Wall clock time and date at job start Sat Apr 11 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00552 * 2 1 4 4 C 1.53236 * 109.33969 * 172.74519 * 3 2 1 5 5 N 1.47082 * 108.52232 * 53.82743 * 4 3 2 6 6 S 1.65600 * 120.87693 * 128.79211 * 5 4 3 7 7 O 1.42105 * 106.39883 * 225.25181 * 6 5 4 8 8 O 1.42096 * 106.40763 * 358.17607 * 6 5 4 9 9 C 1.76201 * 107.21659 * 111.71818 * 6 5 4 10 10 C 1.37631 * 120.13230 * 114.55234 * 9 6 5 11 11 C 1.38616 * 120.25048 * 180.02562 * 10 9 6 12 12 C 1.38656 * 120.50124 * 359.97438 * 11 10 9 13 13 C 1.37598 * 120.24800 * 0.02562 * 12 11 10 14 14 C 1.40704 * 120.12521 * 294.27940 * 9 6 5 15 15 C 1.41393 * 120.24125 * 359.97438 * 14 9 6 16 16 H 1.07996 * 120.00542 * 29.36363 * 15 14 9 17 17 C 1.39951 * 119.99959 * 209.36457 * 15 14 9 18 18 N 1.30821 * 119.99730 * 10.79190 * 17 15 14 19 19 Si 1.86801 * 120.00139 * 190.79268 * 17 15 14 20 20 H 1.48498 * 109.47081 * 89.99918 * 19 17 15 21 21 H 1.48498 * 109.47142 * 210.00046 * 19 17 15 22 22 H 1.48496 * 109.47091 * 329.99812 * 19 17 15 23 23 C 1.47072 * 118.23574 * 308.81521 * 5 4 3 24 24 H 1.08998 * 109.63198 * 291.47371 * 23 5 4 25 25 C 1.53007 * 109.62554 * 171.09004 * 23 5 4 26 26 O 1.42897 * 109.46977 * 289.18513 * 25 23 5 27 27 C 1.46901 * 110.99809 * 235.69131 * 2 1 3 28 28 H 1.09006 * 109.46664 * 56.04830 * 1 2 3 29 29 H 1.09000 * 109.47231 * 296.05450 * 1 2 3 30 30 H 1.08992 * 109.47589 * 176.04389 * 1 2 3 31 31 H 1.09004 * 109.49117 * 292.70554 * 3 2 1 32 32 H 1.09004 * 109.49184 * 52.78127 * 3 2 1 33 33 H 1.08995 * 109.62730 * 173.53830 * 4 3 2 34 34 H 1.09002 * 109.63057 * 293.92144 * 4 3 2 35 35 H 1.08005 * 119.87761 * 359.97438 * 10 9 6 36 36 H 1.08005 * 119.74538 * 179.97438 * 11 10 9 37 37 H 1.07995 * 119.87093 * 179.97438 * 12 11 10 38 38 H 1.07997 * 120.12540 * 179.97438 * 13 12 11 39 39 H 0.97003 * 120.00149 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.46949 * 49.18582 * 25 23 5 41 41 H 1.08997 * 109.46867 * 169.18561 * 25 23 5 42 42 H 0.96704 * 113.99846 * 179.97438 * 26 25 23 43 43 H 1.08999 * 109.49313 * 307.21968 * 27 2 1 44 44 H 1.08993 * 109.49006 * 67.29892 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 3.5165 1.3310 0.1826 5 7 4.0870 0.4457 -0.8441 6 16 5.3383 0.9524 -1.8032 7 8 5.0073 0.5681 -3.1307 8 8 5.6130 2.2952 -1.4284 9 6 6.7566 0.0096 -1.3513 10 6 7.3183 -0.8677 -2.2508 11 6 8.4338 -1.6110 -1.8977 12 6 8.9967 -1.4800 -0.6373 13 6 8.4518 -0.6090 0.2780 14 6 7.3228 0.1550 -0.0715 15 6 6.7580 1.0578 0.8587 16 1 5.7007 1.2753 0.8266 17 6 7.5693 1.6698 1.8209 18 7 8.8713 1.5769 1.7336 19 14 6.7931 2.6193 3.2300 20 1 6.5557 1.7021 4.3734 21 1 7.7058 3.7117 3.6529 22 1 5.5008 3.1989 2.7837 23 6 3.5163 -0.9012 -0.9966 24 1 3.7560 -1.5020 -0.1193 25 6 4.0943 -1.5656 -2.2479 26 8 3.5653 -0.9289 -3.4127 27 6 1.9954 -0.7730 -1.1328 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 0.4514 0.9232 30 1 -0.3634 -1.0251 -0.0709 31 1 1.7557 1.8531 -0.9479 32 1 1.5457 1.9337 0.8183 33 1 3.9257 2.3348 0.0689 34 1 3.7562 0.9481 1.1746 35 1 6.8879 -0.9781 -3.2352 36 1 8.8678 -2.2973 -2.6098 37 1 9.8655 -2.0644 -0.3729 38 1 8.8916 -0.5088 1.2593 39 1 9.4337 2.0007 2.4007 40 1 5.1799 -1.4686 -2.2422 41 1 3.8238 -2.6214 -2.2564 42 1 3.8896 -1.2994 -4.2450 43 1 1.5455 -1.7658 -1.1361 44 1 1.7555 -0.2615 -2.0649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601469601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:59 Heat of formation + Delta-G solvation = -94.805652 kcal Electronic energy + Delta-G solvation = -30253.295848 eV Core-core repulsion = 26297.309190 eV Total energy + Delta-G solvation = -3955.986658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.23384 -39.36957 -38.36311 -36.98265 -36.42628 -35.68118 -35.30109 -32.57788 -32.01334 -31.37923 -28.96161 -27.42237 -27.17646 -24.82320 -23.41394 -23.10825 -22.87344 -21.60982 -19.65301 -19.23177 -18.43858 -18.21777 -17.82519 -17.15311 -16.99760 -16.08258 -15.95595 -15.90650 -15.74293 -15.60252 -15.10873 -14.99499 -14.78006 -14.67946 -14.40521 -14.22801 -13.69137 -13.31848 -13.12559 -13.05751 -12.95987 -12.83348 -12.81409 -12.71036 -12.59149 -12.52929 -12.33493 -12.13258 -12.09179 -11.78821 -11.64564 -11.41506 -11.17487 -11.01499 -10.54816 -9.91823 -9.73091 -9.38850 -9.20962 -8.77287 -6.58472 -0.11054 0.55677 0.97642 1.35944 1.48336 1.52004 2.16693 2.27503 2.65066 2.96661 3.09257 3.43547 3.57051 3.75116 3.85021 3.94241 4.20171 4.23864 4.31063 4.35605 4.47365 4.50532 4.53122 4.65675 4.68611 4.71897 4.72520 4.78258 4.84057 4.99009 5.02073 5.06845 5.16879 5.17328 5.25301 5.31007 5.54364 5.69810 5.79991 5.90415 6.01360 6.05899 6.12139 6.16738 6.50134 6.71091 6.85520 7.12879 8.19176 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.006744 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.361530 B = 4150.774071 C = 5778.886641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.551 5.551 3 C 0.051 3.949 4 C 0.116 3.884 5 N -0.992 5.992 6 S 2.704 3.296 7 O -0.965 6.965 8 O -1.011 7.011 9 C -0.791 4.791 10 C -0.013 4.013 11 C -0.249 4.249 12 C -0.078 4.078 13 C -0.185 4.185 14 C 0.160 3.840 15 C -0.480 4.480 16 H 0.099 0.901 17 C 0.038 3.962 18 N -0.813 5.813 19 Si 0.968 3.032 20 H -0.248 1.248 21 H -0.268 1.268 22 H -0.248 1.248 23 C 0.162 3.838 24 H 0.091 0.909 25 C 0.037 3.963 26 O -0.545 6.545 27 C 0.062 3.938 28 H 0.023 0.977 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.029 0.971 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.293 0.707 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.384 0.616 43 H 0.103 0.897 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.279 -5.967 -0.716 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.275 5.275 3 C -0.079 4.079 4 C -0.009 4.009 5 N -0.830 5.830 6 S 2.802 3.198 7 O -0.955 6.955 8 O -1.001 7.001 9 C -0.884 4.884 10 C -0.033 4.033 11 C -0.269 4.269 12 C -0.096 4.096 13 C -0.205 4.205 14 C 0.156 3.844 15 C -0.508 4.508 16 H 0.117 0.883 17 C -0.179 4.179 18 N -0.437 5.437 19 Si 0.787 3.213 20 H -0.172 1.172 21 H -0.192 1.192 22 H -0.172 1.172 23 C 0.056 3.944 24 H 0.109 0.891 25 C -0.042 4.042 26 O -0.351 6.351 27 C -0.067 4.067 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.110 0.890 42 H 0.233 0.767 43 H 0.121 0.879 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.279 -5.080 -0.384 13.293 hybrid contribution 0.978 0.144 -0.165 1.002 sum -11.301 -4.936 -0.549 12.344 Atomic orbital electron populations 1.22415 0.85430 1.02833 1.01312 1.61896 1.09111 1.13123 1.43383 1.22433 0.93906 0.90188 1.01345 1.21617 0.93519 0.93978 0.91821 1.57674 1.49580 1.23449 1.52321 1.01042 0.72924 0.72677 0.73179 1.93555 1.83118 1.83527 1.35291 1.93429 1.85361 1.36925 1.84433 1.30361 1.27692 1.26112 1.04249 1.20513 0.94292 0.91870 0.96591 1.20897 1.00979 1.06947 0.98078 1.21240 0.97892 0.96471 0.94027 1.21548 1.00101 0.98721 1.00099 1.17348 0.90246 0.87924 0.88925 1.20343 0.97814 1.20580 1.12051 0.88349 1.26796 0.94864 0.96057 1.00163 1.69826 1.05912 1.34928 1.33057 0.85393 0.80071 0.78474 0.77396 1.17236 1.19205 1.17159 1.21240 0.93989 0.82188 0.97025 0.89072 1.22734 0.97949 0.97453 0.86070 1.86535 1.70194 1.62870 1.15542 1.22281 0.93217 0.99455 0.91759 0.95816 0.90143 0.90056 0.95250 0.87474 0.90027 0.90516 0.85601 0.85390 0.86138 0.87148 0.89584 0.93692 0.89028 0.76707 0.87917 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.62 127.69 1.23 1.73 16 2 N -0.55 -13.82 4.88 -921.49 -4.50 -18.31 16 3 C 0.05 1.40 5.62 86.38 0.49 1.89 16 4 C 0.12 4.04 4.81 86.35 0.42 4.46 16 5 N -0.99 -37.26 3.04 -489.92 -1.49 -38.75 16 6 S 2.70 122.19 4.41 -56.49 -0.25 121.94 16 7 O -0.96 -42.10 11.80 -118.17 -1.39 -43.49 16 8 O -1.01 -53.31 14.87 -128.00 -1.90 -55.22 16 9 C -0.79 -37.93 5.26 22.73 0.12 -37.81 16 10 C -0.01 -0.57 7.84 22.22 0.17 -0.39 16 11 C -0.25 -10.22 10.05 22.46 0.23 -9.99 16 12 C -0.08 -3.40 10.02 22.22 0.22 -3.17 16 13 C -0.18 -9.31 8.65 22.73 0.20 -9.11 16 14 C 0.16 8.35 5.54 -21.29 -0.12 8.23 16 15 C -0.48 -24.84 7.60 23.46 0.18 -24.66 16 16 H 0.10 4.79 3.59 -2.91 -0.01 4.78 16 17 C 0.04 1.90 5.25 85.26 0.45 2.35 16 18 N -0.81 -41.49 10.91 21.83 0.24 -41.25 16 19 Si 0.97 37.16 29.57 68.60 2.03 39.19 16 20 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 21 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 23 C 0.16 5.02 3.49 44.96 0.16 5.17 16 24 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 25 C 0.04 1.10 5.91 71.98 0.43 1.52 16 26 O -0.55 -16.78 9.09 -124.81 -1.13 -17.92 16 27 C 0.06 1.63 4.76 86.38 0.41 2.04 16 28 H 0.02 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.25 8.00 -2.39 -0.02 1.23 16 31 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.11 2.38 8.11 -2.38 -0.02 2.36 16 33 H 0.08 3.11 6.65 -2.39 -0.02 3.10 16 34 H 0.08 2.63 7.56 -2.39 -0.02 2.61 16 35 H 0.13 4.83 6.94 -2.91 -0.02 4.81 16 36 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.11 5.73 6.29 -2.91 -0.02 5.71 16 39 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 40 H 0.05 1.53 3.26 -2.39 -0.01 1.53 16 41 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.38 9.30 9.12 -74.05 -0.68 8.63 16 43 H 0.10 2.14 8.01 -2.39 -0.02 2.12 16 44 H 0.04 1.14 7.22 -2.39 -0.02 1.12 16 Total: -1.00 -67.32 344.19 -3.47 -70.78 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: 0.37 Total: 40.77 kcal Atomic # 6 Polarization: -62.31 SS G_CDS: 4.57 Total: -57.74 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -5.75 Total: -98.31 kcal Atomic # 8 Polarization: -112.19 SS G_CDS: -4.43 Total: -116.62 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 16 Polarization: 122.19 SS G_CDS: -0.25 Total: 121.94 kcal Total: -67.32 -3.47 -70.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.021 kcal (2) G-P(sol) polarization free energy of solvation -67.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds