Wall clock time and date at job start Sat Apr 11 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46502 * 119.99452 * 2 1 4 4 S 1.65598 * 120.00101 * 179.97438 * 2 1 3 5 5 O 1.42097 * 106.40326 * 336.46314 * 4 2 1 6 6 O 1.42094 * 106.39942 * 203.53861 * 4 2 1 7 7 N 1.65606 * 107.21607 * 90.00334 * 4 2 1 8 8 C 1.36936 * 119.99695 * 269.99983 * 7 4 2 9 9 H 1.08000 * 120.00261 * 313.90498 * 8 7 4 10 10 C 1.38810 * 120.00248 * 133.91078 * 8 7 4 11 11 N 1.31619 * 120.00389 * 168.26660 * 10 8 7 12 12 Si 1.86806 * 119.99640 * 348.26928 * 10 8 7 13 13 H 1.48496 * 109.46908 * 95.26857 * 12 10 8 14 14 H 1.48503 * 109.46866 * 215.26697 * 12 10 8 15 15 H 1.48500 * 109.47254 * 335.26340 * 12 10 8 16 16 C 1.46499 * 120.00286 * 89.99794 * 7 4 2 17 17 C 1.50696 * 109.46865 * 92.51588 * 16 7 4 18 18 C 1.38107 * 119.86653 * 263.65390 * 17 16 7 19 19 C 1.38221 * 119.86574 * 179.97438 * 18 17 16 20 20 C 1.38100 * 119.89365 * 0.09302 * 19 18 17 21 21 C 1.38598 * 120.30196 * 359.97438 * 20 19 18 22 22 C 1.37945 * 119.77771 * 359.83910 * 21 20 19 23 23 C 1.51209 * 121.42450 * 180.48583 * 22 21 20 24 24 C 1.52975 * 109.51050 * 343.03671 * 23 22 21 25 25 O 1.43216 * 108.64747 * 49.17856 * 24 23 22 26 26 C 1.42725 * 113.13772 * 289.21145 * 25 24 23 27 27 H 1.09003 * 109.46591 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46955 * 300.00026 * 1 2 3 29 29 H 1.09000 * 109.46965 * 60.00750 * 1 2 3 30 30 H 1.09000 * 109.46907 * 270.00000 * 3 2 1 31 31 H 1.08999 * 109.47554 * 29.99817 * 3 2 1 32 32 H 1.08996 * 109.46794 * 150.00175 * 3 2 1 33 33 H 0.96997 * 120.00176 * 179.97438 * 11 10 8 34 34 H 1.08997 * 109.46685 * 332.52032 * 16 7 4 35 35 H 1.08994 * 109.47268 * 212.51989 * 16 7 4 36 36 H 1.07995 * 120.07063 * 0.02562 * 18 17 16 37 37 H 1.07999 * 120.05875 * 180.11384 * 19 18 17 38 38 H 1.08007 * 119.85079 * 179.97438 * 20 19 18 39 39 H 1.08992 * 109.67741 * 222.94379 * 23 22 21 40 40 H 1.08999 * 109.41113 * 102.97014 * 23 22 21 41 41 H 1.08999 * 109.63723 * 289.37861 * 24 23 22 42 42 H 1.09002 * 109.63051 * 168.97151 * 24 23 22 43 43 H 1.09002 * 109.33648 * 172.01151 * 26 25 24 44 44 H 1.08995 * 109.34388 * 291.68690 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4115 -2.4063 0.5454 6 8 3.5760 -1.1564 0.5449 7 7 2.5383 -1.8592 -1.5810 8 6 1.6126 -2.6280 -2.2347 9 1 1.2054 -3.5064 -1.7563 10 6 1.1976 -2.2783 -3.5123 11 7 0.4928 -3.1266 -4.2307 12 14 1.6396 -0.6037 -4.2122 13 1 2.8710 -0.7199 -5.0338 14 1 0.5238 -0.1112 -5.0595 15 1 1.8749 0.3514 -3.0997 16 6 3.7454 -1.4129 -2.2809 17 6 4.8182 -2.4633 -2.1518 18 6 5.7776 -2.3488 -1.1650 19 6 6.7613 -3.3125 -1.0463 20 6 6.7824 -4.3853 -1.9157 21 6 5.8210 -4.5007 -2.9074 22 6 4.8373 -3.5406 -3.0229 23 6 3.7640 -3.6353 -4.0839 24 6 4.1992 -4.6276 -5.1637 25 8 4.6392 -5.8329 -4.5276 26 6 5.8806 -5.6829 -3.8394 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 2.3791 1.5835 -1.0277 31 1 1.6084 2.0285 0.5138 32 1 3.1499 1.1385 0.5138 33 1 0.2026 -2.8821 -5.1233 34 1 4.0961 -0.4794 -1.8410 35 1 3.5168 -1.2546 -3.3348 36 1 5.7589 -1.5084 -0.4870 37 1 7.5120 -3.2271 -0.2746 38 1 7.5516 -5.1377 -1.8226 39 1 3.6060 -2.6555 -4.5344 40 1 2.8347 -3.9785 -3.6294 41 1 5.0165 -4.2010 -5.7453 42 1 3.3574 -4.8464 -5.8207 43 1 6.0859 -6.5859 -3.2644 44 1 6.6791 -5.5277 -4.5649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601927138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:10 Heat of formation + Delta-G solvation = -73.439073 kcal Electronic energy + Delta-G solvation = -30142.200772 eV Core-core repulsion = 26187.140638 eV Total energy + Delta-G solvation = -3955.060134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.94888 -37.37352 -36.21187 -35.98768 -35.37901 -34.73786 -32.46747 -32.20722 -31.17554 -29.25940 -27.58983 -25.98677 -25.10682 -24.20908 -23.83242 -23.20088 -20.62083 -19.59419 -18.47778 -17.43029 -17.10689 -16.53763 -16.24231 -16.01037 -15.71516 -15.25716 -14.99805 -14.81883 -14.21607 -14.12458 -13.64587 -13.62049 -13.35184 -12.88817 -12.85211 -12.58810 -12.41229 -12.34138 -12.15212 -12.05113 -11.84423 -11.76657 -11.42646 -11.26028 -11.07790 -11.02005 -10.80636 -10.77900 -10.71125 -10.46642 -10.29546 -10.13541 -10.08708 -9.24383 -9.00571 -8.47529 -8.22516 -8.13113 -7.94774 -6.59671 -4.25020 1.52146 1.83795 1.91245 2.90867 3.09618 3.10034 3.81946 3.96462 4.13283 4.28586 4.57336 4.71525 5.06420 5.18354 5.27920 5.30935 5.39956 5.44057 5.58910 5.59675 5.65214 5.68895 5.72933 5.75283 5.83406 5.89999 5.94754 6.00264 6.05425 6.15074 6.25295 6.28531 6.37323 6.46390 6.52054 6.55929 6.84757 6.91846 6.97715 7.17191 7.24286 7.28956 7.47390 7.48433 7.55645 8.26680 8.91083 8.96961 10.46327 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.006447 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.604417 B = 4341.790662 C = 5580.720934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.022 6.022 3 C 0.090 3.910 4 S 2.703 3.297 5 O -0.983 6.983 6 O -1.011 7.011 7 N -0.849 5.849 8 C -0.283 4.283 9 H 0.114 0.886 10 C 0.074 3.926 11 N -0.842 5.842 12 Si 0.869 3.131 13 H -0.271 1.271 14 H -0.287 1.287 15 H -0.256 1.256 16 C 0.159 3.841 17 C -0.094 4.094 18 C -0.095 4.095 19 C -0.137 4.137 20 C -0.114 4.114 21 C -0.140 4.140 22 C -0.031 4.031 23 C -0.130 4.130 24 C 0.062 3.938 25 O -0.375 6.375 26 C 0.108 3.892 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.278 0.722 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.141 0.859 41 H 0.041 0.959 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.414 4.328 -0.656 8.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.858 5.858 3 C -0.057 4.057 4 S 2.725 3.275 5 O -0.967 6.967 6 O -0.995 6.995 7 N -0.679 5.679 8 C -0.423 4.423 9 H 0.132 0.868 10 C -0.138 4.138 11 N -0.478 5.478 12 Si 0.697 3.303 13 H -0.198 1.198 14 H -0.214 1.214 15 H -0.180 1.180 16 C 0.032 3.968 17 C -0.097 4.097 18 C -0.114 4.114 19 C -0.155 4.155 20 C -0.133 4.133 21 C -0.141 4.141 22 C -0.032 4.032 23 C -0.166 4.166 24 C -0.014 4.014 25 O -0.293 6.293 26 C 0.031 3.969 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.150 0.850 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.095 0.905 40 H 0.159 0.841 41 H 0.059 0.941 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.473 3.763 0.148 8.368 hybrid contribution 0.130 1.522 -0.719 1.688 sum 7.603 5.284 -0.571 9.276 Atomic orbital electron populations 1.21361 0.79846 1.03642 1.00117 1.58504 1.14733 1.22363 1.90158 1.21368 0.96926 0.86493 1.00897 1.06491 0.72473 0.72834 0.75750 1.93458 1.66546 1.58708 1.78028 1.93395 1.41527 1.85388 1.79204 1.53635 1.23109 1.59464 1.31692 1.19009 1.17909 1.05903 0.99512 0.86847 1.25709 0.94302 0.96814 0.97026 1.69783 1.33133 1.34358 1.10575 0.87092 0.77842 0.85548 0.79846 1.19786 1.21371 1.17998 1.20280 0.84082 0.94032 0.98364 1.20169 0.96156 0.97273 0.96060 1.21250 0.93765 0.99555 0.96822 1.20944 0.99567 0.95314 0.99719 1.20833 0.98494 0.98380 0.95589 1.20147 0.97039 0.97799 0.99068 1.19554 0.94311 0.92706 0.96625 1.21763 1.00233 0.99862 0.94748 1.22670 0.98698 0.85522 0.94541 1.88051 1.38324 1.33503 1.69471 1.21287 0.86705 0.96029 0.92872 0.89494 0.93679 0.93304 0.93835 0.92164 0.90728 0.91148 0.91190 0.91197 0.84954 0.86522 0.86688 0.90542 0.84109 0.94080 0.88492 0.88500 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.65 10.67 59.85 0.64 2.28 16 2 N -1.02 -19.26 3.64 -129.20 -0.47 -19.73 16 3 C 0.09 1.38 10.70 59.85 0.64 2.02 16 4 S 2.70 60.19 6.02 -107.50 -0.65 59.54 16 5 O -0.98 -24.99 15.76 -57.17 -0.90 -25.89 16 6 O -1.01 -22.56 14.14 -57.17 -0.81 -23.36 16 7 N -0.85 -19.06 2.40 -61.09 -0.15 -19.20 16 8 C -0.28 -6.91 7.39 -15.06 -0.11 -7.02 16 9 H 0.11 3.15 7.82 -52.49 -0.41 2.74 16 10 C 0.07 1.74 3.32 -17.43 -0.06 1.69 16 11 N -0.84 -20.72 13.73 55.49 0.76 -19.96 16 12 Si 0.87 18.21 23.75 -169.99 -4.04 14.17 16 13 H -0.27 -5.41 6.36 56.52 0.36 -5.05 16 14 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.26 -5.16 7.01 56.52 0.40 -4.77 16 16 C 0.16 3.23 3.75 -5.20 -0.02 3.21 16 17 C -0.09 -1.89 5.46 -104.55 -0.57 -2.46 16 18 C -0.10 -1.76 9.07 -39.64 -0.36 -2.12 16 19 C -0.14 -2.23 10.05 -39.64 -0.40 -2.63 16 20 C -0.11 -1.79 9.67 -39.50 -0.38 -2.17 16 21 C -0.14 -2.45 5.80 -104.61 -0.61 -3.06 16 22 C -0.03 -0.62 5.79 -104.36 -0.60 -1.22 16 23 C -0.13 -2.60 3.89 -27.65 -0.11 -2.71 16 24 C 0.06 1.08 6.83 37.14 0.25 1.33 16 25 O -0.38 -6.76 10.80 -35.23 -0.38 -7.14 16 26 C 0.11 1.65 6.66 35.99 0.24 1.89 16 27 H 0.09 1.63 6.91 -51.93 -0.36 1.27 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 32 H 0.07 1.14 7.02 -51.93 -0.36 0.77 16 33 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 34 H 0.07 1.28 7.59 -51.93 -0.39 0.89 16 35 H 0.07 1.42 2.10 -51.93 -0.11 1.31 16 36 H 0.13 2.42 7.06 -52.49 -0.37 2.05 16 37 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 39 H 0.08 1.54 4.58 -51.93 -0.24 1.30 16 40 H 0.14 3.28 5.09 -51.93 -0.26 3.02 16 41 H 0.04 0.63 8.07 -51.93 -0.42 0.21 16 42 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -28.83 347.35 -8.75 -37.58 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.91 Total: 9.72 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -1.44 Total: -10.97 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.14 Total: -58.89 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -2.09 Total: -56.40 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -4.04 Total: 14.17 kcal Atomic # 16 Polarization: 60.19 SS G_CDS: -0.65 Total: 59.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.83 -8.75 -37.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601927138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.854 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds