Wall clock time and date at job start Sat Apr 11 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 110.99514 * 2 1 4 4 C 1.53242 * 109.33404 * 187.24947 * 3 2 1 5 5 N 1.47082 * 108.52182 * 306.16831 * 4 3 2 6 6 S 1.65600 * 120.88110 * 231.16374 * 5 4 3 7 7 O 1.42095 * 106.40243 * 213.75522 * 6 5 4 8 8 O 1.42102 * 106.40369 * 346.67741 * 6 5 4 9 9 C 1.76197 * 107.21833 * 100.21506 * 6 5 4 10 10 C 1.37636 * 120.12990 * 118.60597 * 9 6 5 11 11 C 1.38614 * 120.25082 * 179.97438 * 10 9 6 12 12 C 1.38650 * 120.50273 * 0.02784 * 11 10 9 13 13 C 1.37594 * 120.24700 * 359.97292 * 12 11 10 14 14 C 1.40698 * 120.12976 * 298.33649 * 9 6 5 15 15 C 1.41398 * 120.24244 * 359.97438 * 14 9 6 16 16 H 1.07999 * 120.00293 * 331.11966 * 15 14 9 17 17 C 1.39951 * 119.99913 * 151.11215 * 15 14 9 18 18 N 1.30826 * 119.99699 * 166.71460 * 17 15 14 19 19 Si 1.86795 * 120.00195 * 346.71876 * 17 15 14 20 20 H 1.48502 * 109.47392 * 94.88818 * 19 17 15 21 21 H 1.48497 * 109.47296 * 214.89495 * 19 17 15 22 22 H 1.48509 * 109.46874 * 334.89109 * 19 17 15 23 23 C 1.47073 * 118.23708 * 51.18650 * 5 4 3 24 24 H 1.09003 * 109.62738 * 68.52792 * 23 5 4 25 25 C 1.52998 * 109.78997 * 189.00829 * 23 5 4 26 26 O 1.42900 * 109.47238 * 63.57663 * 25 23 5 27 27 C 1.46902 * 110.99617 * 124.29787 * 2 1 3 28 28 H 1.08996 * 109.47688 * 295.70057 * 1 2 3 29 29 H 1.09000 * 109.46879 * 55.70403 * 1 2 3 30 30 H 1.09002 * 109.46585 * 175.69715 * 1 2 3 31 31 H 1.08989 * 109.49285 * 307.20583 * 3 2 1 32 32 H 1.08994 * 109.49179 * 67.29512 * 3 2 1 33 33 H 1.08995 * 109.63233 * 65.87976 * 4 3 2 34 34 H 1.09005 * 109.62633 * 186.26775 * 4 3 2 35 35 H 1.08004 * 119.87476 * 0.02562 * 10 9 6 36 36 H 1.07999 * 119.74628 * 180.02562 * 11 10 9 37 37 H 1.08004 * 119.87646 * 179.97438 * 12 11 10 38 38 H 1.08008 * 120.12687 * 180.02562 * 13 12 11 39 39 H 0.96997 * 119.99455 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.47280 * 183.58036 * 25 23 5 41 41 H 1.08998 * 109.47448 * 303.57901 * 25 23 5 42 42 H 0.96691 * 114.00493 * 180.02562 * 26 25 23 43 43 H 1.09001 * 109.49363 * 52.78931 * 27 2 1 44 44 H 1.09003 * 109.51328 * 292.72094 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5164 1.3312 -0.1825 5 7 4.0869 0.4461 0.8444 6 16 5.3387 0.9525 1.8029 7 8 6.1377 -0.1943 2.0586 8 8 5.8479 2.1370 1.2053 9 6 4.6487 1.4335 3.3511 10 6 5.0196 0.7815 4.5052 11 6 4.4787 1.1582 5.7246 12 6 3.5592 2.1934 5.7970 13 6 3.1739 2.8592 4.6562 14 6 3.7207 2.4892 3.4133 15 6 3.3369 3.1704 2.2352 16 1 4.0241 3.2429 1.4051 17 6 2.0666 3.7506 2.1446 18 7 1.7996 4.5933 1.1803 19 14 0.7522 3.3218 3.4008 20 1 0.7525 4.3376 4.4840 21 1 -0.5773 3.3034 2.7396 22 1 1.0368 1.9831 3.9776 23 6 3.5164 -0.9008 0.9970 24 1 3.7563 -1.5017 0.1197 25 6 4.0900 -1.5676 2.2489 26 8 3.6938 -0.8288 3.4061 27 6 1.9954 -0.7728 1.1330 28 1 -0.3634 0.4456 0.9259 29 1 -0.3633 0.5791 -0.8490 30 1 -0.3632 -1.0248 -0.0771 31 1 1.5457 1.9336 -0.8183 32 1 1.7554 1.8531 0.9479 33 1 3.7563 0.9450 -1.1731 34 1 3.9251 2.3357 -0.0722 35 1 5.7353 -0.0260 4.4605 36 1 4.7758 0.6413 6.6251 37 1 3.1439 2.4782 6.7524 38 1 2.4578 3.6656 4.7149 39 1 0.9192 4.9957 1.1178 40 1 3.7130 -2.5877 2.3224 41 1 5.1779 -1.5861 2.1846 42 1 4.0229 -1.1949 4.2383 43 1 1.5456 -1.7657 1.1364 44 1 1.7554 -0.2616 2.0653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601469600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:56 Heat of formation + Delta-G solvation = -54.728207 kcal Electronic energy + Delta-G solvation = -31510.548304 eV Core-core repulsion = 27556.299534 eV Total energy + Delta-G solvation = -3954.248770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.91247 -37.81885 -37.09474 -35.60965 -34.96259 -34.10912 -33.72133 -31.14101 -30.67580 -29.99566 -27.62203 -25.93590 -25.36235 -23.42319 -22.22071 -21.63865 -21.14921 -19.97700 -18.07264 -17.78386 -17.33960 -16.81157 -16.37684 -15.72593 -15.37121 -14.71749 -14.53030 -14.41049 -14.20942 -14.02709 -13.87461 -13.71174 -13.44716 -13.17669 -12.97880 -12.75485 -12.25122 -11.97512 -11.80691 -11.75047 -11.62342 -11.36354 -11.29643 -11.23200 -11.08057 -10.99601 -10.72636 -10.62196 -10.52731 -10.27344 -10.03198 -9.85993 -9.45135 -9.25455 -9.02612 -8.44942 -7.97207 -7.79167 -7.67417 -7.16835 -4.80913 1.49353 2.21100 2.58633 2.93367 3.01953 3.14866 3.72200 3.77331 4.27226 4.32181 4.66590 4.70415 5.08305 5.18849 5.29186 5.39387 5.55279 5.64699 5.70515 5.74746 5.82649 5.85734 5.92563 5.99875 6.05368 6.06523 6.12393 6.23960 6.31338 6.41296 6.48428 6.49901 6.65575 6.72927 6.81365 7.00564 7.16931 7.21846 7.38463 7.44618 7.47130 7.49027 7.62686 7.89131 8.04206 8.15336 8.37255 8.57257 9.80423 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.009613 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.193055 B = 2912.099083 C = 4018.021687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.545 5.545 3 C 0.038 3.962 4 C 0.135 3.865 5 N -0.985 5.985 6 S 2.711 3.289 7 O -0.997 6.997 8 O -0.976 6.976 9 C -0.719 4.719 10 C 0.039 3.961 11 C -0.264 4.264 12 C -0.044 4.044 13 C -0.238 4.238 14 C 0.168 3.832 15 C -0.460 4.460 16 H 0.124 0.876 17 C 0.095 3.905 18 N -0.783 5.783 19 Si 0.898 3.102 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.236 1.236 23 C 0.177 3.823 24 H 0.085 0.915 25 C -0.012 4.012 26 O -0.546 6.546 27 C 0.049 3.951 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.289 0.711 40 H 0.051 0.949 41 H 0.127 0.873 42 H 0.373 0.627 43 H 0.070 0.930 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 -9.158 0.017 9.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.091 4.091 4 C 0.010 3.990 5 N -0.821 5.821 6 S 2.811 3.189 7 O -0.988 6.988 8 O -0.966 6.966 9 C -0.814 4.814 10 C 0.019 3.981 11 C -0.285 4.285 12 C -0.063 4.063 13 C -0.257 4.257 14 C 0.164 3.836 15 C -0.488 4.488 16 H 0.141 0.859 17 C -0.128 4.128 18 N -0.405 5.405 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.219 1.219 22 H -0.159 1.159 23 C 0.070 3.930 24 H 0.103 0.897 25 C -0.091 4.091 26 O -0.353 6.353 27 C -0.080 4.080 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.143 0.857 42 H 0.222 0.778 43 H 0.088 0.912 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.832 -8.803 -1.380 9.096 hybrid contribution -1.693 0.168 2.292 2.854 sum -3.525 -8.635 0.912 9.371 Atomic orbital electron populations 1.22297 0.88188 1.01316 1.00291 1.61969 1.06872 1.15035 1.43122 1.22618 0.95448 0.88027 1.02968 1.21483 0.92873 0.95054 0.89576 1.57563 1.53972 1.21160 1.49391 1.00823 0.72356 0.72060 0.73636 1.93215 1.68629 1.50204 1.86730 1.93492 1.77881 1.47986 1.77266 1.29609 1.23464 1.11416 1.16885 1.20118 0.93061 0.93210 0.91694 1.20401 1.06902 1.04743 0.96429 1.20712 0.94928 0.94189 0.96487 1.21054 1.07191 1.03979 0.93524 1.17014 0.87339 0.86784 0.92509 1.20275 1.00307 1.26504 1.01680 0.85898 1.26073 0.99857 0.91315 0.95512 1.69665 1.23473 1.18354 1.28985 0.86564 0.78118 0.82523 0.80306 1.19668 1.21881 1.15863 1.20899 0.92734 0.83102 0.96278 0.89673 1.23732 1.04624 0.94691 0.86077 1.87049 1.78932 1.53517 1.15799 1.22383 0.94647 0.97878 0.93122 0.96066 0.91690 0.91946 0.90814 0.91192 0.92258 0.87328 0.87523 0.88530 0.88850 0.88413 0.90004 0.93082 0.85656 0.77798 0.91207 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.58 60.07 0.58 0.97 16 2 N -0.55 -8.95 4.88 -242.60 -1.18 -10.14 16 3 C 0.04 0.71 5.45 -3.70 -0.02 0.69 16 4 C 0.14 2.57 5.53 -3.60 -0.02 2.55 16 5 N -0.98 -18.70 3.16 -106.20 -0.34 -19.03 16 6 S 2.71 57.88 4.42 -107.50 -0.48 57.40 16 7 O -1.00 -20.48 12.91 -61.47 -0.79 -21.28 16 8 O -0.98 -23.92 14.75 -57.17 -0.84 -24.76 16 9 C -0.72 -15.89 4.23 -38.87 -0.16 -16.06 16 10 C 0.04 0.77 6.02 -39.66 -0.24 0.53 16 11 C -0.26 -5.05 10.05 -39.29 -0.39 -5.44 16 12 C -0.04 -0.91 10.02 -39.66 -0.40 -1.31 16 13 C -0.24 -5.49 6.94 -38.87 -0.27 -5.76 16 14 C 0.17 4.04 5.19 -106.82 -0.55 3.49 16 15 C -0.46 -11.37 6.45 -37.74 -0.24 -11.61 16 16 H 0.12 3.23 3.83 -52.49 -0.20 3.02 16 17 C 0.09 2.24 3.65 -17.34 -0.06 2.17 16 18 N -0.78 -18.49 13.93 55.55 0.77 -17.72 16 19 Si 0.90 19.49 23.80 -169.99 -4.05 15.45 16 20 H -0.27 -5.81 6.75 56.52 0.38 -5.43 16 21 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.24 -5.32 6.51 56.52 0.37 -4.96 16 23 C 0.18 2.87 3.41 -67.50 -0.23 2.63 16 24 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 25 C -0.01 -0.18 5.87 37.16 0.22 0.04 16 26 O -0.55 -9.02 7.51 -41.31 -0.31 -9.33 16 27 C 0.05 0.80 4.82 -3.70 -0.02 0.78 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.31 8.06 -51.94 -0.42 0.89 16 32 H 0.07 1.48 4.14 -51.93 -0.21 1.26 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.11 2.32 4.98 -51.93 -0.26 2.06 16 35 H 0.11 1.85 7.04 -52.48 -0.37 1.48 16 36 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.10 2.25 4.20 -52.48 -0.22 2.03 16 39 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.13 2.04 4.68 -54.14 -0.25 1.79 16 42 H 0.37 5.11 7.52 45.56 0.34 5.45 16 43 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 44 H 0.06 1.08 7.39 -51.93 -0.38 0.69 16 LS Contribution 326.09 15.07 4.91 4.91 Total: -1.00 -28.05 326.09 -9.09 -37.14 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -4.97 Total: 13.69 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: -1.82 Total: -26.34 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.75 Total: -46.88 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -1.95 Total: -55.37 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.05 Total: 15.45 kcal Atomic # 16 Polarization: 57.88 SS G_CDS: -0.48 Total: 57.40 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.05 -9.09 -37.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.586 kcal (2) G-P(sol) polarization free energy of solvation -28.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds