Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81401 * 109.46948 * 2 1 4 4 O 1.42097 * 110.54323 * 68.37720 * 3 2 1 5 5 O 1.42102 * 110.54268 * 291.61975 * 3 2 1 6 6 N 1.65606 * 104.44862 * 179.97438 * 3 2 1 7 7 C 1.46496 * 119.99793 * 64.99981 * 6 3 2 8 8 C 1.53004 * 109.47101 * 165.00088 * 7 6 3 9 9 C 1.53001 * 109.47132 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46923 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99983 * 179.97438 * 10 9 8 12 12 O 1.21607 * 119.99826 * 0.02562 * 11 10 9 13 13 C 1.47437 * 120.00283 * 180.02562 * 11 10 9 14 14 C 1.39227 * 120.27694 * 355.71167 * 13 11 10 15 15 C 1.38223 * 120.09019 * 180.27968 * 14 13 11 16 16 C 1.38827 * 120.67436 * 359.69359 * 15 14 13 17 17 C 1.37596 * 120.57166 * 0.02562 * 16 15 14 18 18 C 1.40714 * 119.88143 * 0.02562 * 17 16 15 19 19 C 1.40885 * 120.33020 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00278 * 216.32858 * 19 18 17 21 21 C 1.40279 * 119.99934 * 36.32229 * 19 18 17 22 22 N 1.30628 * 120.00021 * 190.51200 * 21 19 18 23 23 Si 1.86805 * 119.99864 * 10.51087 * 21 19 18 24 24 H 1.48495 * 109.47237 * 267.22291 * 23 21 19 25 25 H 1.48498 * 109.47138 * 27.22377 * 23 21 19 26 26 H 1.48504 * 109.46514 * 147.22203 * 23 21 19 27 27 H 1.09005 * 109.46805 * 60.00138 * 1 2 3 28 28 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47365 * 300.00131 * 1 2 3 30 30 H 1.09000 * 109.47052 * 239.99839 * 2 1 3 31 31 H 1.08992 * 109.46876 * 120.00082 * 2 1 3 32 32 H 0.96993 * 119.99682 * 245.00151 * 6 3 2 33 33 H 1.09001 * 109.47408 * 45.00331 * 7 6 3 34 34 H 1.09001 * 109.47290 * 285.00010 * 7 6 3 35 35 H 1.09001 * 109.46791 * 59.99865 * 8 7 6 36 36 H 1.09001 * 109.46985 * 300.00109 * 8 7 6 37 37 H 1.09001 * 109.47351 * 60.00259 * 9 8 7 38 38 H 1.09001 * 109.47316 * 299.99957 * 9 8 7 39 39 H 0.97001 * 120.00283 * 0.02562 * 10 9 8 40 40 H 1.08002 * 119.96175 * 359.97438 * 14 13 11 41 41 H 1.08002 * 119.66391 * 179.71666 * 15 14 13 42 42 H 1.08000 * 119.71712 * 180.02562 * 16 15 14 43 43 H 1.07999 * 120.06224 * 180.02562 * 17 16 15 44 44 H 0.96995 * 120.00424 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.4675 0.9669 -1.1488 8 6 5.9627 1.2834 -1.0749 9 6 6.6763 0.6579 -2.2750 10 7 8.1078 0.9615 -2.2046 11 6 8.9405 0.5091 -3.1628 12 8 8.5036 -0.1507 -4.0862 13 6 10.3812 0.8141 -3.0917 14 6 10.8746 1.6425 -2.0873 15 6 12.2252 1.9305 -2.0277 16 6 13.1051 1.3961 -2.9590 17 6 12.6482 0.5695 -3.9597 18 6 11.2777 0.2614 -4.0433 19 6 10.7995 -0.5834 -5.0643 20 1 9.8366 -0.3939 -5.5153 21 6 11.5740 -1.6707 -5.4953 22 7 11.2341 -2.3291 -6.5710 23 14 13.0916 -2.1769 -4.5308 24 1 14.2858 -1.4978 -5.0946 25 1 12.9264 -1.7870 -3.1075 26 1 13.2689 -3.6484 -4.6236 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.2982 1.8766 0.7622 33 1 4.0546 1.3766 -2.0706 34 1 4.3237 -0.1134 -1.1349 35 1 6.3756 0.8737 -0.1530 36 1 6.1065 2.3638 -1.0888 37 1 6.2634 1.0672 -3.1971 38 1 6.5325 -0.4225 -2.2607 39 1 8.4564 1.4875 -1.4679 40 1 10.2005 2.0646 -1.3567 41 1 12.5998 2.5776 -1.2484 42 1 14.1575 1.6310 -2.8977 43 1 13.3400 0.1580 -4.6796 44 1 11.7694 -3.0812 -6.8689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601024292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = -126.163388 kcal Electronic energy + Delta-G solvation = -26342.015891 eV Core-core repulsion = 22384.669459 eV Total energy + Delta-G solvation = -3957.346432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.79087 -38.84386 -38.21978 -37.44848 -37.02781 -35.75645 -35.21789 -34.01757 -32.50253 -32.25733 -30.92385 -27.37216 -26.05331 -24.95074 -23.93731 -23.03016 -22.49659 -21.10190 -20.28028 -19.44370 -18.74182 -18.19354 -17.62809 -17.29427 -17.12650 -16.74423 -16.67689 -15.94262 -15.79648 -15.64722 -15.46148 -15.25540 -15.04302 -14.48677 -14.23456 -14.08472 -13.99752 -13.81151 -13.67663 -13.38832 -13.24246 -13.21330 -13.11261 -12.70231 -12.60321 -12.53323 -12.41909 -12.38490 -12.16474 -12.13197 -11.98740 -11.60007 -11.54119 -11.07381 -10.39153 -10.29364 -9.95377 -9.49362 -9.39438 -8.80900 -6.46935 -0.72176 0.36394 0.85408 1.24717 1.37872 1.47095 1.73621 2.10869 2.28704 2.48584 2.73277 2.82018 3.24307 3.55687 3.69262 3.88235 3.91332 4.02210 4.05702 4.26285 4.29972 4.37619 4.46327 4.58373 4.58925 4.64714 4.72522 4.73404 4.82528 4.86716 4.94005 5.03969 5.11076 5.16714 5.25671 5.31494 5.49131 5.66309 5.71074 5.89233 5.98505 6.10827 6.29208 6.49642 6.69815 6.81184 6.95151 7.68026 8.23258 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020244 B = 0.002052 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.796622 B =13644.165422 C =14567.232660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.612 4.612 3 S 2.617 3.383 4 O -0.995 6.995 5 O -1.000 7.000 6 N -1.113 6.113 7 C 0.111 3.889 8 C -0.124 4.124 9 C 0.120 3.880 10 N -0.726 5.726 11 C 0.552 3.448 12 O -0.578 6.578 13 C -0.267 4.267 14 C -0.039 4.039 15 C -0.231 4.231 16 C -0.063 4.063 17 C -0.248 4.248 18 C 0.098 3.902 19 C -0.450 4.450 20 H 0.073 0.927 21 C 0.035 3.965 22 N -0.850 5.850 23 Si 0.968 3.032 24 H -0.250 1.250 25 H -0.248 1.248 26 H -0.281 1.281 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.151 0.849 31 H 0.158 0.842 32 H 0.426 0.574 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.409 0.591 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.100 0.900 44 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.905 3.988 18.296 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.745 4.745 3 S 2.713 3.287 4 O -0.986 6.986 5 O -0.990 6.990 6 N -0.874 5.874 7 C -0.016 4.016 8 C -0.163 4.163 9 C -0.004 4.004 10 N -0.381 5.381 11 C 0.345 3.655 12 O -0.460 6.460 13 C -0.271 4.271 14 C -0.057 4.057 15 C -0.250 4.250 16 C -0.081 4.081 17 C -0.267 4.267 18 C 0.094 3.906 19 C -0.479 4.479 20 H 0.091 0.909 21 C -0.179 4.179 22 N -0.476 5.476 23 Si 0.790 3.210 24 H -0.175 1.175 25 H -0.172 1.172 26 H -0.207 1.207 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.169 0.831 31 H 0.176 0.824 32 H 0.262 0.738 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.247 0.753 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.153 0.847 43 H 0.118 0.882 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.845 4.099 17.258 22.501 hybrid contribution 0.876 -0.832 -0.018 1.208 sum -12.969 3.267 17.240 21.819 Atomic orbital electron populations 1.21691 0.90456 1.06358 1.03620 1.30325 1.07290 1.22824 1.14061 1.04584 0.73104 0.78381 0.72592 1.93557 1.83731 1.75071 1.46196 1.93564 1.83994 1.74339 1.47083 1.55283 1.25471 1.78438 1.28232 1.21319 0.92810 0.99267 0.88214 1.21834 0.93740 1.02561 0.98126 1.21217 0.80001 1.00267 0.98942 1.45702 1.07747 1.57082 1.27561 1.18514 0.87028 0.78520 0.81453 1.90734 1.78467 1.41087 1.35664 1.19839 0.92599 1.12605 1.02094 1.21250 0.96284 0.93489 0.94684 1.20956 0.92986 1.07780 1.03282 1.21252 1.00069 0.93959 0.92852 1.21247 0.95160 1.06811 1.03453 1.17840 0.92093 0.90835 0.89834 1.19948 1.04482 1.09221 1.14229 0.90936 1.27121 1.00733 0.95670 0.94371 1.69626 1.39317 1.17950 1.20747 0.85476 0.77768 0.76790 0.80948 1.17483 1.17183 1.20727 0.91150 0.88132 0.90757 0.83052 0.82372 0.73823 0.90703 0.88856 0.88251 0.89714 0.93182 0.92290 0.75321 0.83900 0.83799 0.84732 0.88207 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.92 71.98 0.71 -0.58 16 2 C -0.61 -4.29 6.79 71.98 0.49 -3.80 16 3 S 2.62 38.45 5.46 -56.49 -0.31 38.15 16 4 O -1.00 -21.11 18.08 -127.65 -2.31 -23.42 16 5 O -1.00 -23.45 17.50 -127.65 -2.23 -25.69 16 6 N -1.11 -12.39 5.89 -187.49 -1.10 -13.50 16 7 C 0.11 1.36 6.13 86.38 0.53 1.89 16 8 C -0.12 -1.73 5.47 30.60 0.17 -1.56 16 9 C 0.12 2.97 5.67 86.38 0.49 3.46 16 10 N -0.73 -21.90 5.51 -466.35 -2.57 -24.47 16 11 C 0.55 24.53 7.72 86.67 0.67 25.20 16 12 O -0.58 -31.91 13.54 -4.05 -0.05 -31.96 16 13 C -0.27 -11.98 5.92 -19.70 -0.12 -12.10 16 14 C -0.04 -1.31 9.52 22.50 0.21 -1.10 16 15 C -0.23 -7.44 10.03 22.41 0.22 -7.21 16 16 C -0.06 -2.29 10.01 22.26 0.22 -2.07 16 17 C -0.25 -11.24 7.00 22.72 0.16 -11.08 16 18 C 0.10 5.07 5.03 -21.11 -0.11 4.97 16 19 C -0.45 -26.84 8.31 23.41 0.19 -26.64 16 20 H 0.07 4.95 5.96 -2.91 -0.02 4.93 16 21 C 0.03 1.96 5.47 85.37 0.47 2.43 16 22 N -0.85 -49.37 13.92 21.88 0.30 -49.07 16 23 Si 0.97 43.37 24.52 68.60 1.68 45.06 16 24 H -0.25 -10.28 6.76 99.48 0.67 -9.61 16 25 H -0.25 -11.12 6.73 99.48 0.67 -10.45 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.15 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.43 3.46 8.62 -96.75 -0.83 2.63 16 33 H 0.07 1.12 7.70 -2.39 -0.02 1.10 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.41 9.18 6.52 -92.71 -0.60 8.57 16 40 H 0.14 3.44 6.42 -2.91 -0.02 3.42 16 41 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 43 H 0.10 4.54 5.01 -2.91 -0.01 4.53 16 44 H 0.29 15.17 8.29 -92.71 -0.77 14.40 16 Total: -1.00 -86.55 374.06 -2.74 -89.29 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.47 Total: 23.81 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 4.32 Total: -28.19 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -3.37 Total: -87.03 kcal Atomic # 8 Polarization: -76.47 SS G_CDS: -4.60 Total: -81.07 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.68 Total: 45.06 kcal Atomic # 16 Polarization: 38.45 SS G_CDS: -0.31 Total: 38.15 kcal Total: -86.55 -2.74 -89.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.876 kcal (2) G-P(sol) polarization free energy of solvation -86.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds