Wall clock time and date at job start Sat Apr 11 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 110.99985 * 2 1 4 4 C 1.53241 * 109.34043 * 187.25325 * 3 2 1 5 5 N 1.47079 * 108.51909 * 306.16355 * 4 3 2 6 6 S 1.65600 * 120.88669 * 231.16190 * 5 4 3 7 7 O 1.42103 * 106.39681 * 14.56637 * 6 5 4 8 8 O 1.42090 * 106.40290 * 147.48012 * 6 5 4 9 9 C 1.76195 * 107.22207 * 261.02667 * 6 5 4 10 10 C 1.38655 * 119.87388 * 262.68294 * 9 6 5 11 11 C 1.38616 * 120.50357 * 179.72155 * 10 9 6 12 12 C 1.37642 * 120.24342 * 0.54491 * 11 10 9 13 13 C 1.40703 * 119.74425 * 359.73308 * 12 11 10 14 14 C 1.41394 * 120.23923 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99936 * 211.46304 * 14 13 12 16 16 C 1.39950 * 120.00388 * 31.47459 * 14 13 12 17 17 N 1.30824 * 119.99790 * 7.74222 * 16 14 13 18 18 Si 1.86799 * 120.00143 * 187.75200 * 16 14 13 19 19 H 1.48505 * 109.47220 * 59.99150 * 18 16 14 20 20 H 1.48500 * 109.47253 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47012 * 299.99674 * 18 16 14 22 22 C 1.37599 * 119.88061 * 82.94924 * 9 6 5 23 23 C 1.47086 * 118.23646 * 51.18782 * 5 4 3 24 24 H 1.09003 * 109.78760 * 68.61529 * 23 5 4 25 25 C 1.52998 * 109.62870 * 189.09897 * 23 5 4 26 26 O 1.42902 * 109.46895 * 72.47934 * 25 23 5 27 27 C 1.46904 * 110.99849 * 124.29799 * 2 1 3 28 28 H 1.09004 * 109.46967 * 63.96070 * 1 2 3 29 29 H 1.09004 * 109.47018 * 183.95172 * 1 2 3 30 30 H 1.08997 * 109.47629 * 303.95344 * 1 2 3 31 31 H 1.08999 * 109.49580 * 67.28710 * 3 2 1 32 32 H 1.09003 * 109.51101 * 307.22443 * 3 2 1 33 33 H 1.08999 * 109.63350 * 65.87532 * 4 3 2 34 34 H 1.09000 * 109.62754 * 186.46287 * 4 3 2 35 35 H 1.08002 * 119.75096 * 359.97284 * 10 9 6 36 36 H 1.07992 * 119.88171 * 180.27989 * 11 10 9 37 37 H 1.07997 * 120.12584 * 179.70649 * 12 11 10 38 38 H 0.97003 * 119.99652 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.11871 * 359.97438 * 22 9 6 40 40 H 1.09001 * 109.47092 * 192.46972 * 25 23 5 41 41 H 1.08993 * 109.47375 * 312.48026 * 25 23 5 42 42 H 0.96693 * 114.00471 * 184.14493 * 26 25 23 43 43 H 1.08995 * 109.49409 * 292.70635 * 27 2 1 44 44 H 1.08997 * 109.49395 * 52.76029 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5163 1.3312 -0.1826 5 7 4.0868 0.4462 0.8443 6 16 5.3388 0.9525 1.8028 7 8 5.4179 2.3628 1.6475 8 8 5.1622 0.3181 3.0618 9 6 6.8212 0.2924 1.1164 10 6 7.3616 -0.8751 1.6335 11 6 8.5241 -1.4090 1.0998 12 6 9.1614 -0.7777 0.0558 13 6 8.6253 0.4108 -0.4731 14 6 9.2716 1.0683 -1.5451 15 1 9.2172 2.1435 -1.6307 16 6 9.9818 0.3258 -2.4953 17 7 9.9235 -0.9810 -2.4811 18 14 11.0131 1.2008 -3.7838 19 1 12.0569 2.0162 -3.1124 20 1 11.6609 0.1963 -4.6651 21 1 10.1417 2.0855 -4.5981 22 6 7.4414 0.9404 0.0730 23 6 3.5163 -0.9009 0.9970 24 1 3.7560 -1.5046 0.1216 25 6 4.0906 -1.5632 2.2509 26 8 3.5281 -0.9508 3.4131 27 6 1.9954 -0.7728 1.1330 28 1 -0.3633 0.4511 -0.9234 29 1 -0.3633 -1.0253 0.0708 30 1 -0.3634 0.5739 0.8524 31 1 1.7554 1.8532 0.9478 32 1 1.5456 1.9340 -0.8181 33 1 3.7562 0.9450 -1.1732 34 1 3.9254 2.3351 -0.0689 35 1 6.8707 -1.3747 2.4557 36 1 8.9337 -2.3214 1.5073 37 1 10.0697 -1.1928 -0.3554 38 1 10.4160 -1.4957 -3.1395 39 1 7.0209 1.8519 -0.3256 40 1 3.8457 -2.6253 2.2454 41 1 5.1735 -1.4400 2.2634 42 1 3.8943 -1.2777 4.2462 43 1 1.7554 -0.2612 2.0650 44 1 1.5452 -1.7655 1.1367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601468626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:50 Heat of formation + Delta-G solvation = -70.048736 kcal Electronic energy + Delta-G solvation = -29143.551324 eV Core-core repulsion = 25188.638206 eV Total energy + Delta-G solvation = -3954.913118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.23490 -37.69425 -37.23841 -35.83574 -35.12336 -34.31692 -33.79941 -31.49907 -30.08683 -29.82519 -28.06076 -26.34596 -25.45199 -23.88798 -22.09502 -21.82572 -21.04270 -20.58378 -18.53760 -17.69726 -17.33817 -16.82320 -16.23619 -15.82815 -15.23819 -15.02627 -14.92685 -14.80811 -14.74594 -14.40439 -13.88891 -13.78513 -13.41684 -13.32700 -13.20038 -12.56235 -12.31672 -12.14172 -11.97389 -11.84580 -11.63276 -11.56556 -11.41934 -11.31138 -11.23033 -11.14441 -10.99495 -10.91472 -10.74745 -10.61273 -10.23695 -9.84319 -9.67660 -9.40087 -9.24639 -8.85404 -8.29935 -8.02938 -7.64211 -6.84964 -4.56596 1.02969 2.18645 2.62102 3.00752 3.03943 3.06345 3.44030 3.85288 3.86682 4.32336 4.42269 4.58752 4.80453 4.82851 4.91946 5.15684 5.20108 5.35520 5.36633 5.41528 5.42282 5.56583 5.59512 5.64588 5.72741 5.74035 5.79493 6.02092 6.05440 6.17405 6.22396 6.27383 6.60256 6.69933 6.75844 6.94674 6.98360 6.99423 7.07049 7.21198 7.34074 7.68594 7.81943 7.93465 8.07167 8.40048 8.67860 8.72145 10.10496 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.003869 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.411559 B = 7235.281886 C = 7956.465111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.544 5.544 3 C 0.046 3.954 4 C 0.121 3.879 5 N -0.994 5.994 6 S 2.685 3.315 7 O -0.976 6.976 8 O -0.950 6.950 9 C -0.640 4.640 10 C -0.147 4.147 11 C -0.124 4.124 12 C -0.108 4.108 13 C 0.092 3.908 14 C -0.464 4.464 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.807 5.807 18 Si 0.915 3.085 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.115 4.115 23 C 0.166 3.834 24 H 0.092 0.908 25 C 0.048 3.952 26 O -0.541 6.541 27 C 0.054 3.946 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.282 0.718 39 H 0.109 0.891 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.377 0.623 43 H 0.055 0.945 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 -2.215 3.595 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.269 5.269 3 C -0.084 4.084 4 C -0.004 4.004 5 N -0.832 5.832 6 S 2.782 3.218 7 O -0.967 6.967 8 O -0.940 6.940 9 C -0.731 4.731 10 C -0.168 4.168 11 C -0.143 4.143 12 C -0.128 4.128 13 C 0.089 3.911 14 C -0.495 4.495 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.433 5.433 18 Si 0.740 3.260 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.137 4.137 23 C 0.060 3.940 24 H 0.110 0.890 25 C -0.031 4.031 26 O -0.346 6.346 27 C -0.075 4.075 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.224 0.776 43 H 0.073 0.927 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.979 -1.777 3.321 13.515 hybrid contribution 1.009 -0.152 -0.187 1.038 sum -11.970 -1.929 3.134 12.523 Atomic orbital electron populations 1.22339 0.87332 1.01764 1.00682 1.61884 1.07471 1.13802 1.43732 1.22445 0.95599 0.89338 1.01003 1.21532 0.92283 0.94703 0.91894 1.57815 1.50053 1.22645 1.52669 1.01976 0.73002 0.73092 0.73767 1.93485 1.86971 1.29567 1.86628 1.93571 1.85097 1.76021 1.39359 1.30002 1.21572 1.09164 1.12363 1.20138 0.99272 0.95937 1.01428 1.20842 0.96441 0.99123 0.97924 1.21684 0.99686 0.97243 0.94203 1.17697 0.89915 0.92081 0.91390 1.19560 1.27785 0.95182 1.06931 0.90107 1.25887 0.95072 0.94810 0.98582 1.69721 1.34297 1.06367 1.32953 0.86240 0.80175 0.79764 0.79833 1.18822 1.20284 1.18882 1.20822 0.96300 0.99750 0.96801 1.21097 0.92901 0.82975 0.97056 0.89047 1.22669 0.99360 0.95290 0.85762 1.86377 1.65056 1.67811 1.15384 1.22349 0.94399 0.98490 0.92299 0.91375 0.91488 0.95775 0.94333 0.89705 0.90462 0.88239 0.87373 0.88347 0.85618 0.90680 0.87347 0.92899 0.91012 0.77552 0.92704 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.62 60.06 0.58 0.84 16 2 N -0.54 -6.64 4.88 -242.61 -1.18 -7.82 16 3 C 0.05 0.57 5.62 -3.70 -0.02 0.55 16 4 C 0.12 1.76 6.69 -3.60 -0.02 1.74 16 5 N -0.99 -16.11 3.33 -106.20 -0.35 -16.47 16 6 S 2.68 51.41 5.24 -107.50 -0.56 50.85 16 7 O -0.98 -21.05 15.89 -57.18 -0.91 -21.96 16 8 O -0.95 -18.03 11.08 -67.46 -0.75 -18.77 16 9 C -0.64 -13.88 5.91 -39.66 -0.23 -14.11 16 10 C -0.15 -3.09 8.72 -39.29 -0.34 -3.43 16 11 C -0.12 -2.72 10.02 -39.66 -0.40 -3.12 16 12 C -0.11 -2.67 8.64 -38.87 -0.34 -3.01 16 13 C 0.09 2.38 5.53 -106.83 -0.59 1.79 16 14 C -0.46 -11.91 9.06 -37.74 -0.34 -12.25 16 15 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 16 C 0.07 1.76 5.29 -17.34 -0.09 1.67 16 17 N -0.81 -19.99 10.87 55.55 0.60 -19.39 16 18 Si 0.92 18.19 29.57 -169.99 -5.03 13.16 16 19 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 22 C -0.12 -2.77 9.26 -38.88 -0.36 -3.13 16 23 C 0.17 2.38 3.51 -67.49 -0.24 2.14 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 25 C 0.05 0.67 5.86 37.16 0.22 0.89 16 26 O -0.54 -7.81 9.54 -60.51 -0.58 -8.39 16 27 C 0.05 0.69 4.73 -3.70 -0.02 0.67 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.57 8.00 -51.93 -0.42 0.15 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.47 6.77 -51.93 -0.35 1.11 16 35 H 0.11 1.99 5.85 -52.49 -0.31 1.68 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.13 3.16 6.32 -52.49 -0.33 2.83 16 38 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 39 H 0.11 2.49 7.77 -52.48 -0.41 2.09 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.12 2.93 -51.93 -0.15 0.97 16 42 H 0.38 4.40 9.00 45.56 0.41 4.81 16 43 H 0.05 0.78 7.17 -51.93 -0.37 0.40 16 44 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -30.17 353.19 -10.90 -41.08 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.27 Total: 11.16 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -2.20 Total: -28.77 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.93 Total: -43.68 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -2.23 Total: -49.13 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 16 Polarization: 51.41 SS G_CDS: -0.56 Total: 50.85 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.17 -10.90 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601468626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.969 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds