Wall clock time and date at job start Sat Apr 11 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99781 * 2 1 4 4 C 1.53699 * 109.25415 * 172.60992 * 3 2 1 5 5 N 1.47081 * 108.27580 * 54.08262 * 4 3 2 6 6 S 1.65608 * 120.88156 * 128.75495 * 5 4 3 7 7 O 1.42095 * 106.39867 * 344.50015 * 6 5 4 8 8 O 1.42098 * 106.39971 * 211.58026 * 6 5 4 9 9 C 1.76202 * 107.21830 * 98.03956 * 6 5 4 10 10 C 1.38660 * 119.87514 * 96.40098 * 9 6 5 11 11 C 1.38607 * 120.50124 * 179.97438 * 10 9 6 12 12 C 1.37637 * 120.24724 * 0.25813 * 11 10 9 13 13 C 1.40701 * 119.74548 * 359.47408 * 12 11 10 14 14 C 1.41394 * 120.24544 * 180.27463 * 13 12 11 15 15 H 1.07998 * 120.00207 * 208.17399 * 14 13 12 16 16 C 1.39952 * 120.00130 * 28.17185 * 14 13 12 17 17 N 1.30821 * 119.99850 * 12.04155 * 16 14 13 18 18 Si 1.86791 * 119.99974 * 192.04135 * 16 14 13 19 19 H 1.48502 * 109.47302 * 90.00187 * 18 16 14 20 20 H 1.48502 * 109.47079 * 210.00228 * 18 16 14 21 21 H 1.48508 * 109.47429 * 329.99992 * 18 16 14 22 22 C 1.37590 * 119.87541 * 276.37756 * 9 6 5 23 23 C 1.47075 * 118.23991 * 308.48362 * 5 4 3 24 24 H 1.09005 * 109.63060 * 291.74883 * 23 5 4 25 25 C 1.53000 * 109.63328 * 171.36483 * 23 5 4 26 26 O 1.42900 * 109.46940 * 287.16846 * 25 23 5 27 27 C 1.46902 * 110.99932 * 235.70149 * 2 1 3 28 28 H 1.08994 * 109.46911 * 184.30520 * 1 2 3 29 29 H 1.09003 * 109.46342 * 304.29888 * 1 2 3 30 30 H 1.08996 * 109.47118 * 64.29554 * 1 2 3 31 31 H 1.08997 * 109.49509 * 292.70601 * 3 2 1 32 32 H 1.08996 * 109.49618 * 52.79381 * 3 2 1 33 33 H 1.09000 * 109.79915 * 294.42297 * 4 3 2 34 34 H 1.09001 * 109.69980 * 173.68313 * 4 3 2 35 35 H 1.08003 * 119.74733 * 0.02562 * 10 9 6 36 36 H 1.07994 * 119.87736 * 179.97438 * 11 10 9 37 37 H 1.07998 * 120.12781 * 179.75133 * 12 11 10 38 38 H 0.97000 * 120.00064 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.12874 * 0.02562 * 22 9 6 40 40 H 1.08997 * 109.47175 * 47.16444 * 25 23 5 41 41 H 1.09000 * 109.47709 * 167.16914 * 25 23 5 42 42 H 0.96701 * 114.00246 * 185.65844 * 26 25 23 43 43 H 1.09004 * 109.49092 * 67.29260 * 27 2 1 44 44 H 1.09004 * 109.51295 * 307.22725 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5205 1.3290 0.1866 5 7 4.0869 0.4461 -0.8443 6 16 5.3385 0.9527 -1.8032 7 8 5.4073 2.3647 -1.6601 8 8 5.1704 0.3058 -3.0572 9 6 6.8232 0.3089 -1.1062 10 6 7.3630 -0.8696 -1.5985 11 6 8.5307 -1.3873 -1.0602 12 6 9.1647 -0.7379 -0.0255 13 6 8.6292 0.4617 0.4782 14 6 9.2750 1.1407 1.5371 15 1 8.7003 1.7536 2.2157 16 6 10.6589 1.0185 1.7058 17 7 11.3876 0.4783 0.7632 18 14 11.4655 1.6269 3.2769 19 1 11.4972 0.5277 4.2749 20 1 12.8526 2.0682 2.9824 21 1 10.6882 2.7686 3.8225 22 6 7.4429 0.9778 -0.0758 23 6 3.5164 -0.9009 -0.9969 24 1 3.7562 -1.5017 -0.1196 25 6 4.0943 -1.5652 -2.2482 26 8 3.5295 -0.9597 -3.4129 27 6 1.9955 -0.7728 -1.1330 28 1 -0.3633 -1.0247 0.0771 29 1 -0.3632 0.5791 0.8490 30 1 -0.3633 0.4457 -0.9259 31 1 1.7555 1.8532 -0.9478 32 1 1.5458 1.9337 0.8183 33 1 3.7607 0.9385 1.1755 34 1 3.9322 2.3322 0.0760 35 1 6.8703 -1.3876 -2.4081 36 1 8.9420 -2.3062 -1.4511 37 1 10.0722 -1.1452 0.3951 38 1 12.3468 0.3939 0.8799 39 1 7.0207 1.8956 0.3062 40 1 5.1766 -1.4369 -2.2607 41 1 3.8545 -2.6284 -2.2389 42 1 3.7843 -1.3878 -4.2417 43 1 1.7555 -0.2612 -2.0651 44 1 1.5457 -1.7657 -1.1368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601468627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:52 Heat of formation + Delta-G solvation = -91.656705 kcal Electronic energy + Delta-G solvation = -29072.990182 eV Core-core repulsion = 25117.140072 eV Total energy + Delta-G solvation = -3955.850110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28752 -39.46528 -38.62110 -37.14842 -36.60182 -35.64963 -35.42544 -32.55312 -31.91695 -31.59191 -29.03570 -27.54653 -27.12227 -24.89337 -23.61329 -23.14168 -22.81723 -21.71429 -20.18164 -19.22859 -18.46533 -18.12349 -17.78953 -17.33888 -16.79627 -16.52417 -16.16494 -15.96981 -15.79214 -15.70417 -15.28156 -15.09534 -14.90048 -14.85332 -14.27644 -14.24022 -13.75917 -13.32020 -13.26996 -13.14922 -13.06463 -12.99528 -12.84960 -12.81458 -12.65786 -12.56035 -12.42977 -12.25191 -12.21287 -11.82905 -11.56646 -11.49007 -11.35847 -11.17038 -10.40117 -10.08918 -9.81409 -9.51888 -9.25415 -8.69088 -6.47706 -0.48433 0.41905 0.83144 1.37149 1.45705 1.50602 2.05697 2.18429 2.59198 2.84212 2.95610 3.39684 3.45897 3.54412 3.71855 3.89331 4.16041 4.19689 4.28611 4.28756 4.36459 4.47047 4.51573 4.67060 4.67859 4.70877 4.74544 4.80589 4.87647 4.93859 4.96283 5.05336 5.06459 5.07518 5.20262 5.21209 5.41002 5.54434 5.67859 5.87770 5.94523 6.03741 6.10686 6.12240 6.52582 6.80609 6.84361 7.13962 8.28600 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.003697 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.898938 B = 7572.786014 C = 8333.337391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.552 5.552 3 C 0.050 3.950 4 C 0.113 3.887 5 N -0.991 5.991 6 S 2.701 3.299 7 O -1.005 7.005 8 O -0.943 6.943 9 C -0.644 4.644 10 C -0.143 4.143 11 C -0.124 4.124 12 C -0.135 4.135 13 C 0.063 3.937 14 C -0.500 4.500 15 H 0.079 0.921 16 C 0.033 3.967 17 N -0.833 5.833 18 Si 0.987 3.013 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.259 1.259 22 C -0.143 4.143 23 C 0.156 3.844 24 H 0.101 0.899 25 C 0.045 3.955 26 O -0.554 6.554 27 C 0.060 3.940 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.023 0.977 31 H 0.029 0.971 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.114 0.886 38 H 0.290 0.710 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.386 0.614 43 H 0.039 0.961 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.498 -5.609 -0.896 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.276 5.276 3 C -0.080 4.080 4 C -0.012 4.012 5 N -0.830 5.830 6 S 2.796 3.204 7 O -0.996 6.996 8 O -0.933 6.933 9 C -0.732 4.732 10 C -0.163 4.163 11 C -0.144 4.144 12 C -0.155 4.155 13 C 0.059 3.941 14 C -0.530 4.530 15 H 0.097 0.903 16 C -0.181 4.181 17 N -0.459 5.459 18 Si 0.807 3.193 19 H -0.182 1.182 20 H -0.193 1.193 21 H -0.183 1.183 22 C -0.164 4.164 23 C 0.051 3.949 24 H 0.119 0.881 25 C -0.034 4.034 26 O -0.361 6.361 27 C -0.069 4.069 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.235 0.765 43 H 0.057 0.943 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.438 -4.959 -0.841 17.190 hybrid contribution 1.383 0.149 -0.105 1.395 sum -15.055 -4.810 -0.946 15.833 Atomic orbital electron populations 1.22415 0.85482 1.03295 1.00891 1.61923 1.09120 1.13244 1.43324 1.22506 0.93906 0.90081 1.01512 1.21825 0.93896 0.94012 0.91505 1.57674 1.48678 1.24144 1.52549 1.01534 0.72672 0.72245 0.73971 1.93443 1.87424 1.31530 1.87195 1.93613 1.84911 1.75179 1.39629 1.30504 1.22709 1.08435 1.11545 1.20564 0.98119 0.95868 1.01783 1.21188 0.95885 1.00143 0.97137 1.21686 1.00444 0.94837 0.98521 1.18050 0.91661 0.91705 0.92636 1.19868 0.93581 1.27374 1.12130 0.90300 1.26764 0.97617 0.93309 1.00402 1.69797 1.08257 1.35048 1.32815 0.85124 0.77500 0.79511 0.77136 1.18246 1.19323 1.18327 1.20813 0.99518 0.98742 0.97322 1.21420 0.94032 0.81723 0.97745 0.88144 1.22748 0.98005 0.97274 0.85375 1.86421 1.72783 1.60614 1.16302 1.22294 0.93188 0.99682 0.91767 0.90073 0.90142 0.95852 0.95244 0.87290 0.89773 0.89322 0.84337 0.85296 0.86826 0.89911 0.87849 0.92987 0.89381 0.76482 0.94296 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.58 127.69 1.22 1.63 16 2 N -0.55 -11.50 4.88 -920.51 -4.49 -15.99 16 3 C 0.05 1.11 5.64 86.54 0.49 1.60 16 4 C 0.11 3.11 6.71 86.50 0.58 3.69 16 5 N -0.99 -30.59 3.32 -489.08 -1.63 -32.22 16 6 S 2.70 103.96 5.25 -56.49 -0.30 103.66 16 7 O -1.01 -44.97 15.89 -128.00 -2.03 -47.00 16 8 O -0.94 -35.52 11.14 -118.17 -1.32 -36.84 16 9 C -0.64 -28.35 5.92 22.22 0.13 -28.22 16 10 C -0.14 -5.93 8.77 22.46 0.20 -5.74 16 11 C -0.12 -5.45 10.02 22.22 0.22 -5.23 16 12 C -0.14 -6.87 8.67 22.73 0.20 -6.67 16 13 C 0.06 3.36 5.55 -21.29 -0.12 3.24 16 14 C -0.50 -26.78 9.06 23.46 0.21 -26.57 16 15 H 0.08 4.07 7.87 -2.91 -0.02 4.05 16 16 C 0.03 1.65 5.23 85.26 0.45 2.09 16 17 N -0.83 -42.88 10.87 21.83 0.24 -42.64 16 18 Si 0.99 37.73 29.58 68.60 2.03 39.76 16 19 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 20 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 C -0.14 -7.16 9.26 22.73 0.21 -6.95 16 23 C 0.16 3.97 3.50 44.96 0.16 4.13 16 24 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 25 C 0.05 1.10 5.87 71.98 0.42 1.53 16 26 O -0.55 -14.59 9.49 -124.83 -1.18 -15.78 16 27 C 0.06 1.31 4.73 86.38 0.41 1.72 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 30 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 1.89 8.06 -2.39 -0.02 1.87 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.09 2.62 6.79 -2.39 -0.02 2.60 16 35 H 0.14 4.85 5.82 -2.91 -0.02 4.83 16 36 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.11 5.96 6.22 -2.91 -0.02 5.94 16 38 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 39 H 0.10 5.08 7.76 -2.91 -0.02 5.06 16 40 H 0.05 1.49 2.90 -2.39 -0.01 1.48 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.39 7.67 9.12 -74.06 -0.68 6.99 16 43 H 0.04 0.99 7.18 -2.39 -0.02 0.97 16 44 H 0.10 1.77 8.11 -2.39 -0.02 1.75 16 Total: -1.00 -68.09 353.37 -3.55 -71.63 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.36 Total: 35.14 kcal Atomic # 6 Polarization: -64.52 SS G_CDS: 4.78 Total: -59.74 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -5.88 Total: -90.85 kcal Atomic # 8 Polarization: -95.08 SS G_CDS: -4.53 Total: -99.61 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Atomic # 16 Polarization: 103.96 SS G_CDS: -0.30 Total: 103.66 kcal Total: -68.09 -3.55 -71.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601468627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.023 kcal (2) G-P(sol) polarization free energy of solvation -68.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds