Wall clock time and date at job start Sat Apr 11 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35994 * 117.00045 * 2 1 4 4 C 1.38556 * 120.06586 * 0.02562 * 3 2 1 5 5 C 1.38340 * 119.98990 * 179.97438 * 4 3 2 6 6 Cl 1.73595 * 119.94125 * 179.97438 * 5 4 3 7 7 C 1.38355 * 120.11782 * 0.02562 * 5 4 3 8 8 C 1.50702 * 119.93374 * 179.97438 * 7 5 4 9 9 N 1.46899 * 109.47342 * 285.00008 * 8 7 5 10 10 C 1.46895 * 110.99989 * 190.00093 * 9 8 7 11 11 C 1.53241 * 109.33538 * 187.25118 * 10 9 8 12 12 N 1.47082 * 108.52509 * 306.16899 * 11 10 9 13 13 C 1.36935 * 120.87800 * 231.18634 * 12 11 10 14 14 H 1.07994 * 120.00243 * 27.12925 * 13 12 11 15 15 C 1.38815 * 119.99552 * 206.84012 * 13 12 11 16 16 N 1.31614 * 119.99986 * 17.18837 * 15 13 12 17 17 Si 1.86797 * 120.00057 * 197.17547 * 15 13 12 18 18 H 1.48508 * 109.47149 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47196 * 120.00464 * 17 15 13 20 20 H 1.48497 * 109.47565 * 240.00842 * 17 15 13 21 21 C 1.47072 * 118.23374 * 51.45730 * 12 11 10 22 22 C 1.46908 * 110.99894 * 314.30181 * 9 8 7 23 23 C 1.38240 * 120.13343 * 0.25152 * 7 5 4 24 24 C 1.38551 * 120.01252 * 359.45805 * 23 7 5 25 25 O 1.36021 * 120.06396 * 180.27560 * 24 23 7 26 26 C 1.42900 * 116.99793 * 0.28621 * 25 24 23 27 27 H 1.09001 * 109.47102 * 299.99429 * 1 2 3 28 28 H 1.08995 * 109.47593 * 60.00051 * 1 2 3 29 29 H 1.09008 * 109.47229 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00657 * 359.94913 * 4 3 2 31 31 H 1.09004 * 109.46889 * 164.99703 * 8 7 5 32 32 H 1.08999 * 109.46899 * 44.99931 * 8 7 5 33 33 H 1.08994 * 109.49506 * 67.29451 * 10 9 8 34 34 H 1.08994 * 109.51398 * 307.22151 * 10 9 8 35 35 H 1.09003 * 109.62622 * 186.45689 * 11 10 9 36 36 H 1.09001 * 109.79122 * 65.97420 * 11 10 9 37 37 H 0.97002 * 120.00194 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.62781 * 68.25550 * 21 12 11 39 39 H 1.09007 * 109.62956 * 188.83247 * 21 12 11 40 40 H 1.09005 * 109.49135 * 292.70628 * 22 9 8 41 41 H 1.09003 * 109.49306 * 52.75396 * 22 9 8 42 42 H 1.08006 * 119.99401 * 179.72869 * 23 7 5 43 43 H 1.09000 * 109.46994 * 300.00303 * 26 25 24 44 44 H 1.09006 * 109.46952 * 60.00630 * 26 25 24 45 45 H 1.09004 * 109.47121 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2930 2.3746 0.0005 5 6 1.9227 3.6064 0.0011 6 17 0.9777 5.0626 0.0011 7 6 3.3043 3.6798 0.0005 8 6 3.9860 5.0239 0.0005 9 7 3.8873 5.6230 -1.3371 10 6 4.7370 6.8165 -1.4433 11 6 4.4699 7.5120 -2.7824 12 7 4.6415 6.5282 -3.8623 13 6 5.4455 6.7979 -4.9374 14 1 6.2745 7.4822 -4.8336 15 6 5.1985 6.1871 -6.1593 16 7 4.0296 5.6286 -6.3914 17 14 6.5251 6.1580 -7.4740 18 1 7.7386 6.8487 -6.9682 19 1 6.8602 4.7504 -7.8081 20 1 6.0315 6.8515 -8.6908 21 6 3.9217 5.2498 -3.7596 22 6 4.2150 4.6409 -2.3793 23 6 4.0608 2.5227 -0.0058 24 6 3.4358 1.2862 -0.0002 25 8 4.1792 0.1470 -0.0008 26 6 5.6000 0.2996 -0.0009 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2144 2.3195 0.0001 31 1 5.0357 4.8988 0.2661 32 1 3.5025 5.6764 0.7275 33 1 5.7852 6.5227 -1.3888 34 1 4.5080 7.5004 -0.6262 35 1 5.1768 8.3307 -2.9172 36 1 3.4518 7.9008 -2.7997 37 1 3.8571 5.2014 -7.2451 38 1 2.8509 5.4228 -3.8669 39 1 4.2660 4.5720 -4.5409 40 1 5.2706 4.3774 -2.3117 41 1 3.6073 3.7467 -2.2405 42 1 5.1392 2.5827 -0.0106 43 1 5.9063 0.8497 -0.8906 44 1 5.9065 0.8488 0.8894 45 1 6.0710 -0.6835 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602454071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:16 Heat of formation + Delta-G solvation = -11.882223 kcal Electronic energy + Delta-G solvation = -28303.356245 eV Core-core repulsion = 24348.921710 eV Total energy + Delta-G solvation = -3954.434535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.79355 -38.64672 -38.45301 -37.08461 -35.88940 -34.32687 -31.81582 -30.40828 -30.22807 -29.82603 -28.00927 -27.39412 -26.49835 -24.46478 -22.70493 -22.43705 -22.32038 -21.03844 -19.04623 -18.55337 -17.24897 -17.11373 -16.64939 -16.24784 -15.39318 -15.23825 -15.17741 -14.88197 -14.67192 -14.45760 -14.29255 -13.61885 -13.50473 -13.32030 -13.21319 -12.85114 -12.82893 -12.43817 -12.15702 -12.01039 -11.63550 -11.49809 -11.42475 -11.34424 -11.28027 -11.02362 -10.74018 -10.64207 -10.40186 -10.39180 -10.23490 -10.00851 -9.70311 -9.54875 -8.79169 -8.47154 -7.87149 -7.67070 -6.61857 -5.74371 -3.15483 1.06463 1.18478 2.30970 3.09410 3.12767 3.38430 3.44369 3.46270 3.48327 4.44505 4.52903 4.63368 4.70300 4.83783 4.93724 5.00181 5.04456 5.06299 5.13825 5.31438 5.37368 5.39234 5.42521 5.50367 5.55351 5.59575 5.80120 5.93910 5.95134 6.00099 6.19402 6.28636 6.32347 6.36507 6.40960 6.59257 6.76242 6.86135 6.98893 7.30411 7.38230 7.63630 7.71706 7.75887 7.86525 8.47452 9.25183 9.88946 10.47924 11.34195 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.003604 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.540929 B = 7768.342950 C = 8539.030259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.304 6.304 3 C 0.107 3.893 4 C -0.167 4.167 5 C -0.010 4.010 6 Cl -0.048 7.048 7 C -0.061 4.061 8 C 0.094 3.906 9 N -0.518 5.518 10 C 0.046 3.954 11 C 0.150 3.850 12 N -0.595 5.595 13 C -0.251 4.251 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.902 5.902 17 Si 0.900 3.100 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.181 3.819 22 C 0.036 3.964 23 C -0.155 4.155 24 C 0.103 3.897 25 O -0.305 6.305 26 C 0.025 3.975 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.144 0.856 31 H 0.036 0.964 32 H 0.083 0.917 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.026 0.974 37 H 0.253 0.747 38 H 0.026 0.974 39 H 0.086 0.914 40 H 0.021 0.979 41 H 0.061 0.939 42 H 0.141 0.859 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.877 -9.619 17.572 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.061 3.939 4 C -0.187 4.187 5 C -0.038 4.038 6 Cl -0.019 7.019 7 C -0.062 4.062 8 C -0.034 4.034 9 N -0.243 5.243 10 C -0.083 4.083 11 C 0.023 3.977 12 N -0.319 5.319 13 C -0.380 4.380 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.730 3.270 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.055 3.945 22 C -0.093 4.093 23 C -0.175 4.175 24 C 0.057 3.943 25 O -0.218 6.218 26 C -0.070 4.070 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.162 0.838 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.104 0.896 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.158 0.842 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.456 -9.787 17.326 20.392 hybrid contribution 1.339 0.058 -0.662 1.495 sum -3.117 -9.729 16.665 19.547 Atomic orbital electron populations 1.23100 0.78475 1.04018 1.01488 1.86176 1.21102 1.25391 1.89030 1.17977 0.88920 0.84883 1.02125 1.20863 1.00445 0.89857 1.07528 1.20287 0.91210 0.87676 1.04617 1.98377 1.71559 1.35368 1.96605 1.19379 0.91520 0.95458 0.99886 1.21075 0.97429 0.91129 0.93767 1.62124 1.54486 1.06969 1.00723 1.22618 0.93863 0.92023 0.99838 1.20951 0.98346 0.91683 0.86692 1.44151 1.54149 1.12659 1.20912 1.19226 1.05273 1.25781 0.87751 0.91685 1.25011 0.96124 1.01787 0.96769 1.70043 1.20010 1.41265 1.23367 0.86263 0.81572 0.77355 0.81836 1.20343 1.21639 1.21725 1.20917 0.95029 0.87645 0.90898 1.22999 0.97339 0.94246 0.94686 1.20917 1.00415 0.90035 1.06134 1.18182 0.88206 0.86067 1.01816 1.86164 1.18764 1.27970 1.88945 1.23103 0.78488 1.03922 1.01531 0.92672 0.92385 0.88155 0.83849 0.94598 0.89839 0.95496 0.92001 0.92744 0.95652 0.93719 0.95581 0.89620 0.96088 0.92102 0.84173 0.92311 0.92719 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.30 -3.87 10.28 -34.24 -0.35 -4.22 16 3 C 0.11 1.45 6.70 -39.12 -0.26 1.19 16 4 C -0.17 -2.14 8.82 -39.43 -0.35 -2.49 16 5 C -0.01 -0.14 6.31 -39.50 -0.25 -0.39 16 6 Cl -0.05 -0.68 27.52 -51.86 -1.43 -2.11 16 7 C -0.06 -0.86 3.48 -104.58 -0.36 -1.23 16 8 C 0.09 1.36 4.73 -4.98 -0.02 1.33 16 9 N -0.52 -9.21 4.66 -235.47 -1.10 -10.31 16 10 C 0.05 0.82 5.58 -3.70 -0.02 0.80 16 11 C 0.15 3.23 6.69 -3.60 -0.02 3.20 16 12 N -0.60 -15.29 3.03 -171.74 -0.52 -15.81 16 13 C -0.25 -6.98 9.63 -15.06 -0.15 -7.12 16 14 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 15 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 16 N -0.90 -26.62 11.16 55.49 0.62 -26.00 16 17 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 C 0.18 4.49 5.45 -3.37 -0.02 4.47 16 22 C 0.04 0.73 5.12 -3.46 -0.02 0.71 16 23 C -0.16 -2.05 7.99 -39.46 -0.32 -2.37 16 24 C 0.10 1.42 6.70 -39.13 -0.26 1.16 16 25 O -0.30 -4.02 10.28 -34.33 -0.35 -4.38 16 26 C 0.02 0.23 9.81 101.05 0.99 1.22 16 27 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 28 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.14 1.51 6.30 -52.49 -0.33 1.18 16 31 H 0.04 0.49 7.89 -51.93 -0.41 0.08 16 32 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 35 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.19 6.10 -51.93 -0.32 0.87 16 42 H 0.14 1.62 6.24 -52.48 -0.33 1.29 16 43 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 44 H 0.05 0.43 7.68 -51.93 -0.40 0.03 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -32.13 371.58 -9.32 -41.45 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.61 Total: -2.70 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.15 Total: 1.63 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -1.00 Total: -52.12 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.70 Total: -8.60 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.43 Total: -2.11 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.13 -9.32 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602454071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.565 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds