Wall clock time and date at job start Sat Apr 11 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 110.99985 * 2 1 4 4 C 1.53241 * 109.34043 * 187.25325 * 3 2 1 5 5 N 1.47079 * 108.51909 * 306.16355 * 4 3 2 6 6 S 1.65600 * 120.88669 * 231.16190 * 5 4 3 7 7 O 1.42103 * 106.39681 * 14.56637 * 6 5 4 8 8 O 1.42090 * 106.40290 * 147.48012 * 6 5 4 9 9 C 1.76195 * 107.22207 * 261.02667 * 6 5 4 10 10 C 1.38655 * 119.87388 * 262.68294 * 9 6 5 11 11 C 1.38616 * 120.50357 * 179.72155 * 10 9 6 12 12 C 1.37642 * 120.24342 * 0.54491 * 11 10 9 13 13 C 1.40703 * 119.74425 * 359.73308 * 12 11 10 14 14 C 1.41394 * 120.23923 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99936 * 211.46304 * 14 13 12 16 16 C 1.39950 * 120.00388 * 31.47459 * 14 13 12 17 17 N 1.30824 * 119.99790 * 7.74222 * 16 14 13 18 18 Si 1.86799 * 120.00143 * 187.75200 * 16 14 13 19 19 H 1.48505 * 109.47220 * 59.99150 * 18 16 14 20 20 H 1.48500 * 109.47253 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47012 * 299.99674 * 18 16 14 22 22 C 1.37599 * 119.88061 * 82.94924 * 9 6 5 23 23 C 1.47086 * 118.23646 * 51.18782 * 5 4 3 24 24 H 1.09003 * 109.78760 * 68.61529 * 23 5 4 25 25 C 1.52998 * 109.62870 * 189.09897 * 23 5 4 26 26 O 1.42902 * 109.46895 * 72.47934 * 25 23 5 27 27 C 1.46904 * 110.99849 * 124.29799 * 2 1 3 28 28 H 1.09004 * 109.46967 * 63.96070 * 1 2 3 29 29 H 1.09004 * 109.47018 * 183.95172 * 1 2 3 30 30 H 1.08997 * 109.47629 * 303.95344 * 1 2 3 31 31 H 1.08999 * 109.49580 * 67.28710 * 3 2 1 32 32 H 1.09003 * 109.51101 * 307.22443 * 3 2 1 33 33 H 1.08999 * 109.63350 * 65.87532 * 4 3 2 34 34 H 1.09000 * 109.62754 * 186.46287 * 4 3 2 35 35 H 1.08002 * 119.75096 * 359.97284 * 10 9 6 36 36 H 1.07992 * 119.88171 * 180.27989 * 11 10 9 37 37 H 1.07997 * 120.12584 * 179.70649 * 12 11 10 38 38 H 0.97003 * 119.99652 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.11871 * 359.97438 * 22 9 6 40 40 H 1.09001 * 109.47092 * 192.46972 * 25 23 5 41 41 H 1.08993 * 109.47375 * 312.48026 * 25 23 5 42 42 H 0.96693 * 114.00471 * 184.14493 * 26 25 23 43 43 H 1.08995 * 109.49409 * 292.70635 * 27 2 1 44 44 H 1.08997 * 109.49395 * 52.76029 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5163 1.3312 -0.1826 5 7 4.0868 0.4462 0.8443 6 16 5.3388 0.9525 1.8028 7 8 5.4179 2.3628 1.6475 8 8 5.1622 0.3181 3.0618 9 6 6.8212 0.2924 1.1164 10 6 7.3616 -0.8751 1.6335 11 6 8.5241 -1.4090 1.0998 12 6 9.1614 -0.7777 0.0558 13 6 8.6253 0.4108 -0.4731 14 6 9.2716 1.0683 -1.5451 15 1 9.2172 2.1435 -1.6307 16 6 9.9818 0.3258 -2.4953 17 7 9.9235 -0.9810 -2.4811 18 14 11.0131 1.2008 -3.7838 19 1 12.0569 2.0162 -3.1124 20 1 11.6609 0.1963 -4.6651 21 1 10.1417 2.0855 -4.5981 22 6 7.4414 0.9404 0.0730 23 6 3.5163 -0.9009 0.9970 24 1 3.7560 -1.5046 0.1216 25 6 4.0906 -1.5632 2.2509 26 8 3.5281 -0.9508 3.4131 27 6 1.9954 -0.7728 1.1330 28 1 -0.3633 0.4511 -0.9234 29 1 -0.3633 -1.0253 0.0708 30 1 -0.3634 0.5739 0.8524 31 1 1.7554 1.8532 0.9478 32 1 1.5456 1.9340 -0.8181 33 1 3.7562 0.9450 -1.1732 34 1 3.9254 2.3351 -0.0689 35 1 6.8707 -1.3747 2.4557 36 1 8.9337 -2.3214 1.5073 37 1 10.0697 -1.1928 -0.3554 38 1 10.4160 -1.4957 -3.1395 39 1 7.0209 1.8519 -0.3256 40 1 3.8457 -2.6253 2.2454 41 1 5.1735 -1.4400 2.2634 42 1 3.8943 -1.2777 4.2462 43 1 1.7554 -0.2612 2.0650 44 1 1.5452 -1.7655 1.1367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601468626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:49 Heat of formation + Delta-G solvation = -92.126840 kcal Electronic energy + Delta-G solvation = -29144.508703 eV Core-core repulsion = 25188.638206 eV Total energy + Delta-G solvation = -3955.870496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.30759 -39.47253 -38.64341 -37.15175 -36.60666 -35.62078 -35.42368 -32.58644 -31.90591 -31.60352 -29.06148 -27.54027 -27.11756 -24.90333 -23.61349 -23.14376 -22.82580 -21.72179 -20.16911 -19.23096 -18.54758 -18.07931 -17.76977 -17.35759 -16.80352 -16.52948 -16.15357 -15.98802 -15.80977 -15.71573 -15.26861 -15.12016 -14.89217 -14.86020 -14.27236 -14.24639 -13.78140 -13.34802 -13.27979 -13.16880 -13.06168 -12.95480 -12.83353 -12.82375 -12.67007 -12.61290 -12.46723 -12.26105 -12.22280 -11.85981 -11.57632 -11.43089 -11.37233 -11.16019 -10.42927 -10.12016 -9.81151 -9.48519 -9.25283 -8.65764 -6.48433 -0.48993 0.40872 0.83363 1.37634 1.46573 1.48730 2.04158 2.19063 2.61895 2.82307 2.95173 3.36614 3.47278 3.52038 3.72182 3.88765 4.15406 4.18744 4.27661 4.28109 4.35246 4.46938 4.50733 4.65233 4.66503 4.71374 4.73741 4.80089 4.86107 4.91409 4.95460 5.04559 5.05841 5.07031 5.20456 5.21381 5.40837 5.53335 5.66420 5.86701 5.95622 6.03528 6.10646 6.12136 6.52624 6.81386 6.84995 7.12740 8.31547 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.003869 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.411559 B = 7235.281886 C = 7956.465111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.553 5.553 3 C 0.050 3.950 4 C 0.113 3.887 5 N -0.991 5.991 6 S 2.705 3.295 7 O -1.003 7.003 8 O -0.946 6.946 9 C -0.647 4.647 10 C -0.139 4.139 11 C -0.126 4.126 12 C -0.130 4.130 13 C 0.063 3.937 14 C -0.504 4.504 15 H 0.075 0.925 16 C 0.036 3.964 17 N -0.834 5.834 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.261 1.261 22 C -0.138 4.138 23 C 0.156 3.844 24 H 0.096 0.904 25 C 0.046 3.954 26 O -0.554 6.554 27 C 0.061 3.939 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.024 0.976 31 H 0.031 0.969 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.289 0.711 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.388 0.612 43 H 0.040 0.960 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.373 -3.295 3.627 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.079 4.079 4 C -0.012 4.012 5 N -0.831 5.831 6 S 2.799 3.201 7 O -0.994 6.994 8 O -0.936 6.936 9 C -0.735 4.735 10 C -0.160 4.160 11 C -0.145 4.145 12 C -0.150 4.150 13 C 0.060 3.940 14 C -0.534 4.534 15 H 0.093 0.907 16 C -0.178 4.178 17 N -0.461 5.461 18 Si 0.805 3.195 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.185 1.185 22 C -0.159 4.159 23 C 0.050 3.950 24 H 0.114 0.886 25 C -0.033 4.033 26 O -0.361 6.361 27 C -0.069 4.069 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.237 0.763 43 H 0.059 0.941 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.554 -2.877 3.366 15.213 hybrid contribution 1.358 0.113 -0.090 1.365 sum -13.196 -2.764 3.277 13.875 Atomic orbital electron populations 1.22412 0.85446 1.02817 1.01377 1.61913 1.09166 1.13329 1.43376 1.22418 0.93854 0.90048 1.01606 1.21718 0.93987 0.94022 0.91522 1.57658 1.48686 1.23961 1.52763 1.01432 0.72569 0.72245 0.73856 1.93446 1.87351 1.31453 1.87126 1.93577 1.84862 1.75774 1.39375 1.30508 1.22816 1.08954 1.11205 1.20582 0.98562 0.95387 1.01428 1.21202 0.96442 0.99922 0.96922 1.21688 1.00004 0.97652 0.95614 1.18036 0.90834 0.93038 0.92119 1.19794 1.29997 0.95261 1.08343 0.90651 1.26674 0.95548 0.95429 1.00130 1.69769 1.34901 1.07506 1.33894 0.85212 0.78379 0.78743 0.77174 1.18597 1.18957 1.18533 1.20878 0.96518 1.00272 0.98252 1.21398 0.94165 0.81767 0.97636 0.88573 1.22719 0.98057 0.97082 0.85448 1.86351 1.65223 1.68409 1.16115 1.22293 0.93129 0.99614 0.91840 0.90144 0.90206 0.95689 0.95051 0.87320 0.90204 0.89111 0.84218 0.85220 0.86889 0.89989 0.87810 0.89590 0.92890 0.76276 0.94130 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.62 127.69 1.23 1.66 16 2 N -0.55 -12.10 4.88 -921.48 -4.50 -16.60 16 3 C 0.05 1.16 5.62 86.38 0.49 1.65 16 4 C 0.11 3.21 6.69 86.35 0.58 3.79 16 5 N -0.99 -31.26 3.33 -489.89 -1.63 -32.89 16 6 S 2.70 102.64 5.24 -56.49 -0.30 102.35 16 7 O -1.00 -43.87 15.89 -128.00 -2.03 -45.90 16 8 O -0.95 -34.59 11.08 -118.17 -1.31 -35.90 16 9 C -0.65 -28.18 5.91 22.22 0.13 -28.05 16 10 C -0.14 -5.71 8.72 22.46 0.20 -5.51 16 11 C -0.13 -5.46 10.02 22.22 0.22 -5.24 16 12 C -0.13 -6.57 8.64 22.73 0.20 -6.37 16 13 C 0.06 3.36 5.53 -21.29 -0.12 3.24 16 14 C -0.50 -27.01 9.06 23.46 0.21 -26.79 16 15 H 0.08 3.93 7.86 -2.91 -0.02 3.91 16 16 C 0.04 1.78 5.29 85.26 0.45 2.23 16 17 N -0.83 -42.22 10.87 21.83 0.24 -41.98 16 18 Si 0.98 37.72 29.57 68.60 2.03 39.75 16 19 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 20 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 22 C -0.14 -6.87 9.26 22.73 0.21 -6.66 16 23 C 0.16 4.14 3.51 44.96 0.16 4.30 16 24 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 25 C 0.05 1.16 5.86 71.98 0.42 1.59 16 26 O -0.55 -14.71 9.54 -124.81 -1.19 -15.90 16 27 C 0.06 1.39 4.73 86.38 0.41 1.79 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.08 8.00 -2.38 -0.02 1.06 16 30 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 1.97 8.11 -2.39 -0.02 1.95 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.09 2.72 6.77 -2.39 -0.02 2.70 16 35 H 0.14 4.80 5.85 -2.91 -0.02 4.78 16 36 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 37 H 0.11 5.90 6.32 -2.91 -0.02 5.89 16 38 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 39 H 0.10 5.07 7.77 -2.91 -0.02 5.04 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.53 2.93 -2.39 -0.01 1.52 16 42 H 0.39 8.14 9.00 -74.06 -0.67 7.48 16 43 H 0.04 1.06 7.17 -2.39 -0.02 1.04 16 44 H 0.10 1.87 8.01 -2.39 -0.02 1.85 16 Total: -1.00 -66.11 353.19 -3.55 -69.66 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: 0.37 Total: 35.80 kcal Atomic # 6 Polarization: -63.17 SS G_CDS: 4.78 Total: -58.39 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -5.89 Total: -91.47 kcal Atomic # 8 Polarization: -93.16 SS G_CDS: -4.53 Total: -97.70 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 16 Polarization: 102.64 SS G_CDS: -0.30 Total: 102.35 kcal Total: -66.11 -3.55 -69.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601468626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.469 kcal (2) G-P(sol) polarization free energy of solvation -66.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds