Wall clock time and date at job start Sat Apr 11 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65598 * 119.99517 * 2 1 4 4 O 1.42098 * 106.40369 * 311.45498 * 3 2 1 5 5 O 1.42104 * 106.39768 * 178.53540 * 3 2 1 6 6 C 1.76198 * 107.22327 * 64.99889 * 3 2 1 7 7 C 1.38238 * 119.99991 * 89.99381 * 6 3 2 8 8 C 1.38232 * 119.99643 * 179.97438 * 7 6 3 9 9 C 1.38230 * 120.00706 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00662 * 180.02562 * 9 8 7 11 11 N 1.46904 * 109.47037 * 89.99651 * 10 9 8 12 12 C 1.47439 * 111.00045 * 290.12992 * 11 10 9 13 13 C 1.54322 * 107.36952 * 236.65966 * 12 11 10 14 14 C 1.55398 * 102.90031 * 337.89642 * 13 12 11 15 15 O 1.42894 * 110.90261 * 277.37719 * 14 13 12 16 16 C 1.50696 * 111.02695 * 153.63025 * 14 13 12 17 17 H 1.07991 * 120.00591 * 247.60311 * 16 14 13 18 18 C 1.37885 * 119.99573 * 67.60648 * 16 14 13 19 19 N 1.31515 * 119.99698 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99798 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47012 * 60.00381 * 20 18 16 22 22 H 1.48504 * 109.46873 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47355 * 300.00111 * 20 18 16 24 24 C 1.47843 * 110.99640 * 169.28284 * 11 10 9 25 25 C 1.38238 * 119.99695 * 0.27471 * 9 8 7 26 26 C 1.38232 * 120.00066 * 269.97805 * 6 3 2 27 27 H 1.09005 * 109.46888 * 60.00404 * 1 2 3 28 28 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47491 * 300.00464 * 1 2 3 30 30 H 0.96998 * 119.99984 * 179.97438 * 2 1 3 31 31 H 1.07999 * 120.00040 * 359.97438 * 7 6 3 32 32 H 1.08004 * 119.99797 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.46848 * 330.00053 * 10 9 8 34 34 H 1.08996 * 109.46914 * 209.99969 * 10 9 8 35 35 H 1.09002 * 109.88998 * 356.14887 * 12 11 10 36 36 H 1.09003 * 109.88733 * 117.17548 * 12 11 10 37 37 H 1.09005 * 110.70342 * 96.18020 * 13 12 11 38 38 H 1.08997 * 110.70605 * 219.41644 * 13 12 11 39 39 H 0.96697 * 114.00262 * 292.32457 * 15 14 13 40 40 H 0.97001 * 119.99346 * 179.97438 * 19 18 16 41 41 H 1.08996 * 110.37823 * 265.19398 * 24 11 10 42 42 H 1.09002 * 110.37399 * 27.53914 * 24 11 10 43 43 H 1.07995 * 120.00520 * 179.73021 * 25 9 8 44 44 H 1.08000 * 119.99690 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6737 1.1003 0.0348 6 6 1.9377 2.2416 1.5253 7 6 2.7380 2.0158 2.6296 8 6 2.4595 2.6497 3.8261 9 6 1.3813 3.5098 3.9182 10 6 1.0781 4.2013 5.2224 11 7 1.7920 5.4842 5.2739 12 6 3.2451 5.2752 5.4100 13 6 3.7015 6.0247 6.6794 14 6 2.5810 7.0827 6.8793 15 8 2.8089 8.2284 6.0562 16 6 2.4627 7.4777 8.3287 17 1 1.5804 7.2103 8.8911 18 6 3.4810 8.1808 8.9370 19 7 4.5557 8.5062 8.2522 20 14 3.3341 8.6711 10.7335 21 1 3.1910 7.4520 11.5692 22 1 4.5530 9.4127 11.1454 23 1 2.1419 9.5379 10.9142 24 6 1.3257 6.3046 6.4120 25 6 0.5780 3.7316 2.8153 26 6 0.8590 3.1011 1.6175 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9500 -0.8400 0.0004 31 1 3.5807 1.3442 2.5576 32 1 3.0850 2.4737 4.6888 33 1 1.4020 3.5718 6.0512 34 1 0.0055 4.3790 5.2986 35 1 3.4589 4.2111 5.5105 36 1 3.7607 5.6760 4.5372 37 1 3.7472 5.3467 7.5317 38 1 4.6655 6.5066 6.5168 39 1 3.5843 8.7473 6.3103 40 1 5.2718 9.0011 8.6800 41 1 0.5489 6.9970 6.0876 42 1 0.9550 5.6657 7.2136 43 1 -0.2670 4.4001 2.8883 44 1 0.2342 3.2780 0.7545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595559893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:41 Heat of formation + Delta-G solvation = -87.721983 kcal Electronic energy + Delta-G solvation = -27413.312065 eV Core-core repulsion = 23457.632578 eV Total energy + Delta-G solvation = -3955.679487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.71187 -38.14475 -37.44558 -36.05687 -35.34786 -34.96314 -32.29711 -32.06137 -31.18252 -29.35431 -28.13671 -26.37576 -25.91242 -24.17959 -22.98835 -21.92267 -20.00450 -19.82716 -19.57669 -18.25313 -17.74223 -17.15113 -16.58743 -15.83765 -15.58781 -15.20142 -14.96575 -14.89133 -14.56947 -14.50969 -14.11486 -13.94639 -13.63773 -13.21868 -13.13055 -12.91691 -12.64905 -12.44952 -12.29394 -12.21974 -11.97429 -11.94596 -11.57147 -11.44193 -11.28222 -11.17085 -11.13099 -10.85937 -10.68867 -10.51041 -10.32827 -9.98873 -9.93392 -9.39350 -9.19503 -9.11363 -8.63328 -8.10873 -7.73768 -6.26951 -4.35440 0.16193 0.70250 1.22774 2.75713 3.19371 3.25121 3.27165 3.33737 3.59344 4.13684 4.24216 4.58363 4.62414 4.64777 4.76948 4.82024 5.01550 5.04031 5.15932 5.22675 5.32920 5.37102 5.47648 5.49781 5.66173 5.75500 5.85026 5.90640 5.93274 6.02652 6.07903 6.09639 6.39285 6.46757 6.53580 6.59444 6.74720 6.79732 6.99002 7.36029 7.40746 7.51390 7.62413 7.77556 8.07635 8.66221 9.33871 9.57299 10.80171 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.002241 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.709070 B =12490.960812 C =12694.961151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.123 6.123 3 S 2.699 3.301 4 O -0.958 6.958 5 O -0.961 6.961 6 C -0.685 4.685 7 C -0.019 4.019 8 C -0.135 4.135 9 C -0.004 4.004 10 C 0.075 3.925 11 N -0.520 5.520 12 C 0.042 3.958 13 C -0.148 4.148 14 C 0.254 3.746 15 O -0.581 6.581 16 C -0.538 4.538 17 H 0.061 0.939 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.058 3.942 25 C -0.121 4.121 26 C -0.024 4.024 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.418 0.582 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.382 0.618 40 H 0.269 0.731 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.134 0.866 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.702 -18.072 -12.329 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.882 5.882 3 S 2.788 3.212 4 O -0.948 6.948 5 O -0.951 6.951 6 C -0.773 4.773 7 C -0.039 4.039 8 C -0.154 4.154 9 C -0.005 4.005 10 C -0.053 4.053 11 N -0.244 5.244 12 C -0.085 4.085 13 C -0.187 4.187 14 C 0.213 3.787 15 O -0.390 6.390 16 C -0.577 4.577 17 H 0.079 0.921 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.069 4.069 25 C -0.141 4.141 26 C -0.043 4.043 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.252 0.748 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.234 0.766 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.152 0.848 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.771 -17.465 -13.746 23.545 hybrid contribution 0.628 -0.242 2.862 2.940 sum -7.142 -17.707 -10.885 21.978 Atomic orbital electron populations 1.21499 0.78456 1.04194 1.02182 1.55349 1.16211 1.24441 1.92190 1.01722 0.72802 0.72625 0.74010 1.93583 1.78722 1.68309 1.54166 1.93594 1.30784 1.83417 1.87296 1.30663 1.08174 1.17172 1.21271 1.20824 0.95932 0.95912 0.91209 1.21274 0.97770 0.98086 0.98283 1.20281 0.92626 0.91787 0.95765 1.21362 0.99983 0.91544 0.92415 1.63674 1.04211 1.12226 1.44265 1.22904 0.88009 0.97903 0.99702 1.23342 1.02151 0.98939 0.94276 1.19529 0.87785 0.83044 0.88314 1.86101 1.52978 1.41288 1.58646 1.21527 1.04033 1.36576 0.95528 0.92087 1.25013 0.94660 0.94793 0.98655 1.69576 1.07464 1.39439 1.37118 0.86502 0.77650 0.78730 0.84207 1.20200 1.21083 1.20000 1.23044 0.99329 0.94837 0.89664 1.21181 1.00823 0.99853 0.92194 1.20885 0.93537 0.91935 0.97980 0.91277 0.89964 0.92023 0.74830 0.84504 0.85126 0.93596 0.89887 0.94346 0.91620 0.92629 0.90699 0.76614 0.92091 0.90824 0.93431 0.84823 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 11.14 59.85 0.67 1.07 16 2 N -1.12 -7.28 6.19 -16.63 -0.10 -7.38 16 3 S 2.70 28.11 5.74 -107.50 -0.62 27.49 16 4 O -0.96 -12.55 17.01 -57.17 -0.97 -13.53 16 5 O -0.96 -12.60 17.28 -57.17 -0.99 -13.59 16 6 C -0.68 -7.70 5.95 -39.58 -0.24 -7.94 16 7 C -0.02 -0.23 9.52 -39.58 -0.38 -0.60 16 8 C -0.13 -1.69 8.74 -39.59 -0.35 -2.04 16 9 C 0.00 -0.05 5.11 -104.62 -0.53 -0.58 16 10 C 0.07 1.09 4.75 -4.97 -0.02 1.07 16 11 N -0.52 -9.70 5.15 -232.68 -1.20 -10.89 16 12 C 0.04 0.81 6.25 -2.84 -0.02 0.80 16 13 C -0.15 -3.34 5.65 -24.77 -0.14 -3.48 16 14 C 0.25 6.21 0.89 -89.49 -0.08 6.13 16 15 O -0.58 -15.31 13.18 -35.23 -0.46 -15.78 16 16 C -0.54 -14.11 8.25 -34.44 -0.28 -14.39 16 17 H 0.06 1.57 7.77 -52.49 -0.41 1.16 16 18 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 19 N -0.90 -23.70 10.78 55.43 0.60 -23.10 16 20 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.06 1.22 5.86 -2.29 -0.01 1.20 16 25 C -0.12 -1.47 9.70 -39.58 -0.38 -1.86 16 26 C -0.02 -0.27 9.52 -39.58 -0.38 -0.65 16 27 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.42 1.85 8.96 -34.47 -0.31 1.54 16 31 H 0.14 1.35 7.62 -52.49 -0.40 0.95 16 32 H 0.13 1.51 6.91 -52.48 -0.36 1.15 16 33 H 0.05 0.65 7.90 -51.93 -0.41 0.24 16 34 H 0.08 1.09 8.01 -51.93 -0.42 0.67 16 35 H 0.04 0.64 5.50 -51.93 -0.29 0.36 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.05 1.26 8.04 -51.93 -0.42 0.84 16 38 H 0.07 1.81 7.84 -51.93 -0.41 1.41 16 39 H 0.38 10.28 6.93 45.56 0.32 10.60 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 42 H 0.05 0.94 7.68 -51.93 -0.40 0.54 16 43 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.14 1.27 7.62 -52.49 -0.40 0.87 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -32.53 370.63 -10.99 -43.52 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.57 Total: 11.92 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -2.24 Total: -19.52 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.70 Total: -41.38 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -2.42 Total: -42.90 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 28.11 SS G_CDS: -0.62 Total: 27.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.53 -10.99 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595559893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.207 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds