73779 1.93571 1.55212 1.75148 1.73438 1.93569 1.85967 1.85968 1.29514 1.53405 1.41080 1.25384 1.61534 1.17099 0.91857 0.93356 0.91661 1.21031 1.08417 1.06485 0.92862 1.20576 0.97018 0.95449 0.97767 1.21420 1.02992 0.99292 0.94967 1.17439 0.88420 0.90240 0.92198 1.19565 1.32963 1.01101 0.95629 0.90402 1.25896 0.95399 0.98007 0.94821 1.69825 1.34814 1.22447 1.14432 0.86304 0.80969 0.78718 0.80766 1.19309 1.20271 1.18602 1.20882 1.03320 1.02988 0.98157 1.21342 0.86146 0.96273 0.96426 1.22309 1.01973 0.97510 0.97338 0.89870 0.93957 0.94074 0.91743 0.90142 0.90573 0.91027 0.88580 0.75132 0.85817 0.88780 0.86293 0.90765 0.88637 0.88004 0.90871 0.90565 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.39 -4.38 10.35 -35.23 -0.36 -4.74 16 3 C 0.09 0.98 2.57 -26.69 -0.07 0.91 16 4 C -0.13 -1.34 5.73 -26.61 -0.15 -1.49 16 5 C 0.12 1.41 6.48 -3.71 -0.02 1.38 16 6 N -1.00 -13.99 3.35 -113.77 -0.38 -14.37 16 7 S 2.79 46.06 6.09 -107.50 -0.66 45.41 16 8 O -0.99 -17.39 16.73 -57.17 -0.96 -18.35 16 9 O -0.97 -18.40 13.62 -57.17 -0.78 -19.18 16 10 N -1.06 -18.27 5.82 32.38 0.19 -18.08 16 11 C 0.15 3.19 6.26 -83.85 -0.53 2.66 16 12 C -0.27 -5.76 9.19 -39.08 -0.36 -6.12 16 13 C -0.09 -1.99 10.01 -39.70 -0.40 -2.39 16 14 C -0.17 -4.07 8.70 -38.84 -0.34 -4.41 16 15 C 0.12 2.99 5.57 -106.85 -0.60 2.39 16 16 C -0.46 -11.55 9.05 -37.75 -0.34 -11.89 16 17 H 0.08 1.87 7.91 -52.49 -0.42 1.45 16 18 C 0.08 1.84 5.14 -17.35 -0.09 1.75 16 19 N -0.79 -19.51 10.96 55.55 0.61 -18.90 16 20 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 24 C -0.23 -5.18 9.71 -38.67 -0.38 -5.56 16 25 C 0.12 1.67 6.45 -3.94 -0.03 1.64 16 26 C -0.15 -1.76 5.68 -26.83 -0.15 -1.91 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.33 7.84 -51.93 -0.41 -0.08 16 29 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.06 0.65 7.79 -51.93 -0.40 0.25 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.08 6.92 -51.93 -0.36 0.72 16 35 H 0.41 6.22 8.95 -34.47 -0.31 5.91 16 36 H 0.12 2.66 5.56 -52.49 -0.29 2.37 16 37 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.12 3.01 6.15 -52.48 -0.32 2.68 16 39 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 40 H 0.10 2.03 8.06 -52.49 -0.42 1.60 16 41 H 0.10 1.51 6.91 -51.93 -0.36 1.15 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -29.59 366.40 -10.41 -40.00 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.21 Total: 11.63 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -2.35 Total: -21.67 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.42 Total: -51.35 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -2.10 Total: -42.27 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Atomic # 16 Polarization: 46.06 SS G_CDS: -0.66 Total: 45.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.59 -10.41 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594697126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.138 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds