Wall clock time and date at job start Sat Apr 11 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00426 * 2 1 4 4 C 1.50697 * 109.47621 * 180.02562 * 3 2 1 5 5 C 1.33379 * 122.53794 * 89.97537 * 4 3 2 6 6 S 1.75885 * 109.59480 * 180.02562 * 5 4 3 7 7 C 1.75890 * 90.96928 * 359.97438 * 6 5 4 8 8 C 1.50699 * 125.20662 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47384 * 270.02803 * 8 7 6 10 10 C 1.34772 * 119.99903 * 179.97438 * 9 8 7 11 11 O 1.21589 * 120.00544 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99852 * 179.97438 * 10 9 8 13 13 C 1.47430 * 125.64743 * 359.69645 * 12 10 9 14 14 C 1.55129 * 104.72136 * 155.81807 * 13 12 10 15 15 C 1.55163 * 101.48700 * 37.29319 * 14 13 12 16 16 O 1.42897 * 110.71526 * 82.69540 * 15 14 13 17 17 C 1.50699 * 110.87048 * 205.89816 * 15 14 13 18 18 H 1.07996 * 119.99603 * 118.67530 * 17 15 14 19 19 C 1.37874 * 119.99981 * 298.67115 * 17 15 14 20 20 N 1.31517 * 119.99873 * 183.38874 * 19 17 15 21 21 Si 1.86801 * 120.00391 * 3.39269 * 19 17 15 22 22 H 1.48496 * 109.47022 * 84.83200 * 21 19 17 23 23 H 1.48494 * 109.47479 * 204.83450 * 21 19 17 24 24 H 1.48498 * 109.46901 * 324.83432 * 21 19 17 25 25 C 1.47021 * 125.64902 * 180.02562 * 12 10 9 26 26 C 1.33391 * 109.59004 * 0.23087 * 7 6 5 27 27 H 1.09003 * 109.46769 * 59.99568 * 1 2 3 28 28 H 1.08995 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46908 * 299.99937 * 1 2 3 30 30 H 1.09003 * 109.46833 * 60.00051 * 3 2 1 31 31 H 1.09002 * 109.46908 * 300.00501 * 3 2 1 32 32 H 1.08004 * 125.20934 * 0.02562 * 5 4 3 33 33 H 1.08995 * 109.47331 * 150.02501 * 8 7 6 34 34 H 1.09010 * 109.46789 * 30.02563 * 8 7 6 35 35 H 0.97003 * 119.99699 * 0.02562 * 9 8 7 36 36 H 1.09000 * 110.36738 * 274.74530 * 13 12 10 37 37 H 1.08997 * 110.36363 * 37.06654 * 13 12 10 38 38 H 1.09002 * 111.19025 * 279.19078 * 14 13 12 39 39 H 1.08996 * 110.90442 * 155.27599 * 14 13 12 40 40 H 0.96703 * 113.99761 * 185.01926 * 16 15 14 41 41 H 0.97003 * 120.00284 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.88301 * 300.44471 * 25 12 10 43 43 H 1.08999 * 109.87883 * 61.45370 * 25 12 10 44 44 H 1.08005 * 122.53285 * 179.74976 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2272 1.1295 -1.1254 6 16 5.9362 0.9935 -0.7321 7 6 5.5732 1.0233 0.9886 8 6 6.5947 0.9419 2.0936 9 7 6.8160 -0.4613 2.4518 10 6 7.6950 -0.7783 3.4229 11 8 8.3040 0.1002 4.0022 12 7 7.8981 -2.0693 3.7528 13 6 7.2250 -3.2289 3.1398 14 6 8.1939 -4.4172 3.3759 15 6 8.7390 -4.0948 4.7924 16 8 7.8316 -4.5487 5.7986 17 6 10.1032 -4.7026 4.9938 18 1 10.9535 -4.0670 5.1920 19 6 10.2656 -6.0700 4.9253 20 7 11.4423 -6.6053 5.1668 21 14 8.8144 -7.1623 4.4892 22 1 8.6821 -7.2434 3.0123 23 1 9.0351 -8.5228 5.0418 24 1 7.5722 -6.5890 5.0666 25 6 8.8226 -2.5538 4.7882 26 6 4.2549 1.1233 1.1660 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8191 1.1620 -2.1248 33 1 6.2314 1.4864 2.9651 34 1 7.5324 1.3826 1.7547 35 1 6.3303 -1.1623 1.9893 36 1 6.2682 -3.4139 3.6280 37 1 7.0814 -3.0633 2.0721 38 1 8.9978 -4.4224 2.6397 39 1 7.6555 -5.3649 3.3708 40 1 8.0877 -4.3041 6.6984 41 1 11.5568 -7.5674 5.1182 42 1 9.8395 -2.2385 4.5542 43 1 8.5277 -2.1615 5.7614 44 1 3.8014 1.1550 2.1457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596820340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:53 Heat of formation + Delta-G solvation = -69.065742 kcal Electronic energy + Delta-G solvation = -26874.512606 eV Core-core repulsion = 22919.642114 eV Total energy + Delta-G solvation = -3954.870492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.97089 -39.20525 -37.88191 -37.33771 -34.77235 -34.51970 -32.42030 -31.30603 -30.04674 -28.43992 -28.09362 -26.52417 -26.05010 -24.76759 -22.61158 -21.89213 -20.05430 -19.59439 -19.38356 -18.28399 -17.49640 -17.23436 -16.82432 -16.24142 -15.86203 -15.71578 -15.53026 -14.91512 -14.79602 -14.54447 -14.19110 -13.86268 -13.38295 -13.30306 -13.13347 -12.97747 -12.95490 -12.80162 -12.46587 -12.20939 -12.15739 -11.99064 -11.72338 -11.60234 -11.33408 -11.12091 -11.02115 -10.57672 -10.29389 -10.12852 -10.12100 -9.81808 -9.08319 -9.05561 -9.02233 -8.76263 -8.73852 -8.50054 -8.04598 -6.21155 -4.33077 0.54244 1.26491 1.63141 2.11812 3.02466 3.28949 3.41410 3.50353 3.59786 3.63811 4.26639 4.30778 4.41624 4.57257 4.71458 4.83295 4.92951 4.95211 4.99275 5.08041 5.15554 5.22242 5.25897 5.27978 5.31715 5.52981 5.60913 5.74658 5.79737 5.86248 5.96311 6.09410 6.10899 6.47792 6.50615 6.56175 6.62941 6.68086 6.70218 7.11705 7.31645 7.50655 8.19261 8.27506 8.74338 8.87077 8.90125 9.41725 10.89233 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002498 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.269041 B =11208.108888 C =12056.388136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.122 3.878 4 C -0.111 4.111 5 C -0.189 4.189 6 S 0.131 5.869 7 C -0.201 4.201 8 C 0.215 3.785 9 N -0.747 5.747 10 C 0.721 3.279 11 O -0.597 6.597 12 N -0.627 5.627 13 C 0.102 3.898 14 C -0.124 4.124 15 C 0.216 3.784 16 O -0.573 6.573 17 C -0.550 4.550 18 H 0.079 0.921 19 C 0.088 3.912 20 N -0.887 5.887 21 Si 0.876 3.124 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.228 1.228 25 C 0.115 3.885 26 C -0.099 4.099 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.166 0.834 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.397 0.603 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.366 0.634 41 H 0.267 0.733 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.350 15.538 -13.254 28.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.043 3.957 4 C -0.124 4.124 5 C -0.326 4.326 6 S 0.397 5.603 7 C -0.319 4.319 8 C 0.089 3.911 9 N -0.405 5.405 10 C 0.422 3.578 11 O -0.476 6.476 12 N -0.363 5.363 13 C -0.021 4.021 14 C -0.162 4.162 15 C 0.176 3.824 16 O -0.380 6.380 17 C -0.587 4.587 18 H 0.097 0.903 19 C -0.117 4.117 20 N -0.523 5.523 21 Si 0.704 3.296 22 H -0.210 1.210 23 H -0.228 1.228 24 H -0.151 1.151 25 C -0.008 4.008 26 C -0.130 4.130 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.183 0.817 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.232 0.768 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.213 0.787 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.621 15.618 -14.204 28.149 hybrid contribution -2.063 -0.503 0.639 2.218 sum -20.683 15.114 -13.564 28.987 Atomic orbital electron populations 1.22770 0.80831 1.03042 0.99976 1.87995 1.19668 1.27310 1.95391 1.21014 0.88551 0.85170 1.00935 1.18559 0.95460 1.06002 0.92343 1.25632 0.96618 1.07864 1.02448 1.84488 1.05275 1.70982 0.99561 1.24484 0.97906 1.11879 0.97602 1.19388 0.95538 0.82805 0.93391 1.45175 1.46587 1.07899 1.40846 1.15392 0.80180 0.82014 0.80171 1.90896 1.53075 1.46784 1.56811 1.47678 1.44920 1.03255 1.40489 1.22357 0.96684 0.86489 0.96571 1.23108 0.98219 0.96330 0.98580 1.19991 0.89340 0.87475 0.85631 1.86494 1.52961 1.80456 1.18073 1.21185 0.92341 0.92931 1.52288 0.90283 1.24953 0.95784 0.98078 0.92866 1.69930 1.23300 1.12118 1.46935 0.87067 0.85560 0.78663 0.78340 1.20983 1.22783 1.15087 1.22676 0.92490 0.96361 0.89252 1.20023 0.92119 1.01338 0.99548 0.94057 0.89413 0.93926 0.92156 0.92404 0.81650 0.89760 0.90563 0.76834 0.91631 0.92114 0.89301 0.90699 0.78722 0.92341 0.90920 0.92514 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.56 10.69 -35.23 -0.38 -3.93 16 3 C 0.12 0.90 6.19 36.00 0.22 1.12 16 4 C -0.11 -0.97 5.43 -106.25 -0.58 -1.55 16 5 C -0.19 -1.55 10.98 29.03 0.32 -1.23 16 6 S 0.13 1.18 23.33 -107.50 -2.51 -1.33 16 7 C -0.20 -2.01 5.88 -36.00 -0.21 -2.22 16 8 C 0.21 2.54 6.16 -5.19 -0.03 2.51 16 9 N -0.75 -10.45 5.51 -66.41 -0.37 -10.82 16 10 C 0.72 13.22 8.49 -86.92 -0.74 12.48 16 11 O -0.60 -12.93 16.67 5.29 0.09 -12.84 16 12 N -0.63 -11.74 3.32 -176.10 -0.59 -12.33 16 13 C 0.10 1.71 6.58 -2.41 -0.02 1.70 16 14 C -0.12 -2.51 4.83 -24.46 -0.12 -2.63 16 15 C 0.22 4.80 0.67 -89.93 -0.06 4.74 16 16 O -0.57 -12.35 10.44 -35.23 -0.37 -12.72 16 17 C -0.55 -14.62 8.82 -34.44 -0.30 -14.93 16 18 H 0.08 2.30 7.82 -52.49 -0.41 1.89 16 19 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 20 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 21 Si 0.88 20.98 23.89 -169.99 -4.06 16.92 16 22 H -0.28 -6.57 7.08 56.52 0.40 -6.17 16 23 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.23 -5.31 5.50 56.52 0.31 -5.00 16 25 C 0.11 2.40 6.21 -3.06 -0.02 2.38 16 26 C -0.10 -0.93 9.85 -41.21 -0.41 -1.34 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.40 4.97 6.94 -40.82 -0.28 4.69 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.85 7.28 -51.93 -0.38 0.47 16 38 H 0.09 1.83 8.04 -51.93 -0.42 1.41 16 39 H 0.07 1.53 5.00 -51.93 -0.26 1.27 16 40 H 0.37 6.89 9.08 45.56 0.41 7.31 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.07 1.63 7.66 -51.93 -0.40 1.23 16 43 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 44 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -33.36 373.47 -8.30 -41.66 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.61 Total: 10.50 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.92 Total: 4.67 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.18 Total: -48.57 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.66 Total: -29.49 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.06 Total: 16.92 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.51 Total: -1.33 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.36 -8.30 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596820340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.402 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds