Wall clock time and date at job start Sat Apr 11 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36016 * 117.00060 * 2 1 4 4 C 1.38559 * 120.05652 * 359.97438 * 3 2 1 5 5 C 1.38245 * 120.00728 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.93201 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47063 * 104.99888 * 6 5 4 8 8 C 1.46904 * 111.00240 * 180.02562 * 7 6 5 9 9 C 1.53051 * 109.45502 * 275.06997 * 8 7 6 10 10 C 1.53191 * 109.30827 * 178.61211 * 9 8 7 11 11 N 1.46926 * 108.77860 * 54.63431 * 10 9 8 12 12 C 1.36934 * 120.63060 * 126.40910 * 11 10 9 13 13 H 1.07997 * 120.00587 * 332.61013 * 12 11 10 14 14 C 1.38824 * 119.99904 * 152.61309 * 12 11 10 15 15 N 1.31617 * 119.99762 * 159.34692 * 14 12 11 16 16 Si 1.86798 * 119.99817 * 339.34288 * 14 12 11 17 17 H 1.48503 * 109.47034 * 92.94537 * 16 14 12 18 18 H 1.48496 * 109.47334 * 212.94614 * 16 14 12 19 19 H 1.48505 * 109.47256 * 332.94757 * 16 14 12 20 20 C 1.46927 * 118.73690 * 306.39415 * 11 10 9 21 21 C 1.53040 * 109.46367 * 155.00298 * 8 7 6 22 22 C 1.38357 * 120.13613 * 0.02562 * 5 4 3 23 23 Cl 1.73601 * 119.94134 * 180.02562 * 22 5 4 24 24 C 1.38333 * 120.11925 * 359.97438 * 22 5 4 25 25 C 1.38562 * 119.98973 * 0.02562 * 24 22 5 26 26 O 1.35989 * 120.07194 * 180.02562 * 25 24 22 27 27 H 1.09003 * 109.47225 * 300.00314 * 1 2 3 28 28 H 1.09006 * 109.47275 * 59.99997 * 1 2 3 29 29 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.00059 * 359.97438 * 4 3 2 31 31 H 1.08996 * 109.47138 * 224.99865 * 6 5 4 32 32 H 1.09003 * 109.47118 * 344.99914 * 6 5 4 33 33 H 1.00904 * 111.00164 * 56.05189 * 7 6 5 34 34 H 1.09002 * 109.45994 * 35.02391 * 8 7 6 35 35 H 1.08991 * 109.49682 * 298.56121 * 9 8 7 36 36 H 1.08999 * 109.49721 * 58.66191 * 9 8 7 37 37 H 1.09005 * 109.59023 * 294.84880 * 10 9 8 38 38 H 1.09001 * 109.70210 * 174.49053 * 10 9 8 39 39 H 0.97002 * 119.99581 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.58889 * 293.81326 * 20 11 10 41 41 H 1.09003 * 109.69986 * 173.46647 * 20 11 10 42 42 H 1.08997 * 109.49343 * 301.33407 * 21 8 7 43 43 H 1.08997 * 109.49638 * 61.43191 * 21 8 7 44 44 H 1.07999 * 120.00995 * 180.27881 * 24 22 5 45 45 H 0.96703 * 114.00533 * 89.99571 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2930 2.3747 -0.0005 5 6 1.9217 3.6059 -0.0011 6 6 1.1006 4.8696 -0.0022 7 7 1.1337 5.4763 1.3352 8 6 0.3415 6.7129 1.3721 9 6 1.2012 7.8836 0.8896 10 6 0.3618 9.1650 0.8965 11 7 -0.2100 9.3487 2.2375 12 6 -0.0296 10.5232 2.9180 13 1 0.8422 11.1307 2.7251 14 6 -0.9674 10.9330 3.8559 15 7 -0.6328 11.8046 4.7836 16 14 -2.7042 10.2473 3.8014 17 1 -2.7954 9.0592 4.6877 18 1 -3.6607 11.2846 4.2640 19 1 -3.0371 9.8527 2.4089 20 6 -0.9792 8.2482 2.8342 21 6 -0.1248 6.9771 2.8056 22 6 3.3033 3.6804 -0.0016 23 17 4.0875 5.2292 -0.0016 24 6 4.0609 2.5230 -0.0011 25 6 3.4360 1.2862 -0.0005 26 8 4.1791 0.1473 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2145 2.3193 -0.0014 31 1 1.5122 5.5697 -0.7291 32 1 0.0703 4.6331 -0.2685 33 1 2.0831 5.6458 1.6319 34 1 -0.5265 6.6076 0.7213 35 1 2.0563 8.0053 1.5543 36 1 1.5522 7.6841 -0.1229 37 1 -0.4420 9.0794 0.1652 38 1 0.9923 10.0188 0.6481 39 1 -1.2882 12.0912 5.4388 40 1 -1.8924 8.0878 2.2610 41 1 -1.2336 8.4945 3.8651 42 1 -0.7175 6.1324 3.1568 43 1 0.7429 7.1073 3.4523 44 1 5.1392 2.5832 0.0031 45 1 4.3938 -0.1815 0.8842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602538515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:19 Heat of formation + Delta-G solvation = -57.695099 kcal Electronic energy + Delta-G solvation = -27348.537717 eV Core-core repulsion = 23392.116587 eV Total energy + Delta-G solvation = -3956.421130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57275 -39.92206 -38.99465 -38.34149 -37.19841 -36.41461 -34.21019 -32.57799 -31.89741 -31.21872 -30.32274 -28.30836 -26.81505 -25.41489 -24.27328 -23.60495 -23.03201 -22.48376 -21.08567 -19.73238 -18.88637 -18.35843 -17.92770 -17.33401 -17.10945 -16.65017 -16.16465 -16.04039 -15.89167 -15.45216 -15.35079 -15.25447 -15.13868 -14.74642 -14.47030 -14.27122 -14.10490 -13.86739 -13.66060 -13.37893 -13.19298 -12.87019 -12.75464 -12.55207 -12.47158 -12.37330 -12.19515 -11.97912 -11.80929 -11.73887 -11.68461 -11.59621 -11.42572 -11.23443 -10.69654 -9.98376 -9.35365 -9.10130 -8.92395 -8.16215 -5.47733 -0.03353 0.07374 1.09075 1.31311 1.41946 1.51656 2.22170 2.31097 2.42705 3.06287 3.12377 3.23180 3.40012 3.60439 3.74114 3.88876 3.94029 4.08139 4.25213 4.32567 4.34608 4.39187 4.39980 4.47358 4.53854 4.58695 4.69330 4.73044 4.75453 4.79674 4.83424 4.89012 4.90562 5.00608 5.12685 5.16310 5.24416 5.26379 5.40096 5.46146 5.86945 6.05196 6.12752 6.17626 6.37482 6.78597 6.92966 7.63579 8.03713 9.03929 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.002632 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.039926 B =10634.709201 C =11634.919593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.321 6.321 3 C 0.102 3.898 4 C -0.165 4.165 5 C -0.041 4.041 6 C 0.094 3.906 7 N -0.678 5.678 8 C 0.105 3.895 9 C -0.148 4.148 10 C 0.147 3.853 11 N -0.620 5.620 12 C -0.249 4.249 13 H 0.048 0.952 14 C -0.038 4.038 15 N -0.959 5.959 16 Si 0.951 3.049 17 H -0.273 1.273 18 H -0.312 1.312 19 H -0.258 1.258 20 C 0.121 3.879 21 C -0.110 4.110 22 C -0.064 4.064 23 Cl -0.065 7.065 24 C -0.099 4.099 25 C 0.077 3.923 26 O -0.493 6.493 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.161 0.839 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.340 0.660 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.049 0.951 39 H 0.261 0.739 40 H 0.037 0.963 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.157 0.843 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.771 -27.322 -12.680 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.234 6.234 3 C 0.055 3.945 4 C -0.184 4.184 5 C -0.042 4.042 6 C -0.035 4.035 7 N -0.308 5.308 8 C -0.004 4.004 9 C -0.189 4.189 10 C 0.022 3.978 11 N -0.345 5.345 12 C -0.379 4.379 13 H 0.065 0.935 14 C -0.232 4.232 15 N -0.606 5.606 16 Si 0.779 3.221 17 H -0.200 1.200 18 H -0.242 1.242 19 H -0.183 1.183 20 C -0.004 4.004 21 C -0.149 4.149 22 C -0.091 4.091 23 Cl -0.037 7.037 24 C -0.118 4.118 25 C 0.031 3.969 26 O -0.306 6.306 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.179 0.821 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.159 0.841 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.174 0.826 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 4.330 -27.653 -12.942 30.837 hybrid contribution -0.034 1.275 0.528 1.381 sum 4.296 -26.378 -12.413 29.467 Atomic orbital electron populations 1.23427 0.76243 1.05842 1.02518 1.86142 1.23479 1.25613 1.88193 1.19612 0.91888 0.85541 0.97431 1.21155 1.01448 0.89736 1.06071 1.19551 0.91344 0.95674 0.97641 1.20982 1.00141 0.91597 0.90738 1.60737 1.18146 1.27111 1.24816 1.21341 0.95987 0.86733 0.96371 1.22543 0.98753 0.96538 1.01048 1.21014 0.95397 0.96251 0.85147 1.44491 1.62812 1.11692 1.15533 1.18857 1.03235 0.98788 1.17016 0.93457 1.25942 1.01879 0.98110 0.97309 1.69981 1.35530 1.37942 1.17118 0.85847 0.80992 0.76404 0.78826 1.19979 1.24153 1.18262 1.21407 0.93990 0.88232 0.96792 1.21839 0.99606 0.96649 0.96822 1.20608 0.92353 0.86989 1.09144 1.98390 1.80503 1.27771 1.96990 1.21181 1.01522 0.89175 0.99953 1.17579 0.86431 0.86513 1.06348 1.84842 1.71601 1.38835 1.35278 0.91539 0.91455 0.86161 0.82148 0.93140 0.88354 0.84069 0.89636 0.93397 0.90432 0.94382 0.93190 0.92985 0.94540 0.93419 0.90164 0.93568 0.82552 0.73427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.34 10.28 -79.85 -0.82 -6.16 16 3 C 0.10 1.82 6.70 22.57 0.15 1.97 16 4 C -0.16 -2.70 8.65 22.35 0.19 -2.51 16 5 C -0.04 -0.76 5.43 -19.83 -0.11 -0.87 16 6 C 0.09 1.78 5.04 85.56 0.43 2.22 16 7 N -0.68 -15.92 6.24 -495.41 -3.09 -19.01 16 8 C 0.11 2.91 2.43 44.94 0.11 3.01 16 9 C -0.15 -4.48 5.33 30.68 0.16 -4.32 16 10 C 0.15 5.57 6.52 86.36 0.56 6.14 16 11 N -0.62 -29.13 2.77 -699.09 -1.94 -31.07 16 12 C -0.25 -14.35 10.04 84.04 0.84 -13.51 16 13 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 14 C -0.04 -2.25 5.23 84.87 0.44 -1.80 16 15 N -0.96 -61.18 13.97 21.66 0.30 -60.88 16 16 Si 0.95 46.76 24.35 68.60 1.67 48.43 16 17 H -0.27 -12.66 6.62 99.48 0.66 -12.00 16 18 H -0.31 -15.66 7.11 99.48 0.71 -14.96 16 19 H -0.26 -12.01 6.64 99.48 0.66 -11.35 16 20 C 0.12 5.05 4.20 86.36 0.36 5.41 16 21 C -0.11 -3.66 5.69 30.67 0.17 -3.49 16 22 C -0.06 -1.23 6.23 22.32 0.14 -1.09 16 23 Cl -0.07 -1.33 26.37 -2.72 -0.07 -1.40 16 24 C -0.10 -1.75 9.76 22.37 0.22 -1.53 16 25 C 0.08 1.40 6.72 22.57 0.15 1.55 16 26 O -0.49 -7.96 13.29 -79.54 -1.06 -9.02 16 27 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 28 H 0.07 0.48 7.66 -2.38 -0.02 0.46 16 29 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.16 1.95 6.24 -2.91 -0.02 1.93 16 31 H 0.05 0.98 6.84 -2.39 -0.02 0.97 16 32 H 0.10 1.59 7.86 -2.39 -0.02 1.57 16 33 H 0.34 8.50 7.04 -89.69 -0.63 7.87 16 34 H 0.09 2.19 7.80 -2.39 -0.02 2.17 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.96 7.42 -2.39 -0.02 1.94 16 37 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 39 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.04 1.44 7.08 -2.38 -0.02 1.42 16 41 H 0.05 2.23 4.50 -2.39 -0.01 2.22 16 42 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 45 H 0.41 2.90 9.06 -74.06 -0.67 2.23 16 Total: -1.00 -71.55 367.62 -0.42 -71.97 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -0.37 Total: 14.73 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 4.95 Total: -7.58 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -4.72 Total: -110.96 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.88 Total: -15.18 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.43 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.07 Total: -1.40 kcal Total: -71.55 -0.42 -71.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602538515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.278 kcal (2) G-P(sol) polarization free energy of solvation -71.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds