Wall clock time and date at job start Sat Apr 11 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65598 * 119.99517 * 2 1 4 4 O 1.42098 * 106.40369 * 311.45498 * 3 2 1 5 5 O 1.42104 * 106.39768 * 178.53540 * 3 2 1 6 6 C 1.76198 * 107.22327 * 64.99889 * 3 2 1 7 7 C 1.38238 * 119.99991 * 89.99381 * 6 3 2 8 8 C 1.38232 * 119.99643 * 179.97438 * 7 6 3 9 9 C 1.38230 * 120.00706 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00662 * 180.02562 * 9 8 7 11 11 N 1.46904 * 109.47037 * 89.99651 * 10 9 8 12 12 C 1.47439 * 111.00045 * 290.12992 * 11 10 9 13 13 C 1.54322 * 107.36952 * 236.65966 * 12 11 10 14 14 C 1.55398 * 102.90031 * 337.89642 * 13 12 11 15 15 O 1.42894 * 110.90261 * 277.37719 * 14 13 12 16 16 C 1.50696 * 111.02695 * 153.63025 * 14 13 12 17 17 H 1.07991 * 120.00591 * 247.60311 * 16 14 13 18 18 C 1.37885 * 119.99573 * 67.60648 * 16 14 13 19 19 N 1.31515 * 119.99698 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99798 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47012 * 60.00381 * 20 18 16 22 22 H 1.48504 * 109.46873 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47355 * 300.00111 * 20 18 16 24 24 C 1.47843 * 110.99640 * 169.28284 * 11 10 9 25 25 C 1.38238 * 119.99695 * 0.27471 * 9 8 7 26 26 C 1.38232 * 120.00066 * 269.97805 * 6 3 2 27 27 H 1.09005 * 109.46888 * 60.00404 * 1 2 3 28 28 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47491 * 300.00464 * 1 2 3 30 30 H 0.96998 * 119.99984 * 179.97438 * 2 1 3 31 31 H 1.07999 * 120.00040 * 359.97438 * 7 6 3 32 32 H 1.08004 * 119.99797 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.46848 * 330.00053 * 10 9 8 34 34 H 1.08996 * 109.46914 * 209.99969 * 10 9 8 35 35 H 1.09002 * 109.88998 * 356.14887 * 12 11 10 36 36 H 1.09003 * 109.88733 * 117.17548 * 12 11 10 37 37 H 1.09005 * 110.70342 * 96.18020 * 13 12 11 38 38 H 1.08997 * 110.70605 * 219.41644 * 13 12 11 39 39 H 0.96697 * 114.00262 * 292.32457 * 15 14 13 40 40 H 0.97001 * 119.99346 * 179.97438 * 19 18 16 41 41 H 1.08996 * 110.37823 * 265.19398 * 24 11 10 42 42 H 1.09002 * 110.37399 * 27.53914 * 24 11 10 43 43 H 1.07995 * 120.00520 * 179.73021 * 25 9 8 44 44 H 1.08000 * 119.99690 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6737 1.1003 0.0348 6 6 1.9377 2.2416 1.5253 7 6 2.7380 2.0158 2.6296 8 6 2.4595 2.6497 3.8261 9 6 1.3813 3.5098 3.9182 10 6 1.0781 4.2013 5.2224 11 7 1.7920 5.4842 5.2739 12 6 3.2451 5.2752 5.4100 13 6 3.7015 6.0247 6.6794 14 6 2.5810 7.0827 6.8793 15 8 2.8089 8.2284 6.0562 16 6 2.4627 7.4777 8.3287 17 1 1.5804 7.2103 8.8911 18 6 3.4810 8.1808 8.9370 19 7 4.5557 8.5062 8.2522 20 14 3.3341 8.6711 10.7335 21 1 3.1910 7.4520 11.5692 22 1 4.5530 9.4127 11.1454 23 1 2.1419 9.5379 10.9142 24 6 1.3257 6.3046 6.4120 25 6 0.5780 3.7316 2.8153 26 6 0.8590 3.1011 1.6175 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9500 -0.8400 0.0004 31 1 3.5807 1.3442 2.5576 32 1 3.0850 2.4737 4.6888 33 1 1.4020 3.5718 6.0512 34 1 0.0055 4.3790 5.2986 35 1 3.4589 4.2111 5.5105 36 1 3.7607 5.6760 4.5372 37 1 3.7472 5.3467 7.5317 38 1 4.6655 6.5066 6.5168 39 1 3.5843 8.7473 6.3103 40 1 5.2718 9.0011 8.6800 41 1 0.5489 6.9970 6.0876 42 1 0.9550 5.6657 7.2136 43 1 -0.2670 4.4001 2.8883 44 1 0.2342 3.2780 0.7545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595559893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:40 Heat of formation + Delta-G solvation = -114.201747 kcal Electronic energy + Delta-G solvation = -27414.460314 eV Core-core repulsion = 23457.632578 eV Total energy + Delta-G solvation = -3956.827736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81855 -39.62350 -38.37116 -36.99266 -36.66980 -35.86990 -34.12184 -33.51591 -32.08325 -30.83985 -29.87957 -27.37762 -26.81600 -25.82849 -23.91517 -23.03824 -21.47159 -21.42064 -20.58617 -19.11054 -19.04356 -18.54681 -17.38239 -17.01338 -16.93818 -16.78735 -16.34850 -16.13932 -15.77047 -15.58432 -15.38628 -14.68927 -14.61006 -14.47527 -14.30961 -14.05211 -13.82220 -13.73003 -13.64069 -13.26065 -13.19901 -13.16987 -13.04295 -12.81536 -12.68619 -12.52842 -12.48610 -12.35624 -12.26872 -12.13043 -11.75395 -11.65107 -11.16046 -10.62208 -10.53400 -10.26364 -10.06496 -10.00193 -9.21202 -8.23886 -6.39816 -0.65057 -0.22668 0.32403 1.40793 1.42368 1.49829 2.01910 2.36076 2.43559 2.75720 3.00630 3.25469 3.30302 3.66983 3.75931 3.92681 4.00355 4.04970 4.15208 4.26255 4.31238 4.34465 4.42275 4.56001 4.59230 4.69529 4.73208 4.76117 4.87779 4.91540 4.97683 5.02548 5.03492 5.08031 5.13744 5.23852 5.44996 5.50466 5.52123 5.77653 5.83948 5.91666 6.11748 6.15917 6.21961 6.66214 7.32398 7.49738 8.81537 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.002241 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.709070 B =12490.960812 C =12694.961151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.109 6.109 3 S 2.719 3.281 4 O -0.986 6.986 5 O -0.990 6.990 6 C -0.685 4.685 7 C -0.027 4.027 8 C -0.143 4.143 9 C -0.020 4.020 10 C 0.076 3.924 11 N -0.527 5.527 12 C 0.054 3.946 13 C -0.141 4.141 14 C 0.233 3.767 15 O -0.592 6.592 16 C -0.560 4.560 17 H 0.059 0.941 18 C 0.028 3.972 19 N -0.915 5.915 20 Si 0.962 3.038 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.067 3.933 25 C -0.127 4.127 26 C -0.027 4.027 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.429 0.571 31 H 0.152 0.848 32 H 0.138 0.862 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.375 0.625 40 H 0.270 0.730 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.146 0.854 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 -19.857 -12.414 25.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.872 5.872 3 S 2.808 3.192 4 O -0.976 6.976 5 O -0.980 6.980 6 C -0.772 4.772 7 C -0.046 4.046 8 C -0.162 4.162 9 C -0.021 4.021 10 C -0.051 4.051 11 N -0.251 5.251 12 C -0.074 4.074 13 C -0.180 4.180 14 C 0.193 3.807 15 O -0.401 6.401 16 C -0.599 4.599 17 H 0.078 0.922 18 C -0.173 4.173 19 N -0.555 5.555 20 Si 0.787 3.213 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.060 4.060 25 C -0.146 4.146 26 C -0.046 4.046 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.086 0.914 30 H 0.266 0.734 31 H 0.169 0.831 32 H 0.156 0.844 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.225 0.775 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.163 0.837 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.952 -19.273 -13.836 25.358 hybrid contribution 0.948 0.249 2.824 2.989 sum -8.004 -19.024 -11.013 23.393 Atomic orbital electron populations 1.21784 0.77007 1.06197 1.02472 1.55000 1.17019 1.23484 1.91695 1.00949 0.72037 0.72875 0.73295 1.93548 1.79082 1.69728 1.55194 1.93550 1.32952 1.83953 1.87554 1.30828 1.07954 1.17069 1.21373 1.21046 0.96420 0.96096 0.91017 1.21415 0.97734 0.98144 0.98931 1.20228 0.93655 0.92701 0.95531 1.21422 1.00409 0.89687 0.93565 1.63565 1.03870 1.14618 1.43061 1.22746 0.88478 0.98906 0.97267 1.23157 1.00465 0.98585 0.95773 1.19858 0.90117 0.83012 0.87737 1.86093 1.52638 1.42154 1.59232 1.21833 1.04162 1.37188 0.96679 0.92239 1.25737 0.94376 0.94771 1.02378 1.69674 1.07837 1.39617 1.38392 0.85554 0.77503 0.78453 0.79759 1.19534 1.20813 1.19870 1.22869 0.97509 0.94911 0.90693 1.21381 1.01079 0.99986 0.92164 1.21140 0.93702 0.91461 0.98332 0.91432 0.87166 0.91413 0.73391 0.83081 0.84445 0.92820 0.88302 0.91611 0.92844 0.93098 0.93178 0.77464 0.92076 0.91492 0.92346 0.83669 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.14 127.77 1.42 1.93 16 2 N -1.11 -11.94 6.19 -206.53 -1.28 -13.22 16 3 S 2.72 52.84 5.74 -56.49 -0.32 52.51 16 4 O -0.99 -24.70 17.01 -128.00 -2.18 -26.88 16 5 O -0.99 -24.97 17.28 -128.00 -2.21 -27.18 16 6 C -0.68 -14.24 5.95 22.27 0.13 -14.11 16 7 C -0.03 -0.57 9.52 22.27 0.21 -0.36 16 8 C -0.14 -3.34 8.74 22.27 0.19 -3.14 16 9 C -0.02 -0.51 5.11 -19.87 -0.10 -0.61 16 10 C 0.08 2.08 4.75 85.56 0.41 2.49 16 11 N -0.53 -19.10 5.15 -890.07 -4.58 -23.68 16 12 C 0.05 2.03 6.25 86.65 0.54 2.58 16 13 C -0.14 -6.42 5.65 31.87 0.18 -6.24 16 14 C 0.23 11.50 0.89 -10.06 -0.01 11.49 16 15 O -0.59 -31.95 13.18 -148.98 -1.96 -33.92 16 16 C -0.56 -29.55 8.25 25.60 0.21 -29.34 16 17 H 0.06 3.07 7.77 -2.92 -0.02 3.04 16 18 C 0.03 1.44 5.29 84.66 0.45 1.89 16 19 N -0.92 -49.11 10.78 21.45 0.23 -48.88 16 20 Si 0.96 41.53 29.54 68.60 2.03 43.56 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 C 0.07 2.79 5.86 86.78 0.51 3.29 16 25 C -0.13 -2.84 9.70 22.27 0.22 -2.63 16 26 C -0.03 -0.56 9.52 22.27 0.21 -0.35 16 27 H 0.07 0.53 8.10 -2.38 -0.02 0.51 16 28 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.43 2.80 8.96 -96.75 -0.87 1.93 16 31 H 0.15 2.73 7.62 -2.91 -0.02 2.71 16 32 H 0.14 2.92 6.91 -2.91 -0.02 2.90 16 33 H 0.05 1.39 7.90 -2.39 -0.02 1.37 16 34 H 0.10 2.36 8.01 -2.39 -0.02 2.34 16 35 H 0.07 2.11 5.50 -2.39 -0.01 2.10 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 2.31 8.04 -2.38 -0.02 2.29 16 38 H 0.05 2.49 7.84 -2.39 -0.02 2.47 16 39 H 0.38 20.86 6.93 -74.06 -0.51 20.35 16 40 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 41 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.06 2.25 7.68 -2.39 -0.02 2.23 16 43 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 44 H 0.16 2.55 7.62 -2.91 -0.02 2.53 16 Total: -1.00 -69.47 370.63 -6.05 -75.51 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -0.35 Total: 35.28 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 4.58 Total: -33.10 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -5.63 Total: -85.78 kcal Atomic # 8 Polarization: -81.62 SS G_CDS: -6.35 Total: -87.98 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 52.84 SS G_CDS: -0.32 Total: 52.51 kcal Total: -69.47 -6.05 -75.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595559893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.689 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds