Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00030 * 2 1 4 4 C 1.52996 * 109.47237 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47007 * 67.00783 * 4 3 2 6 6 C 1.46899 * 111.00175 * 289.86787 * 5 4 3 7 7 C 1.50702 * 109.47398 * 299.64129 * 6 5 4 8 8 H 1.08004 * 119.99904 * 354.96244 * 7 6 5 9 9 C 1.37868 * 119.99944 * 174.96783 * 7 6 5 10 10 N 1.31516 * 120.00196 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47390 * 90.00497 * 11 9 7 13 13 H 1.48500 * 109.47233 * 210.00047 * 11 9 7 14 14 H 1.48500 * 109.47563 * 330.00255 * 11 9 7 15 15 C 1.46900 * 110.99756 * 53.82839 * 5 4 3 16 16 C 1.50695 * 109.47138 * 66.04251 * 15 5 4 17 17 O 1.21278 * 120.00333 * 359.97438 * 16 15 5 18 18 N 1.34785 * 119.99617 * 179.97438 * 16 15 5 19 19 C 1.46501 * 119.99516 * 179.97438 * 18 16 15 20 20 C 1.50705 * 109.46581 * 180.02562 * 19 18 16 21 21 O 1.21442 * 120.00181 * 359.97438 * 20 19 18 22 22 C 1.41231 * 119.99908 * 180.02562 * 20 19 18 23 23 C 1.37180 * 125.48284 * 180.02562 * 22 20 19 24 24 C 1.37209 * 113.24505 * 179.97438 * 23 22 20 25 25 C 1.34015 * 115.14690 * 359.97438 * 24 23 22 26 26 S 1.70613 * 110.99893 * 359.72687 * 25 24 23 27 27 H 1.09003 * 109.47205 * 300.00193 * 1 2 3 28 28 H 1.08996 * 109.47238 * 59.99805 * 1 2 3 29 29 H 1.08995 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47121 * 59.99814 * 3 2 1 31 31 H 1.09001 * 109.46860 * 299.99672 * 3 2 1 32 32 H 1.09003 * 109.46942 * 307.01238 * 4 3 2 33 33 H 1.08999 * 109.47334 * 187.00889 * 4 3 2 34 34 H 1.09000 * 109.47071 * 59.64069 * 6 5 4 35 35 H 1.08995 * 109.47100 * 179.63515 * 6 5 4 36 36 H 0.97001 * 120.00336 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.46886 * 306.03899 * 15 5 4 38 38 H 1.09005 * 109.46827 * 186.04637 * 15 5 4 39 39 H 0.97000 * 119.99786 * 0.02562 * 18 16 15 40 40 H 1.08995 * 109.47486 * 299.99708 * 19 18 16 41 41 H 1.08997 * 109.47345 * 60.00855 * 19 18 16 42 42 H 1.07998 * 123.37825 * 359.95655 * 23 22 20 43 43 H 1.08000 * 122.42346 * 180.02562 * 24 23 22 44 44 H 1.08000 * 124.50199 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9803 0.6070 -1.2760 6 6 3.6033 -0.8095 -1.3722 7 6 4.2504 -1.5791 -0.2496 8 1 4.9429 -1.0842 0.4153 9 6 3.9586 -2.9147 -0.0715 10 7 4.5236 -3.5864 0.9078 11 14 2.7605 -3.7703 -1.2213 12 1 3.5026 -4.3418 -2.3737 13 1 2.0658 -4.8604 -0.4904 14 1 1.7606 -2.7891 -1.7139 15 6 3.4508 1.3713 -2.4133 16 6 4.0544 2.7521 -2.4152 17 8 4.8472 3.0686 -1.5537 18 7 3.7131 3.6353 -3.3744 19 6 4.2994 4.9779 -3.3759 20 6 3.7562 5.7618 -4.5427 21 8 2.9573 5.2487 -5.2998 22 6 4.1771 7.0929 -4.7564 23 6 3.7570 7.9067 -5.7777 24 6 4.3274 9.1542 -5.7457 25 6 5.1847 9.3627 -4.7370 26 16 5.3170 7.9768 -3.7507 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8491 0.5392 0.8197 33 1 3.9782 2.1728 0.1248 34 1 2.5198 -0.9029 -1.2993 35 1 3.9390 -1.2107 -2.3285 36 1 4.3180 -4.5260 1.0334 37 1 2.3671 1.4485 -2.3261 38 1 3.7051 0.8622 -3.3430 39 1 3.0787 3.3823 -4.0631 40 1 4.0443 5.4869 -2.4464 41 1 5.3832 4.9010 -3.4624 42 1 3.0485 7.5965 -6.5315 43 1 4.1011 9.9134 -6.4797 44 1 5.7172 10.2869 -4.5678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608564481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -49.598314 kcal Electronic energy + Delta-G solvation = -27041.164828 eV Core-core repulsion = 23087.138507 eV Total energy + Delta-G solvation = -3954.026321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.50107 -39.45633 -37.99180 -37.68172 -35.63430 -34.38023 -32.32038 -31.34508 -29.54700 -29.09204 -27.74525 -26.09339 -25.37011 -24.47196 -22.43148 -21.60998 -20.60749 -19.73106 -19.55672 -18.07779 -16.98384 -16.63284 -16.55766 -16.31512 -16.08240 -15.89474 -15.76852 -14.93007 -14.69192 -14.57971 -14.19301 -14.04140 -13.87899 -13.63481 -13.31978 -13.29606 -13.13638 -12.71754 -12.70788 -12.25154 -12.10197 -11.67338 -11.44021 -11.43263 -11.17508 -11.06258 -10.64499 -10.43097 -10.38042 -10.29647 -9.75278 -9.46046 -9.43612 -9.20510 -9.09685 -9.09267 -8.98926 -8.36932 -7.17327 -5.86362 -3.80232 -0.25562 0.96466 1.36258 1.63456 2.41412 2.85773 2.97475 3.40758 3.47256 3.52001 3.67634 4.32121 4.41256 4.59590 4.71296 4.75481 4.90034 4.95053 4.98409 5.03634 5.23153 5.40610 5.41301 5.47965 5.53345 5.61826 5.63534 5.66839 5.75430 5.81358 5.84565 5.99275 6.02830 6.26115 6.42613 6.85247 6.95121 7.10012 7.39028 7.47881 7.70088 7.76231 8.01393 8.14717 8.42749 8.83063 9.21565 9.76709 11.27258 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.002230 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.429974 B =12552.730934 C =12709.126652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.351 6.351 3 C 0.023 3.977 4 C 0.056 3.944 5 N -0.504 5.504 6 C 0.149 3.851 7 C -0.490 4.490 8 H 0.078 0.922 9 C 0.069 3.931 10 N -0.907 5.907 11 Si 0.873 3.127 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.263 1.263 15 C 0.028 3.972 16 C 0.518 3.482 17 O -0.515 6.515 18 N -0.734 5.734 19 C 0.073 3.927 20 C 0.421 3.579 21 O -0.447 6.447 22 C -0.312 4.312 23 C -0.038 4.038 24 C -0.160 4.160 25 C -0.223 4.223 26 S 0.243 5.757 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.032 0.968 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.408 0.592 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.058 27.370 -12.363 30.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.269 6.269 3 C -0.056 4.056 4 C -0.072 4.072 5 N -0.227 5.227 6 C 0.024 3.976 7 C -0.528 4.528 8 H 0.096 0.904 9 C -0.131 4.131 10 N -0.548 5.548 11 Si 0.701 3.299 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.188 1.188 15 C -0.103 4.103 16 C 0.304 3.696 17 O -0.389 6.389 18 N -0.392 5.392 19 C -0.052 4.052 20 C 0.300 3.700 21 O -0.324 6.324 22 C -0.431 4.431 23 C -0.072 4.072 24 C -0.191 4.191 25 C -0.361 4.361 26 S 0.511 5.489 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.050 0.950 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.244 0.756 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.172 0.828 43 H 0.164 0.836 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.393 26.647 -10.719 28.822 hybrid contribution -2.799 0.165 -2.268 3.606 sum -5.191 26.813 -12.988 30.241 Atomic orbital electron populations 1.22710 0.83671 1.02172 0.98711 1.88404 1.17422 1.26461 1.94653 1.23431 0.97918 0.85527 0.98682 1.22447 0.88612 1.01577 0.94610 1.61918 1.57844 1.03810 0.99089 1.20544 0.96773 0.82847 0.97460 1.20912 1.25254 0.94123 1.12530 0.90402 1.24804 0.95852 0.97269 0.95205 1.69901 1.44366 1.09121 1.31373 0.86888 0.82363 0.79408 0.81237 1.20752 1.21680 1.18792 1.22041 0.97911 0.91420 0.98956 1.21003 0.81547 0.86622 0.80389 1.90655 1.33276 1.78469 1.36501 1.45846 1.48716 1.12285 1.32340 1.21521 1.00315 0.85096 0.98256 1.20115 0.79506 0.85525 0.84894 1.90599 1.27795 1.70172 1.43856 1.24008 1.11592 1.01615 1.05879 1.21049 0.97580 0.92057 0.96533 1.20088 0.99862 0.98208 1.00943 1.25641 1.04595 1.04958 1.00888 1.83372 1.38099 1.01772 1.25627 0.94834 0.95203 0.90173 0.94028 0.94606 0.87954 0.89202 0.95044 0.96764 0.93028 0.92273 0.88381 0.75558 0.88072 0.87886 0.82817 0.83581 0.81081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 101.05 1.11 1.50 16 2 O -0.35 -7.14 7.58 -35.23 -0.27 -7.41 16 3 C 0.02 0.41 5.69 37.16 0.21 0.62 16 4 C 0.06 1.15 5.33 -3.82 -0.02 1.12 16 5 N -0.50 -10.91 4.48 -237.52 -1.07 -11.97 16 6 C 0.15 3.68 3.39 -4.98 -0.02 3.66 16 7 C -0.49 -14.25 8.77 -34.44 -0.30 -14.55 16 8 H 0.08 2.49 7.23 -52.48 -0.38 2.11 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.91 -28.63 13.96 55.43 0.77 -27.85 16 11 Si 0.87 22.22 27.57 -169.99 -4.69 17.53 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.26 -6.40 6.40 56.52 0.36 -6.04 16 15 C 0.03 0.48 5.09 -4.98 -0.03 0.46 16 16 C 0.52 8.19 7.59 -10.98 -0.08 8.10 16 17 O -0.52 -9.74 14.31 5.56 0.08 -9.66 16 18 N -0.73 -9.01 5.53 -61.47 -0.34 -9.35 16 19 C 0.07 0.75 5.45 -5.19 -0.03 0.72 16 20 C 0.42 4.13 7.00 -33.17 -0.23 3.90 16 21 O -0.45 -5.38 16.04 5.42 0.09 -5.30 16 22 C -0.31 -2.52 6.23 -38.83 -0.24 -2.76 16 23 C -0.04 -0.27 9.95 -40.34 -0.40 -0.67 16 24 C -0.16 -0.87 10.14 -41.44 -0.42 -1.29 16 25 C -0.22 -1.08 10.93 29.25 0.32 -0.76 16 26 S 0.24 1.43 22.42 -107.50 -2.41 -0.98 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.58 5.79 -51.93 -0.30 0.28 16 32 H 0.10 2.42 6.33 -51.93 -0.33 2.09 16 33 H 0.09 1.77 6.01 -51.93 -0.31 1.46 16 34 H 0.03 0.79 3.99 -51.93 -0.21 0.59 16 35 H 0.01 0.36 7.72 -51.93 -0.40 -0.04 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.06 0.93 5.71 -51.93 -0.30 0.63 16 38 H 0.10 1.54 8.01 -51.93 -0.42 1.12 16 39 H 0.41 4.53 7.44 -40.82 -0.30 4.23 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.15 1.01 8.02 -52.49 -0.42 0.59 16 43 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -35.97 374.07 -8.34 -44.31 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.92 Total: 3.04 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.23 Total: 2.00 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.63 Total: -49.18 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.10 Total: -22.36 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.69 Total: 17.53 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.41 Total: -0.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.97 -8.34 -44.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608564481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.284 kcal (2) G-P(sol) polarization free energy of solvation -35.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds