Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65602 * 119.99612 * 2 1 4 4 O 1.42104 * 106.40175 * 178.81816 * 3 2 1 5 5 O 1.42095 * 106.40656 * 311.73868 * 3 2 1 6 6 C 1.76203 * 107.21635 * 65.28001 * 3 2 1 7 7 C 1.38232 * 120.00096 * 269.72284 * 6 3 2 8 8 C 1.38233 * 120.00056 * 179.76550 * 7 6 3 9 9 C 1.38237 * 119.99630 * 0.51245 * 8 7 6 10 10 C 1.50700 * 119.99539 * 179.72527 * 9 8 7 11 11 N 1.46902 * 109.46968 * 270.01835 * 10 9 8 12 12 C 1.47847 * 110.99806 * 290.84253 * 11 10 9 13 13 C 1.54910 * 104.79731 * 213.63418 * 12 11 10 14 14 C 1.55141 * 101.65063 * 37.07651 * 13 12 11 15 15 O 1.42903 * 110.71198 * 82.72467 * 14 13 12 16 16 C 1.50704 * 110.85338 * 205.89576 * 14 13 12 17 17 H 1.07997 * 120.00287 * 113.68515 * 16 14 13 18 18 C 1.37873 * 119.99762 * 293.67618 * 16 14 13 19 19 N 1.31518 * 119.99983 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00141 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46841 * 60.00471 * 20 18 16 22 22 H 1.48498 * 109.47385 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47126 * 300.00402 * 20 18 16 24 24 C 1.47440 * 110.99936 * 170.00405 * 11 10 9 25 25 C 1.38234 * 120.00392 * 359.74101 * 9 8 7 26 26 C 1.38235 * 119.99720 * 0.02562 * 25 9 8 27 27 H 1.09001 * 109.47007 * 179.72308 * 1 2 3 28 28 H 1.09004 * 109.46963 * 299.72103 * 1 2 3 29 29 H 1.08994 * 109.47567 * 59.72256 * 1 2 3 30 30 H 0.97001 * 120.00384 * 180.28478 * 2 1 3 31 31 H 1.08001 * 119.99701 * 359.97438 * 7 6 3 32 32 H 1.07997 * 119.99829 * 180.22829 * 8 7 6 33 33 H 1.09002 * 109.47610 * 30.01920 * 10 9 8 34 34 H 1.08995 * 109.47303 * 150.01988 * 10 9 8 35 35 H 1.08999 * 110.37304 * 332.46556 * 12 11 10 36 36 H 1.09004 * 110.37228 * 94.81101 * 12 11 10 37 37 H 1.08994 * 110.99404 * 278.97964 * 13 12 11 38 38 H 1.09000 * 111.02006 * 155.17478 * 13 12 11 39 39 H 0.96692 * 113.99339 * 66.40054 * 15 14 13 40 40 H 0.96996 * 119.99717 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.89012 * 242.65694 * 24 11 10 42 42 H 1.09000 * 109.88953 * 3.68546 * 24 11 10 43 43 H 1.07989 * 119.99820 * 179.97438 * 25 9 8 44 44 H 1.07993 * 119.99689 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6739 1.1003 0.0281 5 8 1.7076 2.2355 -1.0171 6 6 1.9441 2.2378 1.5288 7 6 0.8689 3.1010 1.6264 8 6 0.5923 3.7277 2.8271 9 6 1.3973 3.4992 3.9274 10 6 1.0995 4.1872 5.2347 11 7 1.8128 5.4704 5.2864 12 6 3.2721 5.2612 5.3987 13 6 3.7753 6.4416 6.2665 14 6 2.6136 6.6013 7.2823 15 8 2.7502 5.6693 8.3570 16 6 2.5506 8.0123 7.8078 17 1 1.7040 8.6395 7.5708 18 6 3.5737 8.5024 8.5914 19 7 4.6048 7.7386 8.8797 20 14 3.4961 10.2516 9.2422 21 1 2.2872 10.4111 10.0898 22 1 4.7090 10.5330 10.0513 23 1 3.4304 11.2013 8.1025 24 6 1.3645 6.2782 6.4354 25 6 2.4757 2.6400 3.8285 26 6 2.7493 2.0096 2.6290 27 1 -0.3633 -1.0277 -0.0050 28 1 -0.3633 0.5095 0.8925 29 1 -0.3634 0.5181 -0.8874 30 1 1.9500 -0.8400 -0.0042 31 1 0.2429 3.2833 0.7654 32 1 -0.2499 4.3993 2.9042 33 1 0.0270 4.3641 5.3162 34 1 1.4273 3.5558 6.0605 35 1 3.4825 4.3117 5.8908 36 1 3.7365 5.2899 4.4130 37 1 3.8962 7.3435 5.6666 38 1 4.7052 6.1851 6.7741 39 1 3.5202 5.8283 8.9198 40 1 5.3248 8.0836 9.4306 41 1 0.9064 7.2023 6.0829 42 1 0.6471 5.7120 7.0294 43 1 3.1047 2.4619 4.6880 44 1 3.5920 1.3387 2.5517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595559892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = -89.566680 kcal Electronic energy + Delta-G solvation = -27441.620296 eV Core-core repulsion = 23485.860816 eV Total energy + Delta-G solvation = -3955.759479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.69011 -38.18774 -37.44843 -36.06092 -35.34442 -34.95995 -32.29907 -32.11558 -31.16671 -29.38232 -28.14959 -26.37232 -25.83077 -24.13941 -22.97235 -21.84636 -20.17005 -19.81370 -19.52623 -18.25554 -17.74766 -17.19274 -16.58642 -15.91192 -15.65737 -15.15069 -14.95512 -14.81989 -14.57342 -14.19754 -14.12790 -13.97382 -13.65298 -13.45686 -13.20527 -12.97337 -12.55594 -12.31564 -12.28711 -12.22073 -11.94689 -11.93335 -11.68831 -11.37755 -11.31692 -11.22438 -10.96011 -10.82988 -10.58912 -10.52615 -10.38586 -10.00694 -9.94563 -9.40118 -9.22137 -9.11250 -8.65679 -8.16211 -7.78653 -6.25833 -4.33032 0.16262 0.70733 1.23448 2.75777 3.21922 3.26869 3.29668 3.34025 3.59571 4.13705 4.26978 4.57996 4.62917 4.65538 4.77634 4.86053 5.00656 5.04424 5.18185 5.24778 5.33265 5.38235 5.49628 5.55674 5.64501 5.80545 5.88461 5.94655 6.00962 6.06945 6.08568 6.21753 6.32975 6.46177 6.48830 6.53896 6.75597 6.86350 6.99563 7.34058 7.42264 7.54925 7.62527 7.77726 8.07916 8.68014 9.34658 9.45892 10.81550 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029943 B = 0.002250 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.898418 B =12442.331774 C =12599.180388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.123 6.123 3 S 2.699 3.301 4 O -0.961 6.961 5 O -0.959 6.959 6 C -0.685 4.685 7 C -0.025 4.025 8 C -0.123 4.123 9 C -0.004 4.004 10 C 0.077 3.923 11 N -0.523 5.523 12 C 0.041 3.959 13 C -0.132 4.132 14 C 0.237 3.763 15 O -0.593 6.593 16 C -0.533 4.533 17 H 0.062 0.938 18 C 0.070 3.930 19 N -0.900 5.900 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.058 3.942 25 C -0.133 4.133 26 C -0.019 4.019 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.418 0.582 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.384 0.616 40 H 0.268 0.732 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.131 0.869 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 -16.137 -14.053 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.882 5.882 3 S 2.789 3.211 4 O -0.951 6.951 5 O -0.948 6.948 6 C -0.773 4.773 7 C -0.044 4.044 8 C -0.142 4.142 9 C -0.004 4.004 10 C -0.051 4.051 11 N -0.247 5.247 12 C -0.087 4.087 13 C -0.170 4.170 14 C 0.197 3.803 15 O -0.404 6.404 16 C -0.571 4.571 17 H 0.080 0.920 18 C -0.132 4.132 19 N -0.540 5.540 20 Si 0.729 3.271 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.069 4.069 25 C -0.153 4.153 26 C -0.039 4.039 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.252 0.748 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.149 0.851 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.837 -15.638 -15.340 23.265 hybrid contribution 0.669 0.527 2.152 2.314 sum -7.168 -15.111 -13.188 21.299 Atomic orbital electron populations 1.21496 0.78452 1.04206 1.02170 1.55340 1.16209 1.24452 1.92192 1.01711 0.72797 0.72628 0.74007 1.93594 1.30793 1.83416 1.87292 1.93580 1.78603 1.68211 1.54456 1.30655 1.08178 1.17111 1.21373 1.20877 0.93581 0.91981 0.97955 1.21177 1.00816 1.00004 0.92190 1.20308 0.92579 0.91819 0.95744 1.21382 0.99721 0.91593 0.92438 1.63749 1.04792 1.13094 1.43091 1.23128 0.87549 0.98946 0.99043 1.23179 1.00784 0.95621 0.97451 1.19698 0.88796 0.87821 0.84000 1.86057 1.53189 1.56509 1.44614 1.21553 1.05973 0.97670 1.31910 0.91961 1.25012 0.94688 0.98207 0.95313 1.69575 1.09273 1.36889 1.38241 0.86493 0.77506 0.84077 0.78980 1.20096 1.21165 1.20065 1.22876 0.98165 0.96836 0.89050 1.21279 0.97792 0.97965 0.98223 1.20831 0.95922 0.95906 0.91228 0.89956 0.92012 0.91297 0.74820 0.84469 0.84857 0.90003 0.93175 0.94371 0.92062 0.91743 0.90804 0.76384 0.92177 0.89994 0.93350 0.85108 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.14 59.85 0.67 1.07 16 2 N -1.12 -7.32 6.19 -16.63 -0.10 -7.42 16 3 S 2.70 27.99 5.74 -107.50 -0.62 27.37 16 4 O -0.96 -12.57 17.28 -57.17 -0.99 -13.56 16 5 O -0.96 -12.45 16.99 -57.17 -0.97 -13.42 16 6 C -0.68 -7.68 5.95 -39.58 -0.24 -7.92 16 7 C -0.02 -0.27 9.52 -39.59 -0.38 -0.65 16 8 C -0.12 -1.48 9.70 -39.58 -0.38 -1.86 16 9 C 0.00 -0.05 5.09 -104.62 -0.53 -0.58 16 10 C 0.08 1.16 4.72 -4.97 -0.02 1.14 16 11 N -0.52 -9.65 5.15 -232.68 -1.20 -10.85 16 12 C 0.04 0.78 5.60 -2.30 -0.01 0.77 16 13 C -0.13 -2.99 5.67 -24.59 -0.14 -3.13 16 14 C 0.24 5.73 0.85 -89.94 -0.08 5.66 16 15 O -0.59 -15.03 13.09 -35.23 -0.46 -15.50 16 16 C -0.53 -14.01 8.22 -34.44 -0.28 -14.29 16 17 H 0.06 1.62 7.53 -52.49 -0.40 1.22 16 18 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 19 N -0.90 -23.70 10.69 55.43 0.59 -23.11 16 20 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.06 1.21 6.21 -2.83 -0.02 1.19 16 25 C -0.13 -1.71 8.93 -39.58 -0.35 -2.06 16 26 C -0.02 -0.23 9.52 -39.58 -0.38 -0.61 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.35 8.09 -51.93 -0.42 -0.08 16 30 H 0.42 1.88 8.96 -34.47 -0.31 1.57 16 31 H 0.14 1.25 7.61 -52.49 -0.40 0.85 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.08 1.11 7.97 -51.93 -0.41 0.70 16 34 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 35 H 0.04 0.72 6.99 -51.93 -0.36 0.35 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.52 8.04 -51.93 -0.42 1.11 16 38 H 0.07 1.78 7.76 -51.93 -0.40 1.37 16 39 H 0.38 10.02 6.98 45.56 0.32 10.34 16 40 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.08 1.71 7.63 -51.93 -0.40 1.31 16 42 H 0.05 0.99 7.48 -51.93 -0.39 0.60 16 43 H 0.13 1.60 7.48 -52.49 -0.39 1.21 16 44 H 0.14 1.37 7.62 -52.49 -0.40 0.97 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -31.97 371.16 -11.03 -43.00 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.61 Total: 12.01 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -2.24 Total: -19.55 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.71 Total: -41.38 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -2.42 Total: -42.48 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 27.99 SS G_CDS: -0.62 Total: 27.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.97 -11.03 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595559892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.566 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds