Wall clock time and date at job start Sat Apr 11 2020 05:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35994 * 117.00045 * 2 1 4 4 C 1.38556 * 120.06586 * 0.02562 * 3 2 1 5 5 C 1.38340 * 119.98990 * 179.97438 * 4 3 2 6 6 Cl 1.73595 * 119.94125 * 179.97438 * 5 4 3 7 7 C 1.38355 * 120.11782 * 0.02562 * 5 4 3 8 8 C 1.50702 * 119.93374 * 179.97438 * 7 5 4 9 9 N 1.46899 * 109.47342 * 285.00008 * 8 7 5 10 10 C 1.46895 * 110.99989 * 190.00093 * 9 8 7 11 11 C 1.53241 * 109.33538 * 187.25118 * 10 9 8 12 12 N 1.47082 * 108.52509 * 306.16899 * 11 10 9 13 13 C 1.36935 * 120.87800 * 231.18634 * 12 11 10 14 14 H 1.07994 * 120.00243 * 27.12925 * 13 12 11 15 15 C 1.38815 * 119.99552 * 206.84012 * 13 12 11 16 16 N 1.31614 * 119.99986 * 17.18837 * 15 13 12 17 17 Si 1.86797 * 120.00057 * 197.17547 * 15 13 12 18 18 H 1.48508 * 109.47149 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47196 * 120.00464 * 17 15 13 20 20 H 1.48497 * 109.47565 * 240.00842 * 17 15 13 21 21 C 1.47072 * 118.23374 * 51.45730 * 12 11 10 22 22 C 1.46908 * 110.99894 * 314.30181 * 9 8 7 23 23 C 1.38240 * 120.13343 * 0.25152 * 7 5 4 24 24 C 1.38551 * 120.01252 * 359.45805 * 23 7 5 25 25 O 1.36021 * 120.06396 * 180.27560 * 24 23 7 26 26 C 1.42900 * 116.99793 * 0.28621 * 25 24 23 27 27 H 1.09001 * 109.47102 * 299.99429 * 1 2 3 28 28 H 1.08995 * 109.47593 * 60.00051 * 1 2 3 29 29 H 1.09008 * 109.47229 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00657 * 359.94913 * 4 3 2 31 31 H 1.09004 * 109.46889 * 164.99703 * 8 7 5 32 32 H 1.08999 * 109.46899 * 44.99931 * 8 7 5 33 33 H 1.08994 * 109.49506 * 67.29451 * 10 9 8 34 34 H 1.08994 * 109.51398 * 307.22151 * 10 9 8 35 35 H 1.09003 * 109.62622 * 186.45689 * 11 10 9 36 36 H 1.09001 * 109.79122 * 65.97420 * 11 10 9 37 37 H 0.97002 * 120.00194 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.62781 * 68.25550 * 21 12 11 39 39 H 1.09007 * 109.62956 * 188.83247 * 21 12 11 40 40 H 1.09005 * 109.49135 * 292.70628 * 22 9 8 41 41 H 1.09003 * 109.49306 * 52.75396 * 22 9 8 42 42 H 1.08006 * 119.99401 * 179.72869 * 23 7 5 43 43 H 1.09000 * 109.46994 * 300.00303 * 26 25 24 44 44 H 1.09006 * 109.46952 * 60.00630 * 26 25 24 45 45 H 1.09004 * 109.47121 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2930 2.3746 0.0005 5 6 1.9227 3.6064 0.0011 6 17 0.9777 5.0626 0.0011 7 6 3.3043 3.6798 0.0005 8 6 3.9860 5.0239 0.0005 9 7 3.8873 5.6230 -1.3371 10 6 4.7370 6.8165 -1.4433 11 6 4.4699 7.5120 -2.7824 12 7 4.6415 6.5282 -3.8623 13 6 5.4455 6.7979 -4.9374 14 1 6.2745 7.4822 -4.8336 15 6 5.1985 6.1871 -6.1593 16 7 4.0296 5.6286 -6.3914 17 14 6.5251 6.1580 -7.4740 18 1 7.7386 6.8487 -6.9682 19 1 6.8602 4.7504 -7.8081 20 1 6.0315 6.8515 -8.6908 21 6 3.9217 5.2498 -3.7596 22 6 4.2150 4.6409 -2.3793 23 6 4.0608 2.5227 -0.0058 24 6 3.4358 1.2862 -0.0002 25 8 4.1792 0.1470 -0.0008 26 6 5.6000 0.2996 -0.0009 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2144 2.3195 0.0001 31 1 5.0357 4.8988 0.2661 32 1 3.5025 5.6764 0.7275 33 1 5.7852 6.5227 -1.3888 34 1 4.5080 7.5004 -0.6262 35 1 5.1768 8.3307 -2.9172 36 1 3.4518 7.9008 -2.7997 37 1 3.8571 5.2014 -7.2451 38 1 2.8509 5.4228 -3.8669 39 1 4.2660 4.5720 -4.5409 40 1 5.2706 4.3774 -2.3117 41 1 3.6073 3.7467 -2.2405 42 1 5.1392 2.5827 -0.0106 43 1 5.9063 0.8497 -0.8906 44 1 5.9065 0.8488 0.8894 45 1 6.0710 -0.6835 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602454071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:15 Heat of formation + Delta-G solvation = -32.099429 kcal Electronic energy + Delta-G solvation = -28304.232929 eV Core-core repulsion = 24348.921710 eV Total energy + Delta-G solvation = -3955.311219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.76738 -39.89008 -39.46665 -38.34152 -37.00338 -35.99271 -33.52000 -31.80665 -31.54342 -31.20857 -29.17431 -28.11148 -27.87685 -26.00077 -24.29001 -24.10566 -23.30876 -22.20500 -20.77170 -19.51231 -18.72219 -18.13944 -18.02193 -17.22301 -16.95785 -16.30239 -16.18751 -16.14626 -15.99541 -15.66248 -15.44635 -15.30851 -15.02998 -14.85639 -14.66168 -14.28545 -13.98780 -13.41361 -13.22612 -13.12218 -13.00585 -12.92640 -12.74437 -12.63482 -12.38730 -12.30916 -12.23553 -12.10742 -12.03623 -11.90912 -11.67464 -11.59779 -11.38735 -11.30213 -10.58764 -9.79035 -9.19566 -8.80884 -8.65050 -7.86449 -5.31341 0.07034 0.14333 1.25019 1.45600 1.47072 1.57874 2.26127 2.27001 2.41470 2.51273 3.13467 3.29515 3.57044 3.68931 3.71267 3.97379 4.04808 4.26689 4.33270 4.35169 4.37681 4.38388 4.39967 4.43558 4.49588 4.52120 4.65551 4.67179 4.71088 4.73041 4.75332 4.86545 4.91249 4.93265 5.07882 5.22363 5.27965 5.38372 5.40039 5.62503 5.69214 6.00130 6.21482 6.27996 6.38776 6.47994 7.14092 7.85377 8.40080 9.20340 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.003604 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.540929 B = 7768.342950 C = 8539.030259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.099 3.901 4 C -0.167 4.167 5 C -0.022 4.022 6 Cl -0.054 7.054 7 C -0.075 4.075 8 C 0.099 3.901 9 N -0.527 5.527 10 C 0.057 3.943 11 C 0.145 3.855 12 N -0.613 5.613 13 C -0.262 4.262 14 H 0.069 0.931 15 C -0.051 4.051 16 N -0.937 5.937 17 Si 0.966 3.034 18 H -0.265 1.265 19 H -0.290 1.290 20 H -0.292 1.292 21 C 0.191 3.809 22 C 0.061 3.939 23 C -0.153 4.153 24 C 0.091 3.909 25 O -0.323 6.323 26 C 0.017 3.983 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.122 0.878 30 H 0.162 0.838 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.028 0.972 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.013 0.987 37 H 0.249 0.751 38 H -0.008 1.008 39 H 0.052 0.948 40 H 0.019 0.981 41 H 0.065 0.935 42 H 0.156 0.844 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 -9.910 19.181 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.053 3.947 4 C -0.186 4.186 5 C -0.049 4.049 6 Cl -0.025 7.025 7 C -0.077 4.077 8 C -0.028 4.028 9 N -0.252 5.252 10 C -0.072 4.072 11 C 0.020 3.980 12 N -0.337 5.337 13 C -0.392 4.392 14 H 0.087 0.913 15 C -0.246 4.246 16 N -0.583 5.583 17 Si 0.795 3.205 18 H -0.189 1.189 19 H -0.217 1.217 20 H -0.220 1.220 21 C 0.065 3.935 22 C -0.068 4.068 23 C -0.173 4.173 24 C 0.045 3.955 25 O -0.237 6.237 26 C -0.078 4.078 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.179 0.821 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.058 0.942 38 H 0.011 0.989 39 H 0.070 0.930 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.173 0.827 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.506 -10.065 18.977 21.765 hybrid contribution 0.979 0.116 -1.115 1.488 sum -2.527 -9.949 17.862 20.601 Atomic orbital electron populations 1.23405 0.76378 1.05835 1.02318 1.86156 1.23354 1.25157 1.88877 1.18198 0.89284 0.85402 1.01828 1.21029 1.01415 0.89255 1.06889 1.20443 0.91396 0.87871 1.05207 1.98371 1.71707 1.35729 1.96685 1.19425 0.91665 0.95576 1.01006 1.21077 0.98672 0.91405 0.91596 1.62009 1.54609 1.06649 1.01917 1.22465 0.93933 0.92345 0.98449 1.21113 0.97801 0.91610 0.87505 1.44427 1.53985 1.13836 1.21462 1.19581 1.05595 1.25466 0.88547 0.91324 1.25786 0.97993 1.01918 0.98945 1.70210 1.21938 1.42460 1.23713 0.85221 0.79335 0.77097 0.78886 1.18929 1.21721 1.21960 1.20622 0.92711 0.87250 0.92908 1.22540 0.97123 0.94401 0.92743 1.21048 1.01138 0.89569 1.05524 1.18410 0.88675 0.86495 1.01872 1.86144 1.20589 1.28042 1.88877 1.23370 0.76681 1.05576 1.02126 0.91216 0.92107 0.85977 0.82061 0.92930 0.88549 0.95331 0.88577 0.92068 0.96903 0.94183 0.98942 0.93006 0.96266 0.91643 0.82682 0.92577 0.91153 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.88 10.28 -79.60 -0.82 -8.69 16 3 C 0.10 2.60 6.70 22.57 0.15 2.75 16 4 C -0.17 -4.08 8.82 22.37 0.20 -3.88 16 5 C -0.02 -0.58 6.31 22.32 0.14 -0.44 16 6 Cl -0.05 -1.47 27.52 -2.72 -0.07 -1.55 16 7 C -0.08 -2.01 3.48 -19.84 -0.07 -2.08 16 8 C 0.10 2.63 4.73 85.56 0.40 3.03 16 9 N -0.53 -17.89 4.66 -898.88 -4.19 -22.08 16 10 C 0.06 1.91 5.58 86.38 0.48 2.39 16 11 C 0.15 6.16 6.69 86.35 0.58 6.74 16 12 N -0.61 -31.82 3.03 -697.26 -2.11 -33.93 16 13 C -0.26 -14.67 9.63 84.03 0.81 -13.86 16 14 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 15 C -0.05 -2.92 4.93 84.86 0.42 -2.50 16 16 N -0.94 -56.92 11.16 21.65 0.24 -56.68 16 17 Si 0.97 45.43 29.59 68.60 2.03 47.46 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 C 0.19 9.74 5.45 86.50 0.47 10.21 16 22 C 0.06 2.43 5.12 86.53 0.44 2.87 16 23 C -0.15 -3.81 7.99 22.35 0.18 -3.63 16 24 C 0.09 2.42 6.70 22.56 0.15 2.57 16 25 O -0.32 -8.16 10.28 -79.91 -0.82 -8.98 16 26 C 0.02 0.28 9.81 113.37 1.11 1.39 16 27 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 28 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 29 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.16 3.18 6.30 -2.91 -0.02 3.16 16 31 H 0.05 1.25 7.89 -2.38 -0.02 1.23 16 32 H 0.10 2.34 7.58 -2.39 -0.02 2.32 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 34 H 0.10 2.61 8.11 -2.39 -0.02 2.59 16 35 H 0.06 2.46 7.95 -2.39 -0.02 2.45 16 36 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.05 2.97 6.12 -2.38 -0.01 2.95 16 40 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.07 2.54 6.10 -2.39 -0.01 2.52 16 42 H 0.16 3.25 6.24 -2.91 -0.02 3.23 16 43 H 0.06 0.96 7.65 -2.39 -0.02 0.95 16 44 H 0.07 0.95 7.68 -2.38 -0.02 0.93 16 45 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -70.31 371.58 1.83 -68.48 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.00 Total: 9.06 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 6.58 Total: 6.91 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -6.06 Total: -112.69 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -1.64 Total: -17.67 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.07 Total: -1.55 kcal Total: -70.31 1.83 -68.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602454071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.384 kcal (2) G-P(sol) polarization free energy of solvation -70.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds