Wall clock time and date at job start Sat Apr 11 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 110.99514 * 2 1 4 4 C 1.53242 * 109.33404 * 187.24947 * 3 2 1 5 5 N 1.47082 * 108.52182 * 306.16831 * 4 3 2 6 6 S 1.65600 * 120.88110 * 231.16374 * 5 4 3 7 7 O 1.42095 * 106.40243 * 213.75522 * 6 5 4 8 8 O 1.42102 * 106.40369 * 346.67741 * 6 5 4 9 9 C 1.76197 * 107.21833 * 100.21506 * 6 5 4 10 10 C 1.37636 * 120.12990 * 118.60597 * 9 6 5 11 11 C 1.38614 * 120.25082 * 179.97438 * 10 9 6 12 12 C 1.38650 * 120.50273 * 0.02784 * 11 10 9 13 13 C 1.37594 * 120.24700 * 359.97292 * 12 11 10 14 14 C 1.40698 * 120.12976 * 298.33649 * 9 6 5 15 15 C 1.41398 * 120.24244 * 359.97438 * 14 9 6 16 16 H 1.07999 * 120.00293 * 331.11966 * 15 14 9 17 17 C 1.39951 * 119.99913 * 151.11215 * 15 14 9 18 18 N 1.30826 * 119.99699 * 166.71460 * 17 15 14 19 19 Si 1.86795 * 120.00195 * 346.71876 * 17 15 14 20 20 H 1.48502 * 109.47392 * 94.88818 * 19 17 15 21 21 H 1.48497 * 109.47296 * 214.89495 * 19 17 15 22 22 H 1.48509 * 109.46874 * 334.89109 * 19 17 15 23 23 C 1.47073 * 118.23708 * 51.18650 * 5 4 3 24 24 H 1.09003 * 109.62738 * 68.52792 * 23 5 4 25 25 C 1.52998 * 109.78997 * 189.00829 * 23 5 4 26 26 O 1.42900 * 109.47238 * 63.57663 * 25 23 5 27 27 C 1.46902 * 110.99617 * 124.29787 * 2 1 3 28 28 H 1.08996 * 109.47688 * 295.70057 * 1 2 3 29 29 H 1.09000 * 109.46879 * 55.70403 * 1 2 3 30 30 H 1.09002 * 109.46585 * 175.69715 * 1 2 3 31 31 H 1.08989 * 109.49285 * 307.20583 * 3 2 1 32 32 H 1.08994 * 109.49179 * 67.29512 * 3 2 1 33 33 H 1.08995 * 109.63233 * 65.87976 * 4 3 2 34 34 H 1.09005 * 109.62633 * 186.26775 * 4 3 2 35 35 H 1.08004 * 119.87476 * 0.02562 * 10 9 6 36 36 H 1.07999 * 119.74628 * 180.02562 * 11 10 9 37 37 H 1.08004 * 119.87646 * 179.97438 * 12 11 10 38 38 H 1.08008 * 120.12687 * 180.02562 * 13 12 11 39 39 H 0.96997 * 119.99455 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.47280 * 183.58036 * 25 23 5 41 41 H 1.08998 * 109.47448 * 303.57901 * 25 23 5 42 42 H 0.96691 * 114.00493 * 180.02562 * 26 25 23 43 43 H 1.09001 * 109.49363 * 52.78931 * 27 2 1 44 44 H 1.09003 * 109.51328 * 292.72094 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5164 1.3312 -0.1825 5 7 4.0869 0.4461 0.8444 6 16 5.3387 0.9525 1.8029 7 8 6.1377 -0.1943 2.0586 8 8 5.8479 2.1370 1.2053 9 6 4.6487 1.4335 3.3511 10 6 5.0196 0.7815 4.5052 11 6 4.4787 1.1582 5.7246 12 6 3.5592 2.1934 5.7970 13 6 3.1739 2.8592 4.6562 14 6 3.7207 2.4892 3.4133 15 6 3.3369 3.1704 2.2352 16 1 4.0241 3.2429 1.4051 17 6 2.0666 3.7506 2.1446 18 7 1.7996 4.5933 1.1803 19 14 0.7522 3.3218 3.4008 20 1 0.7525 4.3376 4.4840 21 1 -0.5773 3.3034 2.7396 22 1 1.0368 1.9831 3.9776 23 6 3.5164 -0.9008 0.9970 24 1 3.7563 -1.5017 0.1197 25 6 4.0900 -1.5676 2.2489 26 8 3.6938 -0.8288 3.4061 27 6 1.9954 -0.7728 1.1330 28 1 -0.3634 0.4456 0.9259 29 1 -0.3633 0.5791 -0.8490 30 1 -0.3632 -1.0248 -0.0771 31 1 1.5457 1.9336 -0.8183 32 1 1.7554 1.8531 0.9479 33 1 3.7563 0.9450 -1.1731 34 1 3.9251 2.3357 -0.0722 35 1 5.7353 -0.0260 4.4605 36 1 4.7758 0.6413 6.6251 37 1 3.1439 2.4782 6.7524 38 1 2.4578 3.6656 4.7149 39 1 0.9192 4.9957 1.1178 40 1 3.7130 -2.5877 2.3224 41 1 5.1779 -1.5861 2.1846 42 1 4.0229 -1.1949 4.2383 43 1 1.5456 -1.7657 1.1364 44 1 1.7554 -0.2616 2.0653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601469600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:55 Heat of formation + Delta-G solvation = -77.565925 kcal Electronic energy + Delta-G solvation = -31511.538621 eV Core-core repulsion = 27556.299534 eV Total energy + Delta-G solvation = -3955.239088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.27802 -39.43827 -38.64323 -37.04738 -36.67406 -35.68707 -35.23555 -32.51759 -32.36813 -31.62307 -28.95680 -27.19687 -27.05858 -24.78421 -23.82680 -23.02393 -22.78619 -21.41117 -19.67329 -19.49147 -18.80826 -18.24904 -17.87187 -17.25771 -17.02666 -16.17559 -15.92194 -15.80943 -15.67843 -15.56453 -15.45486 -15.26313 -14.92983 -14.62524 -14.52978 -14.19478 -13.93306 -13.46966 -13.29572 -13.14780 -13.07297 -13.01216 -12.80461 -12.72145 -12.65562 -12.59830 -12.27119 -12.16242 -12.09088 -11.67941 -11.59686 -11.42583 -11.15983 -10.94401 -10.35770 -9.89639 -9.59290 -9.31638 -9.15933 -8.93113 -6.59408 -0.13013 0.53564 0.90687 1.18386 1.28014 1.39454 2.02329 2.18974 2.57590 2.98513 3.08982 3.44167 3.49756 3.70753 3.87071 4.05343 4.25214 4.32442 4.35704 4.37395 4.46943 4.53527 4.59270 4.69867 4.71703 4.75103 4.77300 4.79630 4.87570 4.96599 5.00724 5.14572 5.17409 5.27662 5.35753 5.37310 5.52734 5.67431 5.79253 5.89930 5.96095 6.10221 6.17996 6.19500 6.37089 6.64375 6.81972 6.97725 8.09540 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.009613 C = 0.006967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.193055 B = 2912.099083 C = 4018.021687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.541 5.541 3 C 0.044 3.956 4 C 0.136 3.864 5 N -0.983 5.983 6 S 2.718 3.282 7 O -0.991 6.991 8 O -1.016 7.016 9 C -0.727 4.727 10 C 0.038 3.962 11 C -0.250 4.250 12 C -0.047 4.047 13 C -0.269 4.269 14 C 0.150 3.850 15 C -0.482 4.482 16 H 0.098 0.902 17 C 0.079 3.921 18 N -0.812 5.812 19 Si 0.939 3.061 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.250 1.250 23 C 0.166 3.834 24 H 0.109 0.891 25 C -0.009 4.009 26 O -0.566 6.566 27 C 0.054 3.946 28 H 0.005 0.995 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.295 0.705 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.384 0.616 43 H 0.101 0.899 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 -12.118 1.323 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.085 4.085 4 C 0.011 3.989 5 N -0.820 5.820 6 S 2.818 3.182 7 O -0.982 6.982 8 O -1.007 7.007 9 C -0.822 4.822 10 C 0.019 3.981 11 C -0.269 4.269 12 C -0.065 4.065 13 C -0.289 4.289 14 C 0.146 3.854 15 C -0.511 4.511 16 H 0.116 0.884 17 C -0.141 4.141 18 N -0.436 5.436 19 Si 0.766 3.234 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.173 1.173 23 C 0.060 3.940 24 H 0.127 0.873 25 C -0.088 4.088 26 O -0.375 6.375 27 C -0.075 4.075 28 H 0.023 0.977 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.132 0.868 42 H 0.235 0.765 43 H 0.120 0.880 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.216 -11.768 -0.060 11.975 hybrid contribution -1.475 0.935 1.975 2.637 sum -3.691 -10.833 1.916 11.604 Atomic orbital electron populations 1.22401 0.86791 1.03136 0.99833 1.62022 1.08104 1.13395 1.43022 1.22452 0.95187 0.89314 1.01590 1.21409 0.93150 0.93864 0.90489 1.57399 1.53651 1.22268 1.48705 1.00493 0.72729 0.71449 0.73536 1.93246 1.69005 1.49234 1.86695 1.93441 1.79134 1.50075 1.78043 1.29839 1.22772 1.11285 1.18303 1.20481 0.93125 0.93375 0.91148 1.20879 1.04983 1.03462 0.97623 1.21132 0.94634 0.93890 0.96862 1.21157 1.08350 1.05057 0.94295 1.17203 0.88191 0.87378 0.92645 1.20147 1.00672 1.28580 1.01660 0.88428 1.26356 1.00418 0.91052 0.96244 1.69676 1.24208 1.19616 1.30129 0.85932 0.77102 0.81356 0.79052 1.19610 1.21098 1.17328 1.21312 0.92746 0.81811 0.98108 0.87303 1.23711 1.03827 0.96207 0.85022 1.87022 1.79109 1.54593 1.16779 1.22383 0.94850 0.98840 0.91448 0.97657 0.90890 0.89120 0.90761 0.93805 0.90172 0.90465 0.84843 0.84498 0.85904 0.89230 0.89385 0.89180 0.86770 0.76503 0.88039 0.95712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.58 127.69 1.22 1.94 16 2 N -0.54 -16.99 4.88 -921.46 -4.50 -21.49 16 3 C 0.04 1.65 5.45 86.38 0.47 2.12 16 4 C 0.14 5.31 5.53 86.35 0.48 5.78 16 5 N -0.98 -37.07 3.16 -489.91 -1.55 -38.62 16 6 S 2.72 116.40 4.42 -56.49 -0.25 116.15 16 7 O -0.99 -39.41 12.91 -123.90 -1.60 -41.01 16 8 O -1.02 -51.87 14.75 -128.00 -1.89 -53.75 16 9 C -0.73 -31.87 4.23 22.73 0.10 -31.77 16 10 C 0.04 1.42 6.02 22.22 0.13 1.55 16 11 C -0.25 -8.62 10.05 22.46 0.23 -8.39 16 12 C -0.05 -1.81 10.02 22.22 0.22 -1.59 16 13 C -0.27 -12.37 6.94 22.73 0.16 -12.22 16 14 C 0.15 7.33 5.19 -21.29 -0.11 7.22 16 15 C -0.48 -24.93 6.45 23.46 0.15 -24.78 16 16 H 0.10 5.49 3.83 -2.91 -0.01 5.48 16 17 C 0.08 3.87 3.65 85.26 0.31 4.18 16 18 N -0.81 -40.24 13.93 21.83 0.30 -39.93 16 19 Si 0.94 41.17 23.80 68.60 1.63 42.80 16 20 H -0.27 -11.58 6.75 99.48 0.67 -10.91 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.25 -11.37 6.51 99.48 0.65 -10.72 16 23 C 0.17 5.01 3.41 44.96 0.15 5.16 16 24 H 0.11 2.79 8.14 -2.39 -0.02 2.78 16 25 C -0.01 -0.24 5.87 71.98 0.42 0.19 16 26 O -0.57 -17.31 7.51 -143.17 -1.07 -18.39 16 27 C 0.05 1.64 4.82 86.38 0.42 2.06 16 28 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 2.71 8.06 -2.39 -0.02 2.69 16 32 H 0.04 1.92 4.14 -2.39 -0.01 1.91 16 33 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.08 3.53 4.98 -2.38 -0.01 3.51 16 35 H 0.13 4.16 7.04 -2.91 -0.02 4.14 16 36 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.12 3.96 8.06 -2.91 -0.02 3.93 16 38 H 0.09 4.18 4.20 -2.91 -0.01 4.17 16 39 H 0.30 13.29 8.30 -92.71 -0.77 12.52 16 40 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.12 3.38 4.68 -37.45 -0.18 3.21 16 42 H 0.38 9.25 7.52 -74.06 -0.56 8.69 16 43 H 0.10 2.42 8.11 -2.39 -0.02 2.40 16 44 H 0.02 0.92 7.39 -2.39 -0.02 0.90 16 Total: -1.00 -62.94 326.09 -4.33 -67.27 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: 0.24 Total: 35.51 kcal Atomic # 6 Polarization: -52.89 SS G_CDS: 4.35 Total: -48.54 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -5.75 Total: -100.04 kcal Atomic # 8 Polarization: -108.59 SS G_CDS: -4.56 Total: -113.15 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.63 Total: 42.80 kcal Atomic # 16 Polarization: 116.40 SS G_CDS: -0.25 Total: 116.15 kcal Total: -62.94 -4.33 -67.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.291 kcal (2) G-P(sol) polarization free energy of solvation -62.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds