Wall clock time and date at job start Sat Apr 11 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81396 * 109.47232 * 2 1 4 4 O 1.42107 * 110.54151 * 68.37461 * 3 2 1 5 5 O 1.42100 * 110.54278 * 291.62821 * 3 2 1 6 6 N 1.65598 * 104.45365 * 179.97438 * 3 2 1 7 7 C 1.46498 * 120.00296 * 270.00430 * 6 3 2 8 8 C 1.39901 * 119.99793 * 89.99632 * 6 3 2 9 9 C 1.38888 * 120.00299 * 155.00041 * 8 6 3 10 10 C 1.38062 * 119.99577 * 180.25661 * 9 8 6 11 11 C 1.38850 * 119.99889 * 359.47338 * 10 9 8 12 12 N 1.40160 * 119.99026 * 180.25632 * 11 10 9 13 13 C 1.34781 * 119.99604 * 213.55565 * 12 11 10 14 14 O 1.21301 * 119.99986 * 5.27829 * 13 12 11 15 15 C 1.50698 * 119.99728 * 185.27004 * 13 12 11 16 16 C 1.53000 * 109.46725 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.46845 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00211 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99979 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99974 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00230 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47084 * 89.99959 * 21 19 17 23 23 H 1.48494 * 109.47420 * 210.00001 * 21 19 17 24 24 H 1.48500 * 109.46907 * 330.00132 * 21 19 17 25 25 C 1.38846 * 120.01174 * 0.50567 * 11 10 9 26 26 C 1.38064 * 120.00492 * 359.76862 * 25 11 10 27 27 H 1.08993 * 109.46831 * 59.99968 * 1 2 3 28 28 H 1.09001 * 109.47200 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46896 * 299.99704 * 1 2 3 30 30 H 1.08999 * 109.47308 * 239.99650 * 2 1 3 31 31 H 1.09005 * 109.47453 * 120.00245 * 2 1 3 32 32 H 1.09001 * 109.47282 * 269.99501 * 7 6 3 33 33 H 1.09005 * 109.47095 * 29.99568 * 7 6 3 34 34 H 1.09001 * 109.47238 * 149.99865 * 7 6 3 35 35 H 1.08007 * 120.00076 * 359.97438 * 9 8 6 36 36 H 1.07996 * 119.99416 * 179.70348 * 10 9 8 37 37 H 0.96994 * 119.99911 * 33.55550 * 12 11 10 38 38 H 1.08994 * 109.47148 * 300.00376 * 15 13 12 39 39 H 1.09006 * 109.47026 * 60.00818 * 15 13 12 40 40 H 1.09002 * 109.47324 * 300.00328 * 16 15 13 41 41 H 1.08995 * 109.47397 * 60.00356 * 16 15 13 42 42 H 0.96997 * 119.99580 * 180.02562 * 20 19 17 43 43 H 1.08009 * 119.99896 * 179.74790 * 25 11 10 44 44 H 1.08002 * 120.00028 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3438 1.2371 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.5135 1.5013 1.2697 8 6 4.4816 1.5039 -1.2106 9 6 5.8124 1.8973 -1.2666 10 6 6.4989 1.8416 -2.4632 11 6 5.8619 1.3820 -3.6082 12 7 6.5606 1.3205 -4.8217 13 6 5.9149 1.5458 -5.9831 14 8 4.7534 1.8955 -5.9734 15 6 6.6360 1.3636 -7.2937 16 6 5.6838 1.6818 -8.4482 17 6 6.4048 1.4990 -9.7589 18 1 7.4385 1.1867 -9.7676 19 6 5.7445 1.7305 -10.9470 20 7 4.4855 2.1103 -10.9364 21 14 6.6383 1.5046 -12.5716 22 1 6.4707 0.1049 -13.0384 23 1 6.0721 2.4343 -13.5816 24 1 8.0828 1.7950 -12.3864 25 6 4.5316 0.9883 -3.5523 26 6 3.8432 1.0492 -2.3571 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 4.7844 2.5092 1.5844 33 1 3.8814 1.0411 2.0292 34 1 5.4174 0.9061 1.1398 35 1 6.3090 2.2510 -0.3750 36 1 7.5323 2.1520 -2.5077 37 1 7.5086 1.1157 -4.8256 38 1 7.4926 2.0365 -7.3337 39 1 6.9795 0.3326 -7.3792 40 1 4.8269 1.0093 -8.4083 41 1 5.3407 2.7128 -8.3626 42 1 4.0209 2.2728 -11.7723 43 1 4.0352 0.6346 -4.4440 44 1 2.8083 0.7433 -2.3138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598317121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:07 Heat of formation + Delta-G solvation = -106.582646 kcal Electronic energy + Delta-G solvation = -26885.045288 eV Core-core repulsion = 22928.547941 eV Total energy + Delta-G solvation = -3956.497347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55823 -40.10862 -38.44318 -37.41999 -37.14944 -35.56597 -35.03085 -34.16781 -33.00892 -32.07018 -30.08504 -27.91900 -27.01305 -25.18658 -24.21684 -23.87340 -22.65306 -21.10928 -20.31459 -19.10377 -18.99009 -18.67680 -17.85416 -17.68061 -17.36233 -16.77964 -16.48619 -16.47055 -15.74499 -15.47653 -15.33618 -15.16281 -14.94146 -14.59783 -14.31748 -14.16659 -14.14480 -13.91728 -13.65856 -13.53911 -13.51375 -13.34869 -13.24764 -13.17696 -12.88085 -12.81353 -12.51089 -12.47433 -12.24113 -11.91530 -11.79599 -11.63808 -11.49733 -11.29785 -10.79834 -10.59408 -10.53605 -9.95844 -8.65989 -8.17453 -6.31548 -1.00091 0.23296 0.37416 1.35349 1.42851 1.45633 1.56515 1.65976 2.14113 2.44624 2.61883 2.85050 2.93719 3.15876 3.39393 3.63494 3.73605 3.82984 3.95778 4.03070 4.27440 4.33029 4.41295 4.52036 4.52303 4.55983 4.59520 4.63190 4.71891 4.75869 4.85342 4.92258 5.01190 5.04411 5.08727 5.37300 5.42077 5.46329 5.51284 5.59156 5.63373 5.85963 6.05702 6.17584 6.53457 6.87382 7.26796 7.38910 8.95277 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021490 B = 0.002147 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.610784 B =13036.948039 C =13952.555745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.606 4.606 3 S 2.588 3.412 4 O -0.973 6.973 5 O -0.986 6.986 6 N -0.941 5.941 7 C 0.069 3.931 8 C 0.147 3.853 9 C -0.121 4.121 10 C -0.107 4.107 11 C 0.112 3.888 12 N -0.660 5.660 13 C 0.509 3.491 14 O -0.567 6.567 15 C -0.116 4.116 16 C 0.040 3.960 17 C -0.541 4.541 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.939 5.939 21 Si 0.975 3.025 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.254 1.254 25 C -0.113 4.113 26 C -0.152 4.152 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.147 0.853 31 H 0.169 0.831 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.430 0.570 38 H 0.111 0.889 39 H 0.112 0.888 40 H -0.017 1.017 41 H -0.019 1.019 42 H 0.262 0.738 43 H 0.109 0.891 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -8.147 30.921 32.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.740 4.740 3 S 2.687 3.313 4 O -0.964 6.964 5 O -0.976 6.976 6 N -0.767 5.767 7 C -0.073 4.073 8 C 0.051 3.949 9 C -0.143 4.143 10 C -0.128 4.128 11 C 0.017 3.983 12 N -0.308 5.308 13 C 0.299 3.701 14 O -0.445 6.445 15 C -0.155 4.155 16 C 0.002 3.998 17 C -0.579 4.579 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.798 3.202 22 H -0.197 1.197 23 H -0.214 1.214 24 H -0.177 1.177 25 C -0.134 4.134 26 C -0.174 4.174 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.098 0.902 30 H 0.165 0.835 31 H 0.187 0.813 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.184 0.816 36 H 0.184 0.816 37 H 0.270 0.730 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.001 0.999 41 H 0.000 1.000 42 H 0.071 0.929 43 H 0.127 0.873 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.480 -7.017 30.878 31.763 hybrid contribution 0.019 -0.490 -1.325 1.413 sum 2.499 -7.507 29.553 30.594 Atomic orbital electron populations 1.21725 0.89780 1.06868 1.03749 1.30365 1.07719 1.21484 1.14387 1.05742 0.72880 0.79545 0.73106 1.93566 1.82934 1.74345 1.45523 1.93642 1.83065 1.74918 1.45980 1.55369 1.25100 1.85661 1.10573 1.22053 0.99485 1.04293 0.81507 1.17511 0.93572 0.99402 0.84455 1.21007 0.92443 1.01534 0.99335 1.21096 1.02102 0.99220 0.90333 1.18019 0.92685 1.00896 0.86741 1.43517 1.13987 1.70039 1.03257 1.21638 0.87040 0.74713 0.86726 1.90707 1.19635 1.46192 1.87957 1.21656 0.99829 1.04970 0.89064 1.18711 0.93867 0.94616 0.92573 1.21718 0.98839 1.45839 0.91513 0.90307 1.26162 0.95634 0.94744 1.04092 1.70188 1.11993 1.47661 1.28071 0.85310 0.79136 0.78012 0.77710 1.19695 1.21405 1.17746 1.20893 0.94699 1.00361 0.97474 1.20889 1.00255 1.03932 0.92328 0.91577 0.87311 0.90182 0.83488 0.81327 0.91213 0.88415 0.87496 0.81558 0.81599 0.73037 0.87110 0.87033 0.99885 1.00026 0.92918 0.87266 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.92 71.98 0.71 -0.99 16 2 C -0.61 -6.24 6.76 71.98 0.49 -5.76 16 3 S 2.59 51.27 4.74 -56.49 -0.27 51.00 16 4 O -0.97 -22.82 17.09 -127.65 -2.18 -25.00 16 5 O -0.99 -29.81 15.17 -127.65 -1.94 -31.74 16 6 N -0.94 -15.79 3.33 -360.65 -1.20 -16.99 16 7 C 0.07 0.60 9.20 127.77 1.18 1.78 16 8 C 0.15 3.17 6.05 38.16 0.23 3.40 16 9 C -0.12 -2.10 9.13 22.38 0.20 -1.90 16 10 C -0.11 -2.03 9.96 22.37 0.22 -1.81 16 11 C 0.11 3.05 6.28 38.10 0.24 3.29 16 12 N -0.66 -17.73 5.35 -303.34 -1.62 -19.35 16 13 C 0.51 19.50 7.57 87.66 0.66 20.16 16 14 O -0.57 -28.10 13.67 -3.09 -0.04 -28.14 16 15 C -0.12 -4.47 5.64 29.85 0.17 -4.30 16 16 C 0.04 2.21 4.26 29.85 0.13 2.34 16 17 C -0.54 -30.54 9.11 25.60 0.23 -30.30 16 18 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 19 C -0.01 -0.53 5.46 84.65 0.46 -0.06 16 20 N -0.94 -60.05 13.29 21.45 0.28 -59.76 16 21 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.25 -10.61 7.11 99.48 0.71 -9.91 16 25 C -0.11 -3.66 8.65 22.37 0.19 -3.47 16 26 C -0.15 -4.18 8.42 22.38 0.19 -3.99 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.15 1.33 7.17 -2.39 -0.02 1.31 16 31 H 0.17 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.47 7.79 -2.38 -0.02 0.45 16 34 H 0.11 0.41 7.47 -2.39 -0.02 0.39 16 35 H 0.17 1.64 7.13 -2.91 -0.02 1.62 16 36 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.43 7.41 8.82 -92.71 -0.82 6.60 16 38 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 39 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 40 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 41 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 42 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 43 H 0.11 4.22 6.41 -2.91 -0.02 4.20 16 44 H 0.13 3.23 5.13 -2.91 -0.01 3.21 16 Total: -1.00 -92.35 377.11 0.57 -91.77 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.20 Total: 13.55 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 5.31 Total: -21.60 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -2.54 Total: -96.10 kcal Atomic # 8 Polarization: -80.72 SS G_CDS: -4.16 Total: -84.88 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 51.27 SS G_CDS: -0.27 Total: 51.00 kcal Total: -92.35 0.57 -91.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598317121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.810 kcal (2) G-P(sol) polarization free energy of solvation -92.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds