Wall clock time and date at job start Sat Apr 11 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00084 * 2 1 4 4 C 1.53004 * 109.47101 * 85.00318 * 3 2 1 5 5 C 1.53001 * 109.47132 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.46923 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99983 * 179.97438 * 6 5 4 8 8 O 1.21607 * 119.99826 * 0.02562 * 7 6 5 9 9 C 1.47437 * 120.00283 * 180.02562 * 7 6 5 10 10 C 1.39227 * 120.27694 * 355.71167 * 9 7 6 11 11 C 1.38223 * 120.09019 * 180.27968 * 10 9 7 12 12 C 1.38827 * 120.67436 * 359.69359 * 11 10 9 13 13 C 1.37596 * 120.57166 * 0.02562 * 12 11 10 14 14 C 1.40714 * 119.88143 * 0.02562 * 13 12 11 15 15 C 1.40885 * 120.33020 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00278 * 216.32858 * 15 14 13 17 17 C 1.40279 * 119.99934 * 36.32229 * 15 14 13 18 18 N 1.30628 * 120.00021 * 190.51200 * 17 15 14 19 19 Si 1.86805 * 119.99864 * 10.51087 * 17 15 14 20 20 H 1.48495 * 109.47237 * 267.22291 * 19 17 15 21 21 H 1.48498 * 109.47138 * 27.22377 * 19 17 15 22 22 H 1.48504 * 109.46514 * 147.22203 * 19 17 15 23 23 S 1.65600 * 120.00039 * 180.02562 * 2 1 3 24 24 C 1.81405 * 104.44795 * 269.99876 * 23 2 1 25 25 O 1.42103 * 104.27528 * 26.06462 * 23 2 1 26 26 O 1.42093 * 104.27865 * 153.92592 * 23 2 1 27 27 H 1.09001 * 109.47367 * 89.99697 * 1 2 3 28 28 H 1.08999 * 109.47147 * 209.99851 * 1 2 3 29 29 H 1.09000 * 109.47140 * 329.99872 * 1 2 3 30 30 H 1.09001 * 109.47408 * 325.00561 * 3 2 1 31 31 H 1.09001 * 109.47290 * 205.00241 * 3 2 1 32 32 H 1.09001 * 109.46791 * 59.99865 * 4 3 2 33 33 H 1.09001 * 109.46985 * 300.00109 * 4 3 2 34 34 H 1.09001 * 109.47351 * 60.00259 * 5 4 3 35 35 H 1.09001 * 109.47316 * 299.99957 * 5 4 3 36 36 H 0.97001 * 120.00283 * 0.02562 * 6 5 4 37 37 H 1.08002 * 119.96175 * 359.97438 * 10 9 7 38 38 H 1.08002 * 119.66391 * 179.71666 * 11 10 9 39 39 H 1.08000 * 119.71712 * 180.02562 * 12 11 10 40 40 H 1.07999 * 120.06224 * 180.02562 * 13 12 11 41 41 H 0.96995 * 120.00424 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.47200 * 59.99489 * 24 23 2 43 43 H 1.08997 * 109.46805 * 179.97438 * 24 23 2 44 44 H 1.09001 * 109.46640 * 299.99740 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7732 1.4371 5 6 3.1093 3.0979 1.4371 6 7 3.2487 3.5812 2.8131 7 6 3.8935 4.7390 3.0585 8 8 4.3591 5.3826 2.1378 9 6 4.0343 5.2252 4.4433 10 6 3.4276 4.5404 5.4928 11 6 3.5574 5.0029 6.7889 12 6 4.2954 6.1465 7.0622 13 6 4.9113 6.8413 6.0467 14 6 4.7939 6.3922 4.7184 15 6 5.4201 7.0967 3.6712 16 1 4.9361 7.1768 2.7091 17 6 6.6723 7.6941 3.8783 18 7 7.1600 8.5147 2.9866 19 14 7.6424 7.3161 5.4294 20 1 7.3299 8.3302 6.4681 21 1 7.2731 5.9669 5.9277 22 1 9.0955 7.3508 5.1250 23 16 2.2930 -1.4341 -0.0006 24 6 2.5193 -1.8269 1.7559 25 8 1.3969 -2.3559 -0.6062 26 8 3.5394 -1.1189 -0.6058 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6501 2.0043 -0.5894 31 1 3.1857 1.1177 -0.4343 32 1 2.8911 1.0375 2.0264 33 1 1.3554 1.9242 1.8714 34 1 2.5623 3.8337 0.8477 35 1 4.0975 2.9464 1.0029 36 1 2.8776 3.0676 3.5475 37 1 2.8507 3.6494 5.2935 38 1 3.0800 4.4689 7.5972 39 1 4.3870 6.4939 8.0807 40 1 5.4838 7.7298 6.2688 41 1 8.0260 8.9275 3.1296 42 1 1.5451 -1.9196 2.2359 43 1 3.0618 -2.7675 1.8508 44 1 3.0867 -1.0296 2.2362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600994830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:17 Heat of formation + Delta-G solvation = -81.760760 kcal Electronic energy + Delta-G solvation = -26981.924270 eV Core-core repulsion = 23026.503281 eV Total energy + Delta-G solvation = -3955.420989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.14372 -37.64894 -37.40357 -36.87942 -36.25061 -34.59613 -33.63314 -31.60987 -30.49045 -29.89399 -29.82915 -27.19487 -25.52377 -24.50071 -22.39453 -21.83600 -20.91789 -19.55071 -19.15511 -18.04488 -17.62508 -16.87771 -16.69526 -16.59006 -15.45802 -15.43896 -15.29556 -14.75088 -14.32336 -14.13344 -14.07033 -13.93836 -13.71739 -13.56161 -13.52556 -13.04992 -12.71156 -12.68414 -12.57196 -12.40632 -12.34831 -12.11323 -12.01565 -11.86171 -11.52666 -11.50527 -11.35874 -10.97591 -10.93188 -10.72933 -10.47258 -10.20259 -9.83800 -9.46254 -9.28318 -8.51354 -8.45976 -7.85493 -7.62389 -6.92780 -4.51343 -0.11069 2.07170 2.22155 2.56911 3.06429 3.15621 3.26430 3.49871 3.73349 3.82825 3.92757 3.98622 4.21904 4.44909 4.53801 4.57101 4.74865 4.89060 4.94308 5.10947 5.19017 5.29530 5.36496 5.39781 5.45527 5.63526 5.70343 5.74789 5.85184 5.97404 6.03615 6.13127 6.16032 6.37051 6.47452 6.76310 7.03587 7.06901 7.19999 7.35563 7.55232 7.72427 7.98249 8.26838 8.45133 8.60901 8.83762 9.32477 10.03858 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.002376 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.597054 B =11781.874436 C =12323.507516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.002 6.002 3 C 0.115 3.885 4 C -0.155 4.155 5 C 0.126 3.874 6 N -0.750 5.750 7 C 0.560 3.440 8 O -0.527 6.527 9 C -0.250 4.250 10 C -0.041 4.041 11 C -0.256 4.256 12 C -0.066 4.066 13 C -0.225 4.225 14 C 0.116 3.884 15 C -0.400 4.400 16 H 0.124 0.876 17 C 0.078 3.922 18 N -0.792 5.792 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.243 1.243 22 H -0.288 1.288 23 S 2.609 3.391 24 C -0.675 4.675 25 O -0.958 6.958 26 O -0.951 6.951 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.390 0.610 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.287 0.713 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.924 -16.951 -0.615 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.839 5.839 3 C -0.011 4.011 4 C -0.194 4.194 5 C 0.001 3.999 6 N -0.406 5.406 7 C 0.353 3.647 8 O -0.404 6.404 9 C -0.255 4.255 10 C -0.060 4.060 11 C -0.275 4.275 12 C -0.084 4.084 13 C -0.244 4.244 14 C 0.111 3.889 15 C -0.427 4.427 16 H 0.142 0.858 17 C -0.142 4.142 18 N -0.415 5.415 19 Si 0.733 3.267 20 H -0.194 1.194 21 H -0.166 1.166 22 H -0.216 1.216 23 S 2.702 3.298 24 C -0.825 4.825 25 O -0.948 6.948 26 O -0.941 6.941 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.225 0.775 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.132 -16.756 -2.243 19.709 hybrid contribution 0.186 -0.180 1.942 1.960 sum -9.946 -16.936 -0.301 19.643 Atomic orbital electron populations 1.21470 0.78182 1.02936 1.02554 1.57413 1.15219 1.21430 1.89839 1.21388 0.98311 0.84846 0.96538 1.22315 1.01597 0.97685 0.97852 1.21029 1.00201 0.93645 0.85064 1.45970 1.61372 1.25581 1.07631 1.18354 0.77160 0.79450 0.89708 1.90735 1.47343 1.56036 1.46267 1.19396 1.14587 1.00471 0.91038 1.20754 0.95868 0.96430 0.92969 1.20277 1.10130 1.01577 0.95534 1.20738 0.95852 0.94632 0.97208 1.21157 1.07509 1.02045 0.93698 1.17553 0.90373 0.89010 0.91960 1.20207 1.01121 1.20635 1.00744 0.85819 1.26396 0.98609 0.91560 0.97667 1.69564 1.17918 1.19565 1.34422 0.86384 0.77314 0.81905 0.81073 1.19423 1.16566 1.21567 1.04967 0.73982 0.73276 0.77623 1.30631 1.11771 1.12326 1.27749 1.93607 1.64744 1.62746 1.73693 1.93620 1.44089 1.82811 1.73623 0.92145 0.91251 0.90725 0.89228 0.88112 0.91569 0.90595 0.91706 0.91588 0.77540 0.88806 0.88595 0.88590 0.87783 0.90206 0.85433 0.85441 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 10.22 59.85 0.61 1.13 16 2 N -1.00 -7.27 3.12 -121.76 -0.38 -7.64 16 3 C 0.11 0.92 5.64 -4.04 -0.02 0.89 16 4 C -0.15 -1.30 5.65 -26.73 -0.15 -1.45 16 5 C 0.13 1.63 5.67 -4.04 -0.02 1.61 16 6 N -0.75 -11.87 5.51 -61.38 -0.34 -12.21 16 7 C 0.56 12.25 7.72 -12.51 -0.10 12.16 16 8 O -0.53 -13.65 13.54 5.27 0.07 -13.58 16 9 C -0.25 -5.69 5.92 -104.37 -0.62 -6.31 16 10 C -0.04 -0.79 9.52 -39.22 -0.37 -1.16 16 11 C -0.26 -4.86 10.03 -39.37 -0.39 -5.26 16 12 C -0.07 -1.34 10.01 -39.60 -0.40 -1.73 16 13 C -0.23 -5.23 7.00 -38.88 -0.27 -5.50 16 14 C 0.12 2.93 5.03 -106.54 -0.54 2.40 16 15 C -0.40 -11.10 8.31 -37.81 -0.31 -11.41 16 16 H 0.12 3.80 5.96 -52.49 -0.31 3.48 16 17 C 0.08 2.07 5.47 -17.30 -0.09 1.98 16 18 N -0.79 -21.36 13.92 55.56 0.77 -20.58 16 19 Si 0.91 20.53 24.52 -169.99 -4.17 16.36 16 20 H -0.27 -5.77 6.76 56.52 0.38 -5.39 16 21 H -0.24 -5.61 6.73 56.52 0.38 -5.23 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 S 2.61 21.49 6.02 -107.50 -0.65 20.85 16 24 C -0.68 -3.36 10.99 101.05 1.11 -2.25 16 25 O -0.96 -10.60 17.09 -57.54 -0.98 -11.58 16 26 O -0.95 -11.38 16.53 -57.54 -0.95 -12.33 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.30 7.79 -51.93 -0.40 -0.11 16 29 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 30 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 31 H 0.10 0.91 6.82 -51.93 -0.35 0.56 16 32 H 0.07 0.48 6.96 -51.93 -0.36 0.12 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.39 5.05 6.52 -40.82 -0.27 4.78 16 37 H 0.09 1.41 6.42 -52.49 -0.34 1.07 16 38 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.10 2.39 5.01 -52.49 -0.26 2.13 16 41 H 0.29 6.95 8.29 -40.82 -0.34 6.61 16 42 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.13 0.60 6.96 -51.92 -0.36 0.24 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -35.43 369.91 -8.68 -44.11 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.06 Total: 5.93 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -1.57 Total: -14.90 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.06 Total: -40.44 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.86 Total: -37.48 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.17 Total: 16.36 kcal Atomic # 16 Polarization: 21.49 SS G_CDS: -0.65 Total: 20.85 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.43 -8.68 -44.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600994830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.652 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds