Wall clock time and date at job start Sat Apr 11 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99890 * 2 1 4 4 C 1.46903 * 110.99920 * 123.94827 * 2 1 3 5 5 H 1.08994 * 110.91809 * 303.90379 * 4 2 1 6 6 C 1.54909 * 111.00235 * 67.80550 * 4 2 1 7 7 N 1.47426 * 104.83319 * 155.08016 * 6 4 2 8 8 S 1.65599 * 125.64734 * 155.88982 * 7 6 4 9 9 O 1.42107 * 106.40325 * 30.15574 * 8 7 6 10 10 O 1.42104 * 106.40078 * 163.07167 * 8 7 6 11 11 C 1.76198 * 107.21993 * 276.61290 * 8 7 6 12 12 C 1.37648 * 120.12582 * 115.28751 * 11 8 7 13 13 C 1.38610 * 120.24468 * 179.97438 * 12 11 8 14 14 C 1.38652 * 120.50490 * 0.02562 * 13 12 11 15 15 C 1.37601 * 120.24776 * 0.02562 * 14 13 12 16 16 C 1.40689 * 120.12766 * 295.01186 * 11 8 7 17 17 C 1.41399 * 120.24658 * 359.97438 * 16 11 8 18 18 H 1.08003 * 119.99325 * 330.66341 * 17 16 11 19 19 C 1.39941 * 120.00193 * 150.66531 * 17 16 11 20 20 N 1.30824 * 120.00332 * 165.28650 * 19 17 16 21 21 Si 1.86800 * 120.00145 * 345.28830 * 19 17 16 22 22 H 1.48506 * 109.47131 * 95.24681 * 21 19 17 23 23 H 1.48497 * 109.47403 * 215.24601 * 21 19 17 24 24 H 1.48497 * 109.47241 * 335.24981 * 21 19 17 25 25 C 1.47023 * 108.70291 * 335.87283 * 7 6 4 26 26 C 1.54324 * 107.26957 * 1.06029 * 25 7 6 27 27 H 1.09001 * 110.71603 * 263.82744 * 26 25 7 28 28 O 1.42898 * 110.72159 * 140.55459 * 26 25 7 29 29 H 1.09001 * 109.47090 * 296.04930 * 1 2 3 30 30 H 1.09000 * 109.47290 * 56.04673 * 1 2 3 31 31 H 1.09002 * 109.46918 * 176.04852 * 1 2 3 32 32 H 1.08997 * 109.47350 * 183.95247 * 3 2 1 33 33 H 1.09002 * 109.47371 * 303.94919 * 3 2 1 34 34 H 1.09000 * 109.47451 * 63.95240 * 3 2 1 35 35 H 1.09003 * 110.36896 * 273.92554 * 6 4 2 36 36 H 1.09011 * 110.36587 * 36.13357 * 6 4 2 37 37 H 1.08003 * 119.87412 * 0.02562 * 12 11 8 38 38 H 1.08002 * 119.74508 * 179.97438 * 13 12 11 39 39 H 1.07997 * 119.87971 * 179.97438 * 14 13 12 40 40 H 1.07997 * 120.12909 * 179.97438 * 15 14 13 41 41 H 0.96997 * 120.00429 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.87967 * 241.63830 * 25 7 6 43 43 H 1.09003 * 109.87618 * 120.47375 * 25 7 6 44 44 H 0.96706 * 113.99759 * 61.44745 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.6047 -0.3815 2.0798 6 6 1.6844 -2.2754 0.9823 7 7 2.7234 -2.9584 1.7744 8 16 2.5950 -4.4718 2.4342 9 8 1.7344 -5.2110 1.5784 10 8 3.9172 -4.8847 2.7515 11 6 1.7452 -4.3018 3.9682 12 6 0.5066 -4.8774 4.1394 13 6 -0.1639 -4.7456 5.3453 14 6 0.4027 -4.0337 6.3915 15 6 1.6394 -3.4490 6.2425 16 6 2.3324 -3.5820 5.0248 17 6 3.6070 -2.9918 4.8627 18 1 4.3258 -3.4354 4.1896 19 6 3.9372 -1.8330 5.5744 20 7 5.1850 -1.4483 5.6556 21 14 2.5963 -0.8353 6.4087 22 1 2.4870 -1.2454 7.8318 23 1 2.9347 0.6087 6.3343 24 1 1.3011 -1.0761 5.7233 25 6 3.8926 -2.0734 1.8813 26 6 3.5470 -0.7660 1.1378 27 1 3.9327 -0.7884 0.1186 28 8 4.0525 0.3674 1.8463 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0253 -0.0708 32 1 3.0827 1.3433 -0.0708 33 1 1.5898 1.9163 -0.8525 34 1 1.7043 1.8724 0.9233 35 1 0.6947 -2.5017 1.3792 36 1 1.7487 -2.5702 -0.0652 37 1 0.0560 -5.4345 3.3313 38 1 -1.1356 -5.2002 5.4707 39 1 -0.1288 -3.9370 7.3267 40 1 2.0788 -2.8946 7.0585 41 1 5.4139 -0.6453 6.1492 42 1 4.7585 -2.5458 1.4177 43 1 4.1011 -1.8597 2.9296 44 1 5.0148 0.3742 1.9420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601415796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:39 Heat of formation + Delta-G solvation = -83.788378 kcal Electronic energy + Delta-G solvation = -29852.295280 eV Core-core repulsion = 25896.786367 eV Total energy + Delta-G solvation = -3955.508913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.28918 -37.92492 -36.43024 -36.00377 -35.24904 -34.97627 -33.92454 -30.79243 -30.16030 -29.08045 -28.35857 -27.20290 -25.45302 -23.62473 -22.16022 -21.76654 -21.24325 -20.11695 -18.33527 -17.80302 -17.35242 -17.17895 -16.40536 -15.97576 -15.49344 -15.09986 -14.74854 -14.59273 -14.33220 -13.97891 -13.90034 -13.57907 -13.51439 -12.99516 -12.89251 -12.73951 -12.39970 -12.29755 -12.19246 -11.95899 -11.80725 -11.66543 -11.44702 -11.37924 -11.28719 -11.26541 -11.02510 -10.91196 -10.72438 -10.46377 -10.35384 -10.00793 -9.79876 -9.53966 -9.30304 -8.46875 -8.36029 -8.25014 -7.88859 -7.25956 -4.93764 1.31775 2.03854 2.48280 2.90640 3.02692 3.10578 3.63979 3.72639 3.93255 4.19063 4.39449 4.55129 4.66590 4.93677 5.08401 5.22436 5.30864 5.40377 5.44142 5.50980 5.57245 5.61460 5.76479 5.78927 5.82654 5.85927 5.88827 6.04475 6.08975 6.14929 6.15608 6.31711 6.45281 6.56317 6.64206 6.86195 6.91561 7.00704 7.04586 7.08224 7.23072 7.38313 7.51162 7.78151 7.81025 8.06798 8.25819 8.46574 9.70803 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010145 B = 0.006553 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.420002 B = 4271.656512 C = 5158.145708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.537 5.537 3 C 0.029 3.971 4 C 0.077 3.923 5 H 0.070 0.930 6 C 0.138 3.862 7 N -1.001 6.001 8 S 2.721 3.279 9 O -0.989 6.989 10 O -0.962 6.962 11 C -0.773 4.773 12 C 0.017 3.983 13 C -0.259 4.259 14 C -0.044 4.044 15 C -0.234 4.234 16 C 0.166 3.834 17 C -0.456 4.456 18 H 0.130 0.870 19 C 0.092 3.908 20 N -0.774 5.774 21 Si 0.908 3.092 22 H -0.269 1.269 23 H -0.285 1.285 24 H -0.241 1.241 25 C 0.082 3.918 26 C 0.103 3.897 27 H 0.077 0.923 28 O -0.557 6.557 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.292 0.708 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 6.456 -7.081 10.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.262 5.262 3 C -0.119 4.119 4 C -0.033 4.033 5 H 0.088 0.912 6 C 0.011 3.989 7 N -0.837 5.837 8 S 2.819 3.181 9 O -0.980 6.980 10 O -0.952 6.952 11 C -0.867 4.867 12 C -0.003 4.003 13 C -0.279 4.279 14 C -0.062 4.062 15 C -0.254 4.254 16 C 0.160 3.840 17 C -0.482 4.482 18 H 0.147 0.853 19 C -0.132 4.132 20 N -0.395 5.395 21 Si 0.734 3.266 22 H -0.195 1.195 23 H -0.213 1.213 24 H -0.164 1.164 25 C -0.044 4.044 26 C 0.043 3.957 27 H 0.095 0.905 28 O -0.363 6.363 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.130 0.870 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.206 5.696 -7.824 10.552 hybrid contribution -0.572 1.133 2.026 2.391 sum -4.778 6.829 -5.798 10.152 Atomic orbital electron populations 1.22435 0.87243 1.02589 1.00501 1.62020 1.07931 1.14249 1.41988 1.22354 1.01490 0.88095 0.99941 1.22860 0.93689 0.93851 0.92906 0.91238 1.21756 0.91214 0.89688 0.96213 1.58403 1.23098 1.34994 1.67255 1.00626 0.73402 0.70655 0.73412 1.93458 1.68944 1.68747 1.66817 1.93509 1.37402 1.79318 1.85006 1.29932 1.10731 1.26313 1.19743 1.20399 0.91487 0.92082 0.96326 1.20494 1.01374 1.10533 0.95498 1.20825 0.94230 0.94246 0.96932 1.21170 0.97904 1.08349 0.97961 1.17068 0.90904 0.86824 0.89155 1.20380 0.97901 1.07500 1.22456 0.85270 1.26191 0.96354 0.97581 0.93047 1.69647 1.18548 1.21435 1.29893 0.86366 0.82814 0.77384 0.79990 1.19519 1.21265 1.16404 1.22737 0.87636 0.89583 1.04408 1.22786 0.93310 0.85130 0.94490 0.90530 1.86507 1.27108 1.43813 1.78841 0.95468 0.91354 0.90970 0.90554 0.92014 0.95454 0.90808 0.90382 0.86846 0.88071 0.88279 0.87801 0.89689 0.91572 0.87050 0.77088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.43 60.06 0.57 0.80 16 2 N -0.54 -6.92 4.92 -240.58 -1.18 -8.11 16 3 C 0.03 0.34 8.92 60.06 0.54 0.88 16 4 C 0.08 1.16 2.46 -65.56 -0.16 1.00 16 5 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 6 C 0.14 2.20 5.78 -2.53 -0.01 2.19 16 7 N -1.00 -18.80 3.63 -111.42 -0.40 -19.20 16 8 S 2.72 59.48 5.27 -107.50 -0.57 58.91 16 9 O -0.99 -22.05 16.65 -57.17 -0.95 -23.00 16 10 O -0.96 -23.55 15.19 -57.17 -0.87 -24.42 16 11 C -0.77 -17.84 5.96 -38.87 -0.23 -18.08 16 12 C 0.02 0.36 9.54 -39.66 -0.38 -0.01 16 13 C -0.26 -5.25 10.05 -39.29 -0.39 -5.64 16 14 C -0.04 -0.91 10.02 -39.66 -0.40 -1.30 16 15 C -0.23 -5.42 7.00 -38.87 -0.27 -5.69 16 16 C 0.17 4.03 5.16 -106.82 -0.55 3.48 16 17 C -0.46 -11.32 6.61 -37.74 -0.25 -11.57 16 18 H 0.13 3.41 4.91 -52.48 -0.26 3.16 16 19 C 0.09 2.18 5.09 -17.34 -0.09 2.09 16 20 N -0.77 -18.16 13.93 55.55 0.77 -17.39 16 21 Si 0.91 19.28 24.40 -169.99 -4.15 15.13 16 22 H -0.27 -5.57 6.74 56.52 0.38 -5.19 16 23 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.24 -5.29 6.61 56.52 0.37 -4.92 16 25 C 0.08 1.45 6.16 -3.06 -0.02 1.44 16 26 C 0.10 1.52 2.96 -24.90 -0.07 1.45 16 27 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 28 O -0.56 -7.98 12.06 -35.23 -0.42 -8.40 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 31 H 0.07 0.78 7.35 -51.93 -0.38 0.40 16 32 H 0.08 0.90 6.38 -51.93 -0.33 0.57 16 33 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 1.14 8.03 -51.93 -0.42 0.72 16 36 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 37 H 0.11 2.22 7.33 -52.48 -0.38 1.83 16 38 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.10 2.34 4.37 -52.49 -0.23 2.11 16 41 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.11 2.26 4.98 -51.93 -0.26 2.00 16 44 H 0.38 4.16 9.11 45.56 0.42 4.58 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -29.45 353.55 -9.43 -38.88 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.25 Total: 11.25 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: -1.73 Total: -28.98 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -0.81 Total: -44.70 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -2.25 Total: -55.82 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.15 Total: 15.13 kcal Atomic # 16 Polarization: 59.48 SS G_CDS: -0.57 Total: 58.91 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.45 -9.43 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.908 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds