Wall clock time and date at job start Sat Apr 11 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00426 * 2 1 4 4 C 1.50697 * 109.47621 * 180.02562 * 3 2 1 5 5 C 1.33379 * 122.53794 * 89.97537 * 4 3 2 6 6 S 1.75885 * 109.59480 * 180.02562 * 5 4 3 7 7 C 1.75890 * 90.96928 * 359.97438 * 6 5 4 8 8 C 1.50699 * 125.20662 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47384 * 270.02803 * 8 7 6 10 10 C 1.34772 * 119.99903 * 179.97438 * 9 8 7 11 11 O 1.21589 * 120.00544 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99852 * 179.97438 * 10 9 8 13 13 C 1.47430 * 125.64743 * 359.69645 * 12 10 9 14 14 C 1.55129 * 104.72136 * 155.81807 * 13 12 10 15 15 C 1.55163 * 101.48700 * 37.29319 * 14 13 12 16 16 O 1.42897 * 110.71526 * 82.69540 * 15 14 13 17 17 C 1.50699 * 110.87048 * 205.89816 * 15 14 13 18 18 H 1.07996 * 119.99603 * 118.67530 * 17 15 14 19 19 C 1.37874 * 119.99981 * 298.67115 * 17 15 14 20 20 N 1.31517 * 119.99873 * 183.38874 * 19 17 15 21 21 Si 1.86801 * 120.00391 * 3.39269 * 19 17 15 22 22 H 1.48496 * 109.47022 * 84.83200 * 21 19 17 23 23 H 1.48494 * 109.47479 * 204.83450 * 21 19 17 24 24 H 1.48498 * 109.46901 * 324.83432 * 21 19 17 25 25 C 1.47021 * 125.64902 * 180.02562 * 12 10 9 26 26 C 1.33391 * 109.59004 * 0.23087 * 7 6 5 27 27 H 1.09003 * 109.46769 * 59.99568 * 1 2 3 28 28 H 1.08995 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46908 * 299.99937 * 1 2 3 30 30 H 1.09003 * 109.46833 * 60.00051 * 3 2 1 31 31 H 1.09002 * 109.46908 * 300.00501 * 3 2 1 32 32 H 1.08004 * 125.20934 * 0.02562 * 5 4 3 33 33 H 1.08995 * 109.47331 * 150.02501 * 8 7 6 34 34 H 1.09010 * 109.46789 * 30.02563 * 8 7 6 35 35 H 0.97003 * 119.99699 * 0.02562 * 9 8 7 36 36 H 1.09000 * 110.36738 * 274.74530 * 13 12 10 37 37 H 1.08997 * 110.36363 * 37.06654 * 13 12 10 38 38 H 1.09002 * 111.19025 * 279.19078 * 14 13 12 39 39 H 1.08996 * 110.90442 * 155.27599 * 14 13 12 40 40 H 0.96703 * 113.99761 * 185.01926 * 16 15 14 41 41 H 0.97003 * 120.00284 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.88301 * 300.44471 * 25 12 10 43 43 H 1.08999 * 109.87883 * 61.45370 * 25 12 10 44 44 H 1.08005 * 122.53285 * 179.74976 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2272 1.1295 -1.1254 6 16 5.9362 0.9935 -0.7321 7 6 5.5732 1.0233 0.9886 8 6 6.5947 0.9419 2.0936 9 7 6.8160 -0.4613 2.4518 10 6 7.6950 -0.7783 3.4229 11 8 8.3040 0.1002 4.0022 12 7 7.8981 -2.0693 3.7528 13 6 7.2250 -3.2289 3.1398 14 6 8.1939 -4.4172 3.3759 15 6 8.7390 -4.0948 4.7924 16 8 7.8316 -4.5487 5.7986 17 6 10.1032 -4.7026 4.9938 18 1 10.9535 -4.0670 5.1920 19 6 10.2656 -6.0700 4.9253 20 7 11.4423 -6.6053 5.1668 21 14 8.8144 -7.1623 4.4892 22 1 8.6821 -7.2434 3.0123 23 1 9.0351 -8.5228 5.0418 24 1 7.5722 -6.5890 5.0666 25 6 8.8226 -2.5538 4.7882 26 6 4.2549 1.1233 1.1660 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8191 1.1620 -2.1248 33 1 6.2314 1.4864 2.9651 34 1 7.5324 1.3826 1.7547 35 1 6.3303 -1.1623 1.9893 36 1 6.2682 -3.4139 3.6280 37 1 7.0814 -3.0633 2.0721 38 1 8.9978 -4.4224 2.6397 39 1 7.6555 -5.3649 3.3708 40 1 8.0877 -4.3041 6.6984 41 1 11.5568 -7.5674 5.1182 42 1 9.8395 -2.2385 4.5542 43 1 8.5277 -2.1615 5.7614 44 1 3.8014 1.1550 2.1457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596820340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:53 Heat of formation + Delta-G solvation = -95.140267 kcal Electronic energy + Delta-G solvation = -26875.643282 eV Core-core repulsion = 22919.642114 eV Total energy + Delta-G solvation = -3956.001168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40791 -39.90332 -39.34872 -38.05727 -36.16880 -35.92724 -34.50079 -32.42789 -31.42259 -29.98763 -28.76818 -27.69423 -26.59960 -26.30212 -24.13680 -22.67675 -21.66617 -21.12020 -20.06262 -19.71905 -19.10922 -18.18437 -17.46002 -17.30300 -16.97266 -16.82772 -16.66837 -16.49212 -16.22930 -15.57971 -15.49064 -15.00541 -14.90461 -14.76549 -14.28123 -14.11418 -14.02927 -13.82060 -13.67315 -13.48049 -13.20970 -13.13744 -12.85275 -12.80524 -12.65999 -12.38056 -12.23974 -12.15781 -11.84450 -11.68306 -11.37796 -10.95631 -10.79017 -10.62043 -10.37525 -10.31887 -9.78550 -9.51688 -9.43172 -8.35144 -6.51131 -0.15258 0.58242 0.96310 1.36321 1.39298 1.47993 1.69660 1.77179 2.06159 2.41082 3.00440 3.00820 3.13787 3.53097 3.55442 3.75946 4.01302 4.03129 4.13836 4.22602 4.25347 4.35684 4.42684 4.47751 4.52727 4.55086 4.59107 4.59431 4.68253 4.79804 4.90583 4.93429 5.05685 5.06250 5.08865 5.31490 5.33874 5.43117 5.44144 5.51803 6.01198 6.08063 6.23620 6.59870 6.91560 7.12843 7.30250 7.45877 8.79088 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002498 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.269041 B =11208.108888 C =12056.388136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.121 3.879 4 C -0.125 4.125 5 C -0.179 4.179 6 S 0.128 5.872 7 C -0.216 4.216 8 C 0.217 3.783 9 N -0.729 5.729 10 C 0.718 3.282 11 O -0.635 6.635 12 N -0.630 5.630 13 C 0.110 3.890 14 C -0.128 4.128 15 C 0.218 3.782 16 O -0.572 6.572 17 C -0.552 4.552 18 H 0.035 0.965 19 C 0.035 3.965 20 N -0.937 5.937 21 Si 0.940 3.060 22 H -0.266 1.266 23 H -0.309 1.309 24 H -0.212 1.212 25 C 0.123 3.877 26 C -0.094 4.094 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.188 0.812 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.408 0.592 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.377 0.623 41 H 0.268 0.732 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.964 15.860 -15.141 32.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.042 3.958 4 C -0.137 4.137 5 C -0.315 4.315 6 S 0.394 5.606 7 C -0.333 4.333 8 C 0.092 3.908 9 N -0.386 5.386 10 C 0.420 3.580 11 O -0.517 6.517 12 N -0.367 5.367 13 C -0.011 4.011 14 C -0.166 4.166 15 C 0.178 3.822 16 O -0.379 6.379 17 C -0.589 4.589 18 H 0.054 0.946 19 C -0.165 4.165 20 N -0.575 5.575 21 Si 0.765 3.235 22 H -0.192 1.192 23 H -0.237 1.237 24 H -0.134 1.134 25 C -0.001 4.001 26 C -0.126 4.126 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.205 0.795 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.244 0.756 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.225 0.775 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -22.281 15.961 -16.127 31.800 hybrid contribution -0.911 -0.499 1.235 1.614 sum -23.192 15.462 -14.892 31.602 Atomic orbital electron populations 1.22917 0.79405 1.03667 1.01073 1.87938 1.21356 1.28399 1.95636 1.21114 0.87511 0.84841 1.02309 1.18762 0.96463 1.06319 0.92154 1.25940 0.95856 1.06331 1.03423 1.84517 1.06228 1.71069 0.98812 1.24229 0.97645 1.13881 0.97558 1.19393 0.95923 0.81355 0.94163 1.45078 1.45053 1.09248 1.39212 1.15533 0.80482 0.81325 0.80637 1.90870 1.54691 1.47809 1.58354 1.47609 1.44756 1.04106 1.40208 1.22432 0.95885 0.83964 0.98870 1.23058 0.98866 0.98183 0.96471 1.19795 0.87397 0.87900 0.87155 1.86438 1.52174 1.80519 1.18788 1.21410 0.93528 0.92664 1.51331 0.94647 1.25803 0.98330 0.99585 0.92769 1.70070 1.25788 1.12501 1.49187 0.86079 0.82489 0.76002 0.78968 1.19199 1.23731 1.13433 1.22336 0.91858 0.95677 0.90209 1.20191 0.91935 1.00175 1.00253 0.92682 0.89119 0.93098 0.91228 0.90627 0.79500 0.89812 0.91247 0.75603 0.89938 0.88524 0.90142 0.90130 0.77462 0.92296 0.93624 0.92393 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.63 10.69 -148.98 -1.59 -8.22 16 3 C 0.12 1.44 6.19 71.24 0.44 1.88 16 4 C -0.12 -1.86 5.43 -20.92 -0.11 -1.98 16 5 C -0.18 -2.43 10.98 66.72 0.73 -1.69 16 6 S 0.13 2.04 23.33 -56.49 -1.32 0.72 16 7 C -0.22 -3.92 5.88 24.59 0.14 -3.78 16 8 C 0.22 4.87 6.16 85.63 0.53 5.40 16 9 N -0.73 -19.00 5.51 -482.29 -2.66 -21.66 16 10 C 0.72 25.56 8.49 179.06 1.52 27.08 16 11 O -0.64 -27.58 16.67 -4.00 -0.07 -27.64 16 12 N -0.63 -22.70 3.32 -829.31 -2.76 -25.46 16 13 C 0.11 3.34 6.58 86.93 0.57 3.92 16 14 C -0.13 -4.87 4.83 32.07 0.15 -4.71 16 15 C 0.22 9.56 0.67 -10.35 -0.01 9.55 16 16 O -0.57 -23.52 10.44 -148.98 -1.56 -25.08 16 17 C -0.55 -30.09 8.82 25.60 0.23 -29.87 16 18 H 0.04 2.18 7.82 -2.91 -0.02 2.16 16 19 C 0.04 1.98 5.47 84.65 0.46 2.44 16 20 N -0.94 -57.00 13.96 21.45 0.30 -56.70 16 21 Si 0.94 42.80 23.89 68.60 1.64 44.43 16 22 H -0.27 -11.35 7.08 99.48 0.70 -10.65 16 23 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.21 -9.06 5.50 99.48 0.55 -8.51 16 25 C 0.12 5.18 6.21 86.73 0.54 5.71 16 26 C -0.09 -1.56 9.85 21.22 0.21 -1.35 16 27 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 32 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.41 8.97 6.94 -92.71 -0.64 8.32 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.10 2.27 7.28 -2.39 -0.02 2.25 16 38 H 0.08 3.18 8.04 -2.39 -0.02 3.16 16 39 H 0.08 2.99 5.00 -2.39 -0.01 2.98 16 40 H 0.38 13.72 9.08 -74.06 -0.67 13.04 16 41 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.05 2.14 7.66 -2.39 -0.02 2.12 16 43 H 0.06 2.39 8.06 -2.39 -0.02 2.37 16 44 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -73.35 373.47 -1.79 -75.15 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: -0.44 Total: 30.36 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.66 Total: 14.10 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -5.11 Total: -103.82 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -3.21 Total: -60.94 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.64 Total: 44.43 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.32 Total: 0.72 kcal Total: -73.35 -1.79 -75.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596820340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.995 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds