Wall clock time and date at job start Sat Apr 11 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81401 * 109.46948 * 2 1 4 4 O 1.42097 * 110.54323 * 68.37720 * 3 2 1 5 5 O 1.42102 * 110.54268 * 291.61975 * 3 2 1 6 6 N 1.65606 * 104.44862 * 179.97438 * 3 2 1 7 7 C 1.46496 * 119.99793 * 64.99981 * 6 3 2 8 8 C 1.53004 * 109.47101 * 165.00088 * 7 6 3 9 9 C 1.53001 * 109.47132 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46923 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99983 * 179.97438 * 10 9 8 12 12 O 1.21607 * 119.99826 * 0.02562 * 11 10 9 13 13 C 1.47437 * 120.00283 * 180.02562 * 11 10 9 14 14 C 1.39227 * 120.27694 * 355.71167 * 13 11 10 15 15 C 1.38223 * 120.09019 * 180.27968 * 14 13 11 16 16 C 1.38827 * 120.67436 * 359.69359 * 15 14 13 17 17 C 1.37596 * 120.57166 * 0.02562 * 16 15 14 18 18 C 1.40714 * 119.88143 * 0.02562 * 17 16 15 19 19 C 1.40885 * 120.33020 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00278 * 216.32858 * 19 18 17 21 21 C 1.40279 * 119.99934 * 36.32229 * 19 18 17 22 22 N 1.30628 * 120.00021 * 190.51200 * 21 19 18 23 23 Si 1.86805 * 119.99864 * 10.51087 * 21 19 18 24 24 H 1.48495 * 109.47237 * 267.22291 * 23 21 19 25 25 H 1.48498 * 109.47138 * 27.22377 * 23 21 19 26 26 H 1.48504 * 109.46514 * 147.22203 * 23 21 19 27 27 H 1.09005 * 109.46805 * 60.00138 * 1 2 3 28 28 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47365 * 300.00131 * 1 2 3 30 30 H 1.09000 * 109.47052 * 239.99839 * 2 1 3 31 31 H 1.08992 * 109.46876 * 120.00082 * 2 1 3 32 32 H 0.96993 * 119.99682 * 245.00151 * 6 3 2 33 33 H 1.09001 * 109.47408 * 45.00331 * 7 6 3 34 34 H 1.09001 * 109.47290 * 285.00010 * 7 6 3 35 35 H 1.09001 * 109.46791 * 59.99865 * 8 7 6 36 36 H 1.09001 * 109.46985 * 300.00109 * 8 7 6 37 37 H 1.09001 * 109.47351 * 60.00259 * 9 8 7 38 38 H 1.09001 * 109.47316 * 299.99957 * 9 8 7 39 39 H 0.97001 * 120.00283 * 0.02562 * 10 9 8 40 40 H 1.08002 * 119.96175 * 359.97438 * 14 13 11 41 41 H 1.08002 * 119.66391 * 179.71666 * 15 14 13 42 42 H 1.08000 * 119.71712 * 180.02562 * 16 15 14 43 43 H 1.07999 * 120.06224 * 180.02562 * 17 16 15 44 44 H 0.96995 * 120.00424 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.4675 0.9669 -1.1488 8 6 5.9627 1.2834 -1.0749 9 6 6.6763 0.6579 -2.2750 10 7 8.1078 0.9615 -2.2046 11 6 8.9405 0.5091 -3.1628 12 8 8.5036 -0.1507 -4.0862 13 6 10.3812 0.8141 -3.0917 14 6 10.8746 1.6425 -2.0873 15 6 12.2252 1.9305 -2.0277 16 6 13.1051 1.3961 -2.9590 17 6 12.6482 0.5695 -3.9597 18 6 11.2777 0.2614 -4.0433 19 6 10.7995 -0.5834 -5.0643 20 1 9.8366 -0.3939 -5.5153 21 6 11.5740 -1.6707 -5.4953 22 7 11.2341 -2.3291 -6.5710 23 14 13.0916 -2.1769 -4.5308 24 1 14.2858 -1.4978 -5.0946 25 1 12.9264 -1.7870 -3.1075 26 1 13.2689 -3.6484 -4.6236 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.2982 1.8766 0.7622 33 1 4.0546 1.3766 -2.0706 34 1 4.3237 -0.1134 -1.1349 35 1 6.3756 0.8737 -0.1530 36 1 6.1065 2.3638 -1.0888 37 1 6.2634 1.0672 -3.1971 38 1 6.5325 -0.4225 -2.2607 39 1 8.4564 1.4875 -1.4679 40 1 10.2005 2.0646 -1.3567 41 1 12.5998 2.5776 -1.2484 42 1 14.1575 1.6310 -2.8977 43 1 13.3400 0.1580 -4.6796 44 1 11.7694 -3.0812 -6.8689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601024292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:21 Heat of formation + Delta-G solvation = -96.553787 kcal Electronic energy + Delta-G solvation = -26340.731922 eV Core-core repulsion = 22384.669459 eV Total energy + Delta-G solvation = -3956.062463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -39.13741 -37.52723 -37.26338 -36.50673 -36.26414 -34.30693 -33.62221 -33.57521 -31.18520 -30.48410 -29.60070 -25.79454 -24.81913 -24.53571 -22.44335 -21.94400 -20.93136 -19.67573 -19.48736 -18.07485 -17.59772 -16.97178 -16.71718 -16.56269 -15.86527 -15.69719 -15.34298 -14.95365 -14.53252 -14.19499 -14.13079 -14.07436 -13.70054 -13.57733 -13.05179 -12.99916 -12.85598 -12.62902 -12.49243 -12.44645 -12.33991 -12.05970 -12.01768 -11.81765 -11.59395 -11.57449 -11.23683 -10.99439 -10.96124 -10.72539 -10.46877 -10.19399 -9.85059 -9.83434 -9.28229 -8.52297 -8.46623 -7.84718 -7.61933 -6.92730 -4.51166 -0.13397 2.07565 2.32739 2.57591 3.06412 3.14972 3.26179 3.37884 3.74320 3.83452 3.92607 3.98540 4.11294 4.34753 4.55039 4.56975 4.68764 4.73075 4.82466 5.06935 5.18267 5.23555 5.33467 5.36273 5.42597 5.44571 5.66074 5.75387 5.87367 5.98605 6.01697 6.12764 6.37240 6.48201 6.56329 6.76806 7.03272 7.07210 7.20405 7.36449 7.56136 7.72857 7.98846 8.26785 8.45246 8.61241 8.83999 9.32016 10.03929 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020244 B = 0.002052 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.796622 B =13644.165422 C =14567.232660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.633 4.633 3 S 2.613 3.387 4 O -0.960 6.960 5 O -0.953 6.953 6 N -1.120 6.120 7 C 0.115 3.885 8 C -0.137 4.137 9 C 0.125 3.875 10 N -0.750 5.750 11 C 0.561 3.439 12 O -0.527 6.527 13 C -0.250 4.250 14 C -0.041 4.041 15 C -0.255 4.255 16 C -0.065 4.065 17 C -0.225 4.225 18 C 0.116 3.884 19 C -0.401 4.401 20 H 0.124 0.876 21 C 0.078 3.922 22 N -0.792 5.792 23 Si 0.907 3.093 24 H -0.268 1.268 25 H -0.243 1.243 26 H -0.289 1.289 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.418 0.582 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.392 0.608 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.124 2.889 14.017 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.762 4.762 3 S 2.704 3.296 4 O -0.950 6.950 5 O -0.943 6.943 6 N -0.880 5.880 7 C -0.012 4.012 8 C -0.177 4.177 9 C 0.000 4.000 10 N -0.405 5.405 11 C 0.354 3.646 12 O -0.405 6.405 13 C -0.255 4.255 14 C -0.060 4.060 15 C -0.274 4.274 16 C -0.084 4.084 17 C -0.244 4.244 18 C 0.111 3.889 19 C -0.428 4.428 20 H 0.142 0.858 21 C -0.142 4.142 22 N -0.416 5.416 23 Si 0.733 3.267 24 H -0.194 1.194 25 H -0.166 1.166 26 H -0.216 1.216 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.253 0.747 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.226 0.774 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.067 2.913 12.923 20.063 hybrid contribution 1.361 -0.730 1.059 1.873 sum -13.707 2.183 13.982 19.701 Atomic orbital electron populations 1.21508 0.90431 1.05180 1.03512 1.30503 1.07369 1.26504 1.11847 1.04954 0.73108 0.77183 0.74306 1.93608 1.83175 1.73046 1.45213 1.93621 1.83277 1.71902 1.45506 1.55563 1.26000 1.78202 1.28208 1.21277 0.93727 0.97752 0.88411 1.21949 0.93543 1.02521 0.99646 1.21038 0.81635 1.00122 0.97193 1.45953 1.06983 1.58655 1.28916 1.18350 0.86406 0.78789 0.81054 1.90731 1.77618 1.38756 1.33378 1.19398 0.92135 1.12419 1.01569 1.20771 0.94920 0.95042 0.95281 1.20289 0.93506 1.09809 1.03814 1.20744 0.97624 0.95902 0.94145 1.21156 0.96171 1.05223 1.01866 1.17556 0.90260 0.91097 0.89948 1.20202 1.05522 1.06098 1.10964 0.85817 1.26394 0.98019 0.96177 0.93633 1.69567 1.37101 1.16255 1.18648 0.86388 0.80645 0.76689 0.82965 1.19407 1.16571 1.21611 0.90829 0.89938 0.90965 0.84860 0.84888 0.74720 0.89581 0.91306 0.90538 0.90306 0.91645 0.91751 0.77400 0.88707 0.88539 0.88570 0.87781 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.92 37.16 0.37 -0.36 16 2 C -0.63 -3.05 6.79 37.16 0.25 -2.80 16 3 S 2.61 20.50 5.46 -107.50 -0.59 19.91 16 4 O -0.96 -10.47 18.08 -57.54 -1.04 -11.51 16 5 O -0.95 -11.10 17.50 -57.54 -1.01 -12.11 16 6 N -1.12 -7.39 5.89 -10.61 -0.06 -7.45 16 7 C 0.11 0.83 6.13 -4.04 -0.02 0.80 16 8 C -0.14 -1.15 5.47 -26.73 -0.15 -1.30 16 9 C 0.13 1.61 5.67 -4.04 -0.02 1.58 16 10 N -0.75 -11.91 5.51 -61.38 -0.34 -12.24 16 11 C 0.56 12.28 7.72 -12.51 -0.10 12.18 16 12 O -0.53 -13.62 13.54 5.27 0.07 -13.55 16 13 C -0.25 -5.72 5.92 -104.37 -0.62 -6.34 16 14 C -0.04 -0.80 9.52 -39.22 -0.37 -1.17 16 15 C -0.25 -4.88 10.03 -39.37 -0.39 -5.28 16 16 C -0.07 -1.34 10.01 -39.60 -0.40 -1.74 16 17 C -0.23 -5.25 7.00 -38.88 -0.27 -5.52 16 18 C 0.12 2.95 5.03 -106.54 -0.54 2.41 16 19 C -0.40 -11.11 8.31 -37.81 -0.31 -11.43 16 20 H 0.12 3.80 5.96 -52.49 -0.31 3.48 16 21 C 0.08 2.07 5.47 -17.30 -0.09 1.97 16 22 N -0.79 -21.31 13.92 55.56 0.77 -20.54 16 23 Si 0.91 20.46 24.52 -169.99 -4.17 16.30 16 24 H -0.27 -5.76 6.76 56.52 0.38 -5.38 16 25 H -0.24 -5.59 6.73 56.52 0.38 -5.21 16 26 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.13 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.42 2.22 8.62 -34.47 -0.30 1.92 16 33 H 0.09 0.68 7.70 -51.93 -0.40 0.28 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.39 5.14 6.52 -40.82 -0.27 4.87 16 40 H 0.09 1.45 6.42 -52.49 -0.34 1.11 16 41 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.10 2.39 5.01 -52.49 -0.26 2.13 16 44 H 0.29 6.92 8.29 -40.82 -0.34 6.58 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -35.74 374.06 -9.51 -45.26 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.12 Total: 7.27 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.67 Total: -16.97 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.37 Total: -40.23 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.98 Total: -37.17 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.17 Total: 16.30 kcal Atomic # 16 Polarization: 20.50 SS G_CDS: -0.59 Total: 19.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.74 -9.51 -45.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.295 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds