Wall clock time and date at job start Sat Apr 11 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00552 * 2 1 4 4 C 1.53236 * 109.33969 * 172.74519 * 3 2 1 5 5 N 1.47082 * 108.52232 * 53.82743 * 4 3 2 6 6 S 1.65600 * 120.87693 * 128.79211 * 5 4 3 7 7 O 1.42105 * 106.39883 * 225.25181 * 6 5 4 8 8 O 1.42096 * 106.40763 * 358.17607 * 6 5 4 9 9 C 1.76201 * 107.21659 * 111.71818 * 6 5 4 10 10 C 1.37631 * 120.13230 * 114.55234 * 9 6 5 11 11 C 1.38616 * 120.25048 * 180.02562 * 10 9 6 12 12 C 1.38656 * 120.50124 * 359.97438 * 11 10 9 13 13 C 1.37598 * 120.24800 * 0.02562 * 12 11 10 14 14 C 1.40704 * 120.12521 * 294.27940 * 9 6 5 15 15 C 1.41393 * 120.24125 * 359.97438 * 14 9 6 16 16 H 1.07996 * 120.00542 * 29.36363 * 15 14 9 17 17 C 1.39951 * 119.99959 * 209.36457 * 15 14 9 18 18 N 1.30821 * 119.99730 * 10.79190 * 17 15 14 19 19 Si 1.86801 * 120.00139 * 190.79268 * 17 15 14 20 20 H 1.48498 * 109.47081 * 89.99918 * 19 17 15 21 21 H 1.48498 * 109.47142 * 210.00046 * 19 17 15 22 22 H 1.48496 * 109.47091 * 329.99812 * 19 17 15 23 23 C 1.47072 * 118.23574 * 308.81521 * 5 4 3 24 24 H 1.08998 * 109.63198 * 291.47371 * 23 5 4 25 25 C 1.53007 * 109.62554 * 171.09004 * 23 5 4 26 26 O 1.42897 * 109.46977 * 289.18513 * 25 23 5 27 27 C 1.46901 * 110.99809 * 235.69131 * 2 1 3 28 28 H 1.09006 * 109.46664 * 56.04830 * 1 2 3 29 29 H 1.09000 * 109.47231 * 296.05450 * 1 2 3 30 30 H 1.08992 * 109.47589 * 176.04389 * 1 2 3 31 31 H 1.09004 * 109.49117 * 292.70554 * 3 2 1 32 32 H 1.09004 * 109.49184 * 52.78127 * 3 2 1 33 33 H 1.08995 * 109.62730 * 173.53830 * 4 3 2 34 34 H 1.09002 * 109.63057 * 293.92144 * 4 3 2 35 35 H 1.08005 * 119.87761 * 359.97438 * 10 9 6 36 36 H 1.08005 * 119.74538 * 179.97438 * 11 10 9 37 37 H 1.07995 * 119.87093 * 179.97438 * 12 11 10 38 38 H 1.07997 * 120.12540 * 179.97438 * 13 12 11 39 39 H 0.97003 * 120.00149 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.46949 * 49.18582 * 25 23 5 41 41 H 1.08997 * 109.46867 * 169.18561 * 25 23 5 42 42 H 0.96704 * 113.99846 * 179.97438 * 26 25 23 43 43 H 1.08999 * 109.49313 * 307.21968 * 27 2 1 44 44 H 1.08993 * 109.49006 * 67.29892 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 3.5165 1.3310 0.1826 5 7 4.0870 0.4457 -0.8441 6 16 5.3383 0.9524 -1.8032 7 8 5.0073 0.5681 -3.1307 8 8 5.6130 2.2952 -1.4284 9 6 6.7566 0.0096 -1.3513 10 6 7.3183 -0.8677 -2.2508 11 6 8.4338 -1.6110 -1.8977 12 6 8.9967 -1.4800 -0.6373 13 6 8.4518 -0.6090 0.2780 14 6 7.3228 0.1550 -0.0715 15 6 6.7580 1.0578 0.8587 16 1 5.7007 1.2753 0.8266 17 6 7.5693 1.6698 1.8209 18 7 8.8713 1.5769 1.7336 19 14 6.7931 2.6193 3.2300 20 1 6.5557 1.7021 4.3734 21 1 7.7058 3.7117 3.6529 22 1 5.5008 3.1989 2.7837 23 6 3.5163 -0.9012 -0.9966 24 1 3.7560 -1.5020 -0.1193 25 6 4.0943 -1.5656 -2.2479 26 8 3.5653 -0.9289 -3.4127 27 6 1.9954 -0.7730 -1.1328 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 0.4514 0.9232 30 1 -0.3634 -1.0251 -0.0709 31 1 1.7557 1.8531 -0.9479 32 1 1.5457 1.9337 0.8183 33 1 3.9257 2.3348 0.0689 34 1 3.7562 0.9481 1.1746 35 1 6.8879 -0.9781 -3.2352 36 1 8.8678 -2.2973 -2.6098 37 1 9.8655 -2.0644 -0.3729 38 1 8.8916 -0.5088 1.2593 39 1 9.4337 2.0007 2.4007 40 1 5.1799 -1.4686 -2.2422 41 1 3.8238 -2.6214 -2.2564 42 1 3.8896 -1.2994 -4.2450 43 1 1.5455 -1.7658 -1.1361 44 1 1.7555 -0.2615 -2.0649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601469601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:59 Heat of formation + Delta-G solvation = -72.083816 kcal Electronic energy + Delta-G solvation = -30252.310556 eV Core-core repulsion = 26297.309190 eV Total energy + Delta-G solvation = -3955.001366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.00966 -37.61979 -36.81820 -35.53184 -34.63952 -34.11894 -33.81552 -31.31807 -30.23612 -29.61477 -27.82122 -26.12956 -25.52621 -23.64390 -21.90906 -21.58617 -21.14436 -20.31486 -17.94164 -17.56713 -17.01291 -16.79689 -16.27934 -15.57741 -15.35460 -14.77631 -14.74057 -14.60615 -14.38639 -14.01194 -13.66435 -13.55095 -13.21095 -13.08010 -13.00324 -12.72031 -12.19590 -11.96251 -11.83985 -11.67665 -11.45462 -11.35534 -11.28638 -11.16107 -11.12121 -10.85118 -10.80318 -10.57036 -10.53355 -10.42106 -10.04569 -9.89503 -9.44849 -9.33254 -9.20544 -8.53962 -8.09998 -7.95998 -7.58825 -7.00657 -4.73861 1.57594 2.34771 2.71593 2.98557 3.02998 3.11423 3.79438 3.80048 4.04873 4.42009 4.64878 4.87462 5.01924 5.06156 5.22909 5.31832 5.38117 5.45656 5.50606 5.60002 5.62523 5.76182 5.80726 5.82974 5.85625 5.96389 5.98412 6.08091 6.20972 6.30931 6.38251 6.47353 6.54103 6.78229 6.94008 7.04851 7.14577 7.17106 7.24412 7.33429 7.49123 7.67102 7.79701 7.91229 8.19470 8.30253 8.53035 8.65637 9.92817 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.006744 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.361530 B = 4150.774071 C = 5778.886641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.543 5.543 3 C 0.044 3.956 4 C 0.123 3.877 5 N -0.994 5.994 6 S 2.692 3.308 7 O -0.964 6.964 8 O -0.971 6.971 9 C -0.778 4.778 10 C -0.008 4.008 11 C -0.250 4.250 12 C -0.079 4.079 13 C -0.154 4.154 14 C 0.186 3.814 15 C -0.449 4.449 16 H 0.093 0.907 17 C 0.081 3.919 18 N -0.779 5.779 19 Si 0.912 3.088 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.252 1.252 23 C 0.172 3.828 24 H 0.088 0.912 25 C 0.039 3.961 26 O -0.530 6.530 27 C 0.054 3.946 28 H 0.022 0.978 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.287 0.713 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.372 0.628 43 H 0.076 0.924 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.525 -4.655 -0.804 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.268 5.268 3 C -0.085 4.085 4 C -0.003 4.003 5 N -0.830 5.830 6 S 2.791 3.209 7 O -0.955 6.955 8 O -0.961 6.961 9 C -0.872 4.872 10 C -0.027 4.027 11 C -0.270 4.270 12 C -0.098 4.098 13 C -0.174 4.174 14 C 0.182 3.818 15 C -0.477 4.477 16 H 0.111 0.889 17 C -0.140 4.140 18 N -0.403 5.403 19 Si 0.735 3.265 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.175 1.175 23 C 0.065 3.935 24 H 0.106 0.894 25 C -0.040 4.040 26 O -0.334 6.334 27 C -0.075 4.075 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.141 0.859 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.218 0.782 43 H 0.094 0.906 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.537 -3.742 -0.454 11.191 hybrid contribution 0.440 -0.157 -0.018 0.467 sum -10.097 -3.899 -0.472 10.834 Atomic orbital electron populations 1.22331 0.87638 1.01571 1.00545 1.61877 1.07178 1.13935 1.43766 1.22500 0.96154 0.89156 1.00710 1.21507 0.91362 0.95151 0.92246 1.57923 1.50693 1.21995 1.52396 1.01542 0.72819 0.73641 0.72941 1.93563 1.83170 1.83723 1.35004 1.93487 1.84517 1.34387 1.83721 1.30085 1.26721 1.25943 1.04456 1.20181 0.94160 0.92351 0.96036 1.20479 1.01607 1.07029 0.97887 1.20889 0.97483 0.97310 0.94114 1.21520 0.99097 0.97054 0.99757 1.17015 0.89483 0.87319 0.88004 1.20038 0.97186 1.19593 1.10855 0.88892 1.25947 0.94502 0.95411 0.98172 1.69777 1.04811 1.33711 1.31953 0.86215 0.80844 0.79427 0.80053 1.18881 1.19793 1.17523 1.20928 0.92495 0.83674 0.96424 0.89412 1.22686 0.99327 0.95577 0.86457 1.86575 1.70108 1.62059 1.14707 1.22348 0.94740 0.98149 0.92282 0.95898 0.91517 0.91631 0.94499 0.90002 0.88190 0.90516 0.87575 0.88843 0.88875 0.85851 0.90206 0.91563 0.92653 0.78164 0.90581 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.62 60.06 0.58 0.87 16 2 N -0.54 -7.48 4.88 -242.61 -1.18 -8.66 16 3 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 4 C 0.12 2.14 4.81 -3.60 -0.02 2.12 16 5 N -0.99 -18.70 3.04 -106.20 -0.32 -19.02 16 6 S 2.69 59.96 4.41 -107.50 -0.47 59.49 16 7 O -0.96 -21.11 11.80 -67.46 -0.80 -21.91 16 8 O -0.97 -24.72 14.87 -57.17 -0.85 -25.57 16 9 C -0.78 -18.42 5.26 -38.87 -0.20 -18.63 16 10 C -0.01 -0.17 7.84 -39.66 -0.31 -0.48 16 11 C -0.25 -5.33 10.05 -39.29 -0.39 -5.73 16 12 C -0.08 -1.76 10.02 -39.66 -0.40 -2.15 16 13 C -0.15 -3.80 8.65 -38.87 -0.34 -4.14 16 14 C 0.19 4.74 5.54 -106.82 -0.59 4.14 16 15 C -0.45 -11.24 7.60 -37.74 -0.29 -11.53 16 16 H 0.09 2.19 3.59 -52.49 -0.19 2.00 16 17 C 0.08 1.94 5.25 -17.34 -0.09 1.85 16 18 N -0.78 -19.24 10.91 55.55 0.61 -18.63 16 19 Si 0.91 17.98 29.57 -169.99 -5.03 12.95 16 20 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.25 -4.86 7.11 56.52 0.40 -4.46 16 23 C 0.17 2.78 3.49 -67.49 -0.24 2.55 16 24 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 25 C 0.04 0.61 5.91 37.16 0.22 0.83 16 26 O -0.53 -8.58 9.09 -60.51 -0.55 -9.13 16 27 C 0.05 0.77 4.76 -3.70 -0.02 0.75 16 28 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.63 8.00 -51.93 -0.42 0.21 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 33 H 0.10 1.85 6.65 -51.93 -0.35 1.50 16 34 H 0.08 1.31 7.56 -51.93 -0.39 0.92 16 35 H 0.11 2.11 6.94 -52.48 -0.36 1.75 16 36 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.12 3.07 6.29 -52.49 -0.33 2.74 16 39 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 40 H 0.07 1.17 3.26 -51.93 -0.17 1.00 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.37 4.82 9.12 45.56 0.42 5.23 16 43 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 44 H 0.05 0.85 7.22 -51.93 -0.38 0.48 16 LS Contribution 344.19 15.07 5.19 5.19 Total: -1.00 -30.52 344.19 -10.62 -41.14 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -5.10 Total: 13.09 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: -2.11 Total: -28.92 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.90 Total: -46.32 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -2.20 Total: -56.62 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 59.96 SS G_CDS: -0.47 Total: 59.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.52 -10.62 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.944 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds