Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65602 * 119.99612 * 2 1 4 4 O 1.42104 * 106.40175 * 178.81816 * 3 2 1 5 5 O 1.42095 * 106.40656 * 311.73868 * 3 2 1 6 6 C 1.76203 * 107.21635 * 65.28001 * 3 2 1 7 7 C 1.38232 * 120.00096 * 269.72284 * 6 3 2 8 8 C 1.38233 * 120.00056 * 179.76550 * 7 6 3 9 9 C 1.38237 * 119.99630 * 0.51245 * 8 7 6 10 10 C 1.50700 * 119.99539 * 179.72527 * 9 8 7 11 11 N 1.46902 * 109.46968 * 270.01835 * 10 9 8 12 12 C 1.47847 * 110.99806 * 290.84253 * 11 10 9 13 13 C 1.54910 * 104.79731 * 213.63418 * 12 11 10 14 14 C 1.55141 * 101.65063 * 37.07651 * 13 12 11 15 15 O 1.42903 * 110.71198 * 82.72467 * 14 13 12 16 16 C 1.50704 * 110.85338 * 205.89576 * 14 13 12 17 17 H 1.07997 * 120.00287 * 113.68515 * 16 14 13 18 18 C 1.37873 * 119.99762 * 293.67618 * 16 14 13 19 19 N 1.31518 * 119.99983 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00141 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46841 * 60.00471 * 20 18 16 22 22 H 1.48498 * 109.47385 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47126 * 300.00402 * 20 18 16 24 24 C 1.47440 * 110.99936 * 170.00405 * 11 10 9 25 25 C 1.38234 * 120.00392 * 359.74101 * 9 8 7 26 26 C 1.38235 * 119.99720 * 0.02562 * 25 9 8 27 27 H 1.09001 * 109.47007 * 179.72308 * 1 2 3 28 28 H 1.09004 * 109.46963 * 299.72103 * 1 2 3 29 29 H 1.08994 * 109.47567 * 59.72256 * 1 2 3 30 30 H 0.97001 * 120.00384 * 180.28478 * 2 1 3 31 31 H 1.08001 * 119.99701 * 359.97438 * 7 6 3 32 32 H 1.07997 * 119.99829 * 180.22829 * 8 7 6 33 33 H 1.09002 * 109.47610 * 30.01920 * 10 9 8 34 34 H 1.08995 * 109.47303 * 150.01988 * 10 9 8 35 35 H 1.08999 * 110.37304 * 332.46556 * 12 11 10 36 36 H 1.09004 * 110.37228 * 94.81101 * 12 11 10 37 37 H 1.08994 * 110.99404 * 278.97964 * 13 12 11 38 38 H 1.09000 * 111.02006 * 155.17478 * 13 12 11 39 39 H 0.96692 * 113.99339 * 66.40054 * 15 14 13 40 40 H 0.96996 * 119.99717 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.89012 * 242.65694 * 24 11 10 42 42 H 1.09000 * 109.88953 * 3.68546 * 24 11 10 43 43 H 1.07989 * 119.99820 * 179.97438 * 25 9 8 44 44 H 1.07993 * 119.99689 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6739 1.1003 0.0281 5 8 1.7076 2.2355 -1.0171 6 6 1.9441 2.2378 1.5288 7 6 0.8689 3.1010 1.6264 8 6 0.5923 3.7277 2.8271 9 6 1.3973 3.4992 3.9274 10 6 1.0995 4.1872 5.2347 11 7 1.8128 5.4704 5.2864 12 6 3.2721 5.2612 5.3987 13 6 3.7753 6.4416 6.2665 14 6 2.6136 6.6013 7.2823 15 8 2.7502 5.6693 8.3570 16 6 2.5506 8.0123 7.8078 17 1 1.7040 8.6395 7.5708 18 6 3.5737 8.5024 8.5914 19 7 4.6048 7.7386 8.8797 20 14 3.4961 10.2516 9.2422 21 1 2.2872 10.4111 10.0898 22 1 4.7090 10.5330 10.0513 23 1 3.4304 11.2013 8.1025 24 6 1.3645 6.2782 6.4354 25 6 2.4757 2.6400 3.8285 26 6 2.7493 2.0096 2.6290 27 1 -0.3633 -1.0277 -0.0050 28 1 -0.3633 0.5095 0.8925 29 1 -0.3634 0.5181 -0.8874 30 1 1.9500 -0.8400 -0.0042 31 1 0.2429 3.2833 0.7654 32 1 -0.2499 4.3993 2.9042 33 1 0.0270 4.3641 5.3162 34 1 1.4273 3.5558 6.0605 35 1 3.4825 4.3117 5.8908 36 1 3.7365 5.2899 4.4130 37 1 3.8962 7.3435 5.6666 38 1 4.7052 6.1851 6.7741 39 1 3.5202 5.8283 8.9198 40 1 5.3248 8.0836 9.4306 41 1 0.9064 7.2023 6.0829 42 1 0.6471 5.7120 7.0294 43 1 3.1047 2.4619 4.6880 44 1 3.5920 1.3387 2.5517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595559892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -115.385673 kcal Electronic energy + Delta-G solvation = -27442.739891 eV Core-core repulsion = 23485.860816 eV Total energy + Delta-G solvation = -3956.879075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82324 -39.67299 -38.36827 -36.99044 -36.65472 -35.86618 -34.13504 -33.56525 -32.07540 -30.86950 -29.90197 -27.31796 -26.81221 -25.80461 -23.90779 -22.97843 -21.71812 -21.30859 -20.58300 -19.16530 -19.04912 -18.55591 -17.36920 -17.16674 -16.93803 -16.74338 -16.33852 -15.89909 -15.74449 -15.63043 -15.31390 -15.03143 -14.61792 -14.52620 -14.27550 -13.88148 -13.81922 -13.73868 -13.62951 -13.27754 -13.22535 -13.17508 -13.14506 -12.74521 -12.65723 -12.51717 -12.48127 -12.33829 -12.21146 -12.07838 -11.92364 -11.65542 -11.18485 -10.64937 -10.53077 -10.27638 -10.09719 -10.01306 -9.30001 -8.23747 -6.38248 -0.64868 -0.23005 0.32245 1.41550 1.42101 1.49802 2.01930 2.37248 2.42838 2.75688 3.00825 3.21353 3.30536 3.67248 3.77151 3.86459 3.92982 4.12204 4.26395 4.28154 4.33336 4.36171 4.46927 4.53456 4.57942 4.67543 4.70101 4.75483 4.80870 4.91759 4.97386 5.02903 5.06805 5.10239 5.13825 5.23173 5.45498 5.51168 5.51837 5.78830 5.83471 5.90426 6.11701 6.14171 6.15924 6.66070 7.32417 7.41655 8.81561 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029943 B = 0.002250 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.898418 B =12442.331774 C =12599.180388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.109 6.109 3 S 2.720 3.280 4 O -0.990 6.990 5 O -0.985 6.985 6 C -0.684 4.684 7 C -0.026 4.026 8 C -0.125 4.125 9 C -0.020 4.020 10 C 0.079 3.921 11 N -0.522 5.522 12 C 0.055 3.945 13 C -0.127 4.127 14 C 0.221 3.779 15 O -0.598 6.598 16 C -0.557 4.557 17 H 0.058 0.942 18 C 0.028 3.972 19 N -0.916 5.916 20 Si 0.960 3.040 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.273 1.273 24 C 0.066 3.934 25 C -0.143 4.143 26 C -0.026 4.026 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.429 0.571 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.098 0.902 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.378 0.622 40 H 0.269 0.731 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.131 0.869 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 -16.952 -15.145 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.873 5.873 3 S 2.809 3.191 4 O -0.980 6.980 5 O -0.974 6.974 6 C -0.771 4.771 7 C -0.045 4.045 8 C -0.144 4.144 9 C -0.021 4.021 10 C -0.048 4.048 11 N -0.245 5.245 12 C -0.073 4.073 13 C -0.166 4.166 14 C 0.181 3.819 15 O -0.408 6.408 16 C -0.596 4.596 17 H 0.076 0.924 18 C -0.172 4.172 19 N -0.556 5.556 20 Si 0.786 3.214 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.198 1.198 24 C -0.062 4.062 25 C -0.162 4.162 26 C -0.045 4.045 27 H 0.128 0.872 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.266 0.734 31 H 0.176 0.824 32 H 0.166 0.834 33 H 0.117 0.883 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.149 0.851 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.041 -16.470 -16.438 24.964 hybrid contribution 1.004 0.697 2.450 2.738 sum -8.037 -15.773 -13.988 22.562 Atomic orbital electron populations 1.21782 0.77003 1.06188 1.02494 1.55003 1.17029 1.23523 1.91698 1.00941 0.72027 0.72867 0.73276 1.93551 1.32977 1.83951 1.87542 1.93547 1.78935 1.69583 1.55367 1.30834 1.07923 1.16981 1.21408 1.21153 0.93654 0.91354 0.98332 1.21377 1.00970 1.00070 0.91962 1.20195 0.93694 0.92777 0.95389 1.21407 1.00202 0.89841 0.93378 1.63730 1.04319 1.15008 1.41487 1.22972 0.88158 0.97375 0.98789 1.22995 0.99671 0.96427 0.97462 1.19946 0.90821 0.87000 0.84119 1.86050 1.52844 1.56874 1.45013 1.21864 1.06117 0.98904 1.32671 0.92399 1.25706 0.94412 1.01606 0.95518 1.69663 1.09516 1.38079 1.38336 0.85576 0.77507 0.79968 0.78355 1.19820 1.20747 1.19804 1.22719 0.96738 0.97415 0.89312 1.21368 0.97833 0.98261 0.98765 1.21019 0.96451 0.96062 0.90986 0.87222 0.91414 0.91359 0.73411 0.82434 0.83368 0.88333 0.93912 0.93998 0.90967 0.93258 0.92794 0.77174 0.92118 0.90183 0.93024 0.85098 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.14 127.77 1.42 1.92 16 2 N -1.11 -11.93 6.19 -206.54 -1.28 -13.21 16 3 S 2.72 52.10 5.74 -56.49 -0.32 51.77 16 4 O -0.99 -24.82 17.28 -128.00 -2.21 -27.03 16 5 O -0.98 -24.09 16.99 -128.00 -2.17 -26.26 16 6 C -0.68 -14.09 5.95 22.27 0.13 -13.96 16 7 C -0.03 -0.51 9.52 22.27 0.21 -0.30 16 8 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 9 C -0.02 -0.50 5.09 -19.87 -0.10 -0.60 16 10 C 0.08 2.29 4.72 85.56 0.40 2.69 16 11 N -0.52 -18.75 5.15 -890.06 -4.59 -23.34 16 12 C 0.05 2.08 5.60 86.77 0.49 2.56 16 13 C -0.13 -5.86 5.67 31.98 0.18 -5.68 16 14 C 0.22 10.81 0.85 -10.35 -0.01 10.80 16 15 O -0.60 -30.76 13.09 -148.98 -1.95 -32.71 16 16 C -0.56 -29.62 8.22 25.60 0.21 -29.41 16 17 H 0.06 3.04 7.53 -2.91 -0.02 3.02 16 18 C 0.03 1.45 5.28 84.65 0.45 1.89 16 19 N -0.92 -48.84 10.69 21.45 0.23 -48.61 16 20 Si 0.96 41.98 29.54 68.60 2.03 44.00 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 C 0.07 2.72 6.21 86.65 0.54 3.26 16 25 C -0.14 -3.49 8.93 22.27 0.20 -3.29 16 26 C -0.03 -0.57 9.52 22.27 0.21 -0.36 16 27 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.07 0.52 8.09 -2.39 -0.02 0.50 16 30 H 0.43 2.84 8.96 -96.74 -0.87 1.97 16 31 H 0.16 2.44 7.61 -2.91 -0.02 2.42 16 32 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.10 2.50 7.97 -2.39 -0.02 2.48 16 34 H 0.04 1.31 7.79 -2.39 -0.02 1.29 16 35 H 0.04 1.56 6.99 -2.39 -0.02 1.54 16 36 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 37 H 0.05 2.38 8.04 -2.39 -0.02 2.36 16 38 H 0.05 2.66 7.76 -2.39 -0.02 2.65 16 39 H 0.38 20.16 6.98 -74.06 -0.52 19.65 16 40 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 41 H 0.08 3.32 7.63 -2.38 -0.02 3.30 16 42 H 0.05 2.07 7.48 -2.39 -0.02 2.06 16 43 H 0.13 3.11 7.48 -2.92 -0.02 3.08 16 44 H 0.15 2.80 7.62 -2.91 -0.02 2.78 16 Total: -1.00 -67.77 371.16 -6.07 -73.84 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -0.35 Total: 34.51 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 4.55 Total: -32.97 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -5.64 Total: -85.15 kcal Atomic # 8 Polarization: -79.66 SS G_CDS: -6.34 Total: -86.00 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 52.10 SS G_CDS: -0.32 Total: 51.77 kcal Total: -67.77 -6.07 -73.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595559892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.547 kcal (2) G-P(sol) polarization free energy of solvation -67.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds