Wall clock time and date at job start Sat Apr 11 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00084 * 2 1 4 4 C 1.53004 * 109.47101 * 85.00318 * 3 2 1 5 5 C 1.53001 * 109.47132 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.46923 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99983 * 179.97438 * 6 5 4 8 8 O 1.21607 * 119.99826 * 0.02562 * 7 6 5 9 9 C 1.47437 * 120.00283 * 180.02562 * 7 6 5 10 10 C 1.39227 * 120.27694 * 355.71167 * 9 7 6 11 11 C 1.38223 * 120.09019 * 180.27968 * 10 9 7 12 12 C 1.38827 * 120.67436 * 359.69359 * 11 10 9 13 13 C 1.37596 * 120.57166 * 0.02562 * 12 11 10 14 14 C 1.40714 * 119.88143 * 0.02562 * 13 12 11 15 15 C 1.40885 * 120.33020 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00278 * 216.32858 * 15 14 13 17 17 C 1.40279 * 119.99934 * 36.32229 * 15 14 13 18 18 N 1.30628 * 120.00021 * 190.51200 * 17 15 14 19 19 Si 1.86805 * 119.99864 * 10.51087 * 17 15 14 20 20 H 1.48495 * 109.47237 * 267.22291 * 19 17 15 21 21 H 1.48498 * 109.47138 * 27.22377 * 19 17 15 22 22 H 1.48504 * 109.46514 * 147.22203 * 19 17 15 23 23 S 1.65600 * 120.00039 * 180.02562 * 2 1 3 24 24 C 1.81405 * 104.44795 * 269.99876 * 23 2 1 25 25 O 1.42103 * 104.27528 * 26.06462 * 23 2 1 26 26 O 1.42093 * 104.27865 * 153.92592 * 23 2 1 27 27 H 1.09001 * 109.47367 * 89.99697 * 1 2 3 28 28 H 1.08999 * 109.47147 * 209.99851 * 1 2 3 29 29 H 1.09000 * 109.47140 * 329.99872 * 1 2 3 30 30 H 1.09001 * 109.47408 * 325.00561 * 3 2 1 31 31 H 1.09001 * 109.47290 * 205.00241 * 3 2 1 32 32 H 1.09001 * 109.46791 * 59.99865 * 4 3 2 33 33 H 1.09001 * 109.46985 * 300.00109 * 4 3 2 34 34 H 1.09001 * 109.47351 * 60.00259 * 5 4 3 35 35 H 1.09001 * 109.47316 * 299.99957 * 5 4 3 36 36 H 0.97001 * 120.00283 * 0.02562 * 6 5 4 37 37 H 1.08002 * 119.96175 * 359.97438 * 10 9 7 38 38 H 1.08002 * 119.66391 * 179.71666 * 11 10 9 39 39 H 1.08000 * 119.71712 * 180.02562 * 12 11 10 40 40 H 1.07999 * 120.06224 * 180.02562 * 13 12 11 41 41 H 0.96995 * 120.00424 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.47200 * 59.99489 * 24 23 2 43 43 H 1.08997 * 109.46805 * 179.97438 * 24 23 2 44 44 H 1.09001 * 109.46640 * 299.99740 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7732 1.4371 5 6 3.1093 3.0979 1.4371 6 7 3.2487 3.5812 2.8131 7 6 3.8935 4.7390 3.0585 8 8 4.3591 5.3826 2.1378 9 6 4.0343 5.2252 4.4433 10 6 3.4276 4.5404 5.4928 11 6 3.5574 5.0029 6.7889 12 6 4.2954 6.1465 7.0622 13 6 4.9113 6.8413 6.0467 14 6 4.7939 6.3922 4.7184 15 6 5.4201 7.0967 3.6712 16 1 4.9361 7.1768 2.7091 17 6 6.6723 7.6941 3.8783 18 7 7.1600 8.5147 2.9866 19 14 7.6424 7.3161 5.4294 20 1 7.3299 8.3302 6.4681 21 1 7.2731 5.9669 5.9277 22 1 9.0955 7.3508 5.1250 23 16 2.2930 -1.4341 -0.0006 24 6 2.5193 -1.8269 1.7559 25 8 1.3969 -2.3559 -0.6062 26 8 3.5394 -1.1189 -0.6058 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6501 2.0043 -0.5894 31 1 3.1857 1.1177 -0.4343 32 1 2.8911 1.0375 2.0264 33 1 1.3554 1.9242 1.8714 34 1 2.5623 3.8337 0.8477 35 1 4.0975 2.9464 1.0029 36 1 2.8776 3.0676 3.5475 37 1 2.8507 3.6494 5.2935 38 1 3.0800 4.4689 7.5972 39 1 4.3870 6.4939 8.0807 40 1 5.4838 7.7298 6.2688 41 1 8.0260 8.9275 3.1296 42 1 1.5451 -1.9196 2.2359 43 1 3.0618 -2.7675 1.8508 44 1 3.0867 -1.0296 2.2362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600994830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:16 Heat of formation + Delta-G solvation = -110.341063 kcal Electronic energy + Delta-G solvation = -26983.163605 eV Core-core repulsion = 23026.503281 eV Total energy + Delta-G solvation = -3956.660324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78849 -38.86960 -38.27703 -37.91034 -37.01055 -35.97157 -35.37318 -32.82298 -32.26094 -31.25881 -30.29172 -28.00659 -27.11008 -25.51143 -23.90112 -22.94825 -22.43517 -21.09219 -19.84161 -19.44056 -18.67261 -18.30494 -17.45078 -17.35617 -17.12947 -16.63543 -16.45615 -15.85055 -15.78963 -15.43404 -15.26191 -15.14727 -14.82603 -14.46623 -14.26332 -14.04171 -13.96698 -13.86237 -13.67500 -13.47189 -13.25956 -13.19276 -13.14009 -12.79443 -12.75832 -12.65277 -12.48924 -12.29088 -12.16203 -12.02922 -11.94054 -11.65924 -11.59522 -11.07182 -10.34462 -9.97722 -9.94839 -9.48705 -9.38828 -8.80885 -6.46840 -0.70453 0.37033 0.85990 1.24107 1.37824 1.46696 1.62702 2.10450 2.29243 2.48297 2.73644 2.93918 3.17068 3.56187 3.66554 3.99533 4.03275 4.13157 4.17963 4.22822 4.28765 4.33894 4.47840 4.54606 4.63935 4.73662 4.74619 4.83370 4.89493 4.93558 5.01246 5.04325 5.06172 5.20378 5.30673 5.31735 5.49701 5.58938 5.67388 5.71636 5.89788 5.99146 6.29845 6.50145 6.70421 6.81529 6.96413 7.69309 8.23397 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.002376 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.597054 B =11781.874436 C =12323.507516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.000 6.000 3 C 0.115 3.885 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.724 5.724 7 C 0.551 3.449 8 O -0.580 6.580 9 C -0.265 4.265 10 C -0.037 4.037 11 C -0.230 4.230 12 C -0.063 4.063 13 C -0.248 4.248 14 C 0.098 3.902 15 C -0.450 4.450 16 H 0.072 0.928 17 C 0.034 3.966 18 N -0.851 5.851 19 Si 0.968 3.032 20 H -0.249 1.249 21 H -0.248 1.248 22 H -0.282 1.282 23 S 2.609 3.391 24 C -0.654 4.654 25 O -0.993 6.993 26 O -0.999 6.999 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.410 0.590 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.292 0.708 42 H 0.154 0.846 43 H 0.142 0.858 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.317 -20.214 3.983 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.837 5.837 3 C -0.011 4.011 4 C -0.179 4.179 5 C -0.004 4.004 6 N -0.379 5.379 7 C 0.344 3.656 8 O -0.461 6.461 9 C -0.270 4.270 10 C -0.056 4.056 11 C -0.249 4.249 12 C -0.082 4.082 13 C -0.267 4.267 14 C 0.094 3.906 15 C -0.479 4.479 16 H 0.090 0.910 17 C -0.179 4.179 18 N -0.478 5.478 19 Si 0.790 3.210 20 H -0.174 1.174 21 H -0.171 1.171 22 H -0.209 1.209 23 S 2.706 3.294 24 C -0.808 4.808 25 O -0.983 6.983 26 O -0.989 6.989 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.248 0.752 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.173 0.827 43 H 0.160 0.840 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.584 -20.062 2.335 23.797 hybrid contribution 0.617 0.565 0.659 1.065 sum -11.967 -19.497 2.994 23.072 Atomic orbital electron populations 1.21679 0.76951 1.04616 1.02684 1.57213 1.15881 1.20430 1.90215 1.21285 0.97895 0.85406 0.96497 1.22217 1.02299 0.94984 0.98428 1.21183 0.99994 0.96004 0.83172 1.45686 1.59163 1.23524 1.09563 1.18552 0.77225 0.80681 0.89180 1.90742 1.49692 1.57976 1.47662 1.19828 1.14142 1.00288 0.92741 1.21250 0.94965 0.97396 0.91986 1.20962 1.07196 1.00096 0.96656 1.21255 0.94192 0.94466 0.98244 1.21246 1.08991 1.02899 0.93576 1.17838 0.90622 0.89626 0.92524 1.19954 1.03112 1.25077 0.99800 0.90996 1.27127 0.98986 0.91219 1.00611 1.69628 1.19040 1.22308 1.36802 0.85478 0.76090 0.81528 0.77893 1.17376 1.17141 1.20869 1.04701 0.72639 0.72879 0.79213 1.30434 1.13869 1.13463 1.23018 1.93558 1.65288 1.63646 1.75851 1.93563 1.45917 1.83391 1.76067 0.93012 0.89687 0.88862 0.88644 0.89798 0.89629 0.88038 0.92674 0.93520 0.75239 0.83706 0.83682 0.84752 0.88281 0.89716 0.82747 0.83984 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.22 127.77 1.31 2.04 16 2 N -1.00 -12.58 3.12 -539.13 -1.68 -14.26 16 3 C 0.12 1.69 5.64 86.38 0.49 2.18 16 4 C -0.14 -1.90 5.65 30.60 0.17 -1.73 16 5 C 0.12 3.04 5.67 86.38 0.49 3.53 16 6 N -0.72 -21.46 5.51 -466.35 -2.57 -24.03 16 7 C 0.55 24.37 7.72 86.67 0.67 25.04 16 8 O -0.58 -32.20 13.54 -4.05 -0.05 -32.25 16 9 C -0.27 -11.77 5.92 -19.70 -0.12 -11.89 16 10 C -0.04 -1.23 9.52 22.50 0.21 -1.02 16 11 C -0.23 -7.18 10.03 22.41 0.22 -6.96 16 12 C -0.06 -2.26 10.01 22.26 0.22 -2.04 16 13 C -0.25 -11.18 7.00 22.72 0.16 -11.02 16 14 C 0.10 5.04 5.03 -21.11 -0.11 4.94 16 15 C -0.45 -26.94 8.31 23.41 0.19 -26.75 16 16 H 0.07 4.93 5.96 -2.91 -0.02 4.91 16 17 C 0.03 1.94 5.47 85.37 0.47 2.40 16 18 N -0.85 -49.90 13.92 21.88 0.30 -49.59 16 19 Si 0.97 43.66 24.52 68.60 1.68 45.34 16 20 H -0.25 -10.26 6.76 99.48 0.67 -9.59 16 21 H -0.25 -11.15 6.73 99.48 0.67 -10.48 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 S 2.61 39.49 6.02 -56.49 -0.34 39.15 16 24 C -0.65 -3.79 10.99 113.37 1.25 -2.54 16 25 O -0.99 -21.24 17.09 -127.65 -2.18 -23.43 16 26 O -1.00 -24.09 16.53 -127.65 -2.11 -26.20 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 0.47 7.79 -2.39 -0.02 0.46 16 29 H 0.09 0.46 8.07 -2.39 -0.02 0.45 16 30 H 0.10 1.27 8.11 -2.39 -0.02 1.25 16 31 H 0.08 1.54 6.82 -2.39 -0.02 1.52 16 32 H 0.09 0.87 6.96 -2.39 -0.02 0.85 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.41 8.66 6.52 -92.71 -0.60 8.05 16 37 H 0.15 3.26 6.42 -2.91 -0.02 3.24 16 38 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 39 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 40 H 0.10 4.49 5.01 -2.91 -0.01 4.48 16 41 H 0.29 15.32 8.29 -92.71 -0.77 14.55 16 42 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.14 0.60 6.96 -2.39 -0.02 0.58 16 Total: -1.00 -87.32 369.91 -0.96 -88.28 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.35 Total: 20.80 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 5.63 Total: -23.82 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -3.94 Total: -87.88 kcal Atomic # 8 Polarization: -77.54 SS G_CDS: -4.35 Total: -81.88 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.68 Total: 45.34 kcal Atomic # 16 Polarization: 39.49 SS G_CDS: -0.34 Total: 39.15 kcal Total: -87.32 -0.96 -88.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600994830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.059 kcal (2) G-P(sol) polarization free energy of solvation -87.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds