Wall clock time and date at job start Sat Apr 11 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00030 * 2 1 4 4 C 1.52996 * 109.47237 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47007 * 67.00783 * 4 3 2 6 6 C 1.46899 * 111.00175 * 289.86787 * 5 4 3 7 7 C 1.50702 * 109.47398 * 299.64129 * 6 5 4 8 8 H 1.08004 * 119.99904 * 354.96244 * 7 6 5 9 9 C 1.37868 * 119.99944 * 174.96783 * 7 6 5 10 10 N 1.31516 * 120.00196 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47390 * 90.00497 * 11 9 7 13 13 H 1.48500 * 109.47233 * 210.00047 * 11 9 7 14 14 H 1.48500 * 109.47563 * 330.00255 * 11 9 7 15 15 C 1.46900 * 110.99756 * 53.82839 * 5 4 3 16 16 C 1.50695 * 109.47138 * 66.04251 * 15 5 4 17 17 O 1.21278 * 120.00333 * 359.97438 * 16 15 5 18 18 N 1.34785 * 119.99617 * 179.97438 * 16 15 5 19 19 C 1.46501 * 119.99516 * 179.97438 * 18 16 15 20 20 C 1.50705 * 109.46581 * 180.02562 * 19 18 16 21 21 O 1.21442 * 120.00181 * 359.97438 * 20 19 18 22 22 C 1.41231 * 119.99908 * 180.02562 * 20 19 18 23 23 C 1.37180 * 125.48284 * 180.02562 * 22 20 19 24 24 C 1.37209 * 113.24505 * 179.97438 * 23 22 20 25 25 C 1.34015 * 115.14690 * 359.97438 * 24 23 22 26 26 S 1.70613 * 110.99893 * 359.72687 * 25 24 23 27 27 H 1.09003 * 109.47205 * 300.00193 * 1 2 3 28 28 H 1.08996 * 109.47238 * 59.99805 * 1 2 3 29 29 H 1.08995 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47121 * 59.99814 * 3 2 1 31 31 H 1.09001 * 109.46860 * 299.99672 * 3 2 1 32 32 H 1.09003 * 109.46942 * 307.01238 * 4 3 2 33 33 H 1.08999 * 109.47334 * 187.00889 * 4 3 2 34 34 H 1.09000 * 109.47071 * 59.64069 * 6 5 4 35 35 H 1.08995 * 109.47100 * 179.63515 * 6 5 4 36 36 H 0.97001 * 120.00336 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.46886 * 306.03899 * 15 5 4 38 38 H 1.09005 * 109.46827 * 186.04637 * 15 5 4 39 39 H 0.97000 * 119.99786 * 0.02562 * 18 16 15 40 40 H 1.08995 * 109.47486 * 299.99708 * 19 18 16 41 41 H 1.08997 * 109.47345 * 60.00855 * 19 18 16 42 42 H 1.07998 * 123.37825 * 359.95655 * 23 22 20 43 43 H 1.08000 * 122.42346 * 180.02562 * 24 23 22 44 44 H 1.08000 * 124.50199 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9803 0.6070 -1.2760 6 6 3.6033 -0.8095 -1.3722 7 6 4.2504 -1.5791 -0.2496 8 1 4.9429 -1.0842 0.4153 9 6 3.9586 -2.9147 -0.0715 10 7 4.5236 -3.5864 0.9078 11 14 2.7605 -3.7703 -1.2213 12 1 3.5026 -4.3418 -2.3737 13 1 2.0658 -4.8604 -0.4904 14 1 1.7606 -2.7891 -1.7139 15 6 3.4508 1.3713 -2.4133 16 6 4.0544 2.7521 -2.4152 17 8 4.8472 3.0686 -1.5537 18 7 3.7131 3.6353 -3.3744 19 6 4.2994 4.9779 -3.3759 20 6 3.7562 5.7618 -4.5427 21 8 2.9573 5.2487 -5.2998 22 6 4.1771 7.0929 -4.7564 23 6 3.7570 7.9067 -5.7777 24 6 4.3274 9.1542 -5.7457 25 6 5.1847 9.3627 -4.7370 26 16 5.3170 7.9768 -3.7507 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8491 0.5392 0.8197 33 1 3.9782 2.1728 0.1248 34 1 2.5198 -0.9029 -1.2993 35 1 3.9390 -1.2107 -2.3285 36 1 4.3180 -4.5260 1.0334 37 1 2.3671 1.4485 -2.3261 38 1 3.7051 0.8622 -3.3430 39 1 3.0787 3.3823 -4.0631 40 1 4.0443 5.4869 -2.4464 41 1 5.3832 4.9010 -3.4624 42 1 3.0485 7.5965 -6.5315 43 1 4.1011 9.9134 -6.4797 44 1 5.7172 10.2869 -4.5678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608564481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:59 Heat of formation + Delta-G solvation = -77.361509 kcal Electronic energy + Delta-G solvation = -27042.368731 eV Core-core repulsion = 23087.138507 eV Total energy + Delta-G solvation = -3955.230223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43075 -40.59846 -39.25156 -38.36142 -37.17534 -35.50519 -34.52303 -32.06493 -30.93223 -30.66731 -28.90743 -27.33813 -26.58148 -25.49197 -24.14503 -22.44076 -21.82641 -21.09813 -20.23669 -19.09212 -18.71415 -17.73646 -17.72562 -17.61839 -17.31600 -16.86380 -16.59881 -16.35482 -15.85760 -15.78425 -15.68124 -15.34660 -15.09190 -14.91602 -14.35605 -14.32088 -14.02911 -13.74761 -13.73705 -13.56523 -13.20823 -13.16335 -12.99766 -12.72422 -12.54738 -12.47238 -12.23164 -11.91953 -11.87868 -11.70601 -11.35568 -11.19993 -10.75149 -10.69520 -10.40123 -10.24848 -9.93852 -9.57440 -8.82110 -8.15168 -6.14227 -0.79632 0.49235 0.92301 1.08000 1.39471 1.42193 1.54266 1.60839 1.86073 1.92330 2.45647 2.90801 2.95421 3.20831 3.39582 3.83552 4.02369 4.04117 4.16330 4.17766 4.23562 4.26746 4.34471 4.36538 4.45670 4.50735 4.52099 4.55368 4.60535 4.74566 4.84097 4.97699 5.03225 5.17548 5.25748 5.31904 5.36806 5.47273 5.67206 6.02718 6.22772 6.31793 6.40367 6.47328 6.75975 6.88718 7.22528 7.46823 9.02181 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.002230 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.429974 B =12552.730934 C =12709.126652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.394 6.394 3 C 0.030 3.970 4 C 0.062 3.938 5 N -0.527 5.527 6 C 0.162 3.838 7 C -0.491 4.491 8 H 0.028 0.972 9 C 0.005 3.995 10 N -0.958 5.958 11 Si 0.946 3.054 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.241 1.241 15 C 0.027 3.973 16 C 0.524 3.476 17 O -0.552 6.552 18 N -0.719 5.719 19 C 0.070 3.930 20 C 0.431 3.569 21 O -0.478 6.478 22 C -0.345 4.345 23 C -0.037 4.037 24 C -0.170 4.170 25 C -0.208 4.208 26 S 0.253 5.747 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.039 0.961 35 H 0.017 0.983 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.416 0.584 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.154 0.846 43 H 0.169 0.831 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 29.707 -14.671 33.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.313 6.313 3 C -0.048 4.048 4 C -0.066 4.066 5 N -0.251 5.251 6 C 0.036 3.964 7 C -0.529 4.529 8 H 0.046 0.954 9 C -0.190 4.190 10 N -0.600 5.600 11 Si 0.770 3.230 12 H -0.197 1.197 13 H -0.215 1.215 14 H -0.164 1.164 15 C -0.104 4.104 16 C 0.311 3.689 17 O -0.429 6.429 18 N -0.375 5.375 19 C -0.055 4.055 20 C 0.312 3.688 21 O -0.358 6.358 22 C -0.464 4.464 23 C -0.072 4.072 24 C -0.200 4.200 25 C -0.346 4.346 26 S 0.521 5.479 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.254 0.746 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.171 0.829 43 H 0.186 0.814 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.150 29.038 -13.060 32.109 hybrid contribution -2.162 -0.366 -1.514 2.664 sum -6.312 28.673 -14.574 32.777 Atomic orbital electron populations 1.22902 0.81245 1.02865 1.00737 1.88296 1.20178 1.27782 1.95026 1.23328 0.95540 0.85225 1.00697 1.22236 0.91126 1.00403 0.92848 1.61719 1.59393 1.02969 1.00977 1.20256 0.96480 0.84361 0.95288 1.21129 1.24249 0.94606 1.12948 0.95395 1.25757 0.98058 0.98131 0.97086 1.70077 1.46562 1.09585 1.33821 0.85734 0.80093 0.78314 0.78864 1.19682 1.21538 1.16388 1.22107 0.99037 0.91714 0.97516 1.20715 0.81080 0.86586 0.80554 1.90650 1.35018 1.79052 1.38156 1.45653 1.48073 1.12576 1.31245 1.21695 1.00548 0.84003 0.99210 1.20076 0.78724 0.86048 0.83995 1.90585 1.29419 1.70933 1.44837 1.23922 1.13607 1.01290 1.07538 1.21265 0.97217 0.92670 0.96030 1.20313 0.99873 0.98012 1.01760 1.26049 1.03550 1.05322 0.99687 1.83368 1.37183 1.02012 1.25331 0.93110 0.92813 0.90242 0.92224 0.92111 0.92552 0.88659 0.94340 0.96454 0.92967 0.90183 0.86909 0.74627 0.87128 0.87444 0.82864 0.81369 0.78301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 11.01 113.37 1.25 1.78 16 2 O -0.39 -15.44 7.58 -148.98 -1.13 -16.57 16 3 C 0.03 1.03 5.69 71.98 0.41 1.44 16 4 C 0.06 2.60 5.33 86.30 0.46 3.06 16 5 N -0.53 -22.86 4.48 -905.37 -4.06 -26.92 16 6 C 0.16 7.97 3.39 85.56 0.29 8.26 16 7 C -0.49 -29.61 8.77 25.60 0.22 -29.39 16 8 H 0.03 1.91 7.23 -2.91 -0.02 1.89 16 9 C 0.01 0.31 5.47 84.65 0.46 0.77 16 10 N -0.96 -62.68 13.96 21.44 0.30 -62.39 16 11 Si 0.95 45.92 27.57 68.60 1.89 47.81 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 14 H -0.24 -10.70 6.40 99.48 0.64 -10.07 16 15 C 0.03 0.88 5.09 85.56 0.44 1.31 16 16 C 0.52 15.91 7.59 87.65 0.67 16.57 16 17 O -0.55 -20.68 14.31 -3.02 -0.04 -20.72 16 18 N -0.72 -16.51 5.53 -466.79 -2.58 -19.09 16 19 C 0.07 1.35 5.45 85.63 0.47 1.82 16 20 C 0.43 8.02 7.00 26.42 0.19 8.21 16 21 O -0.48 -11.13 16.04 -3.53 -0.06 -11.19 16 22 C -0.35 -5.14 6.23 22.76 0.14 -5.00 16 23 C -0.04 -0.47 9.95 21.78 0.22 -0.25 16 24 C -0.17 -1.39 10.14 21.07 0.21 -1.17 16 25 C -0.21 -1.38 10.93 66.86 0.73 -0.65 16 26 S 0.25 2.51 22.42 -56.49 -1.27 1.24 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.77 5.79 -2.39 -0.01 1.76 16 32 H 0.06 2.84 6.33 -2.39 -0.02 2.83 16 33 H 0.10 3.83 6.01 -2.39 -0.01 3.82 16 34 H 0.04 1.88 3.99 -2.39 -0.01 1.87 16 35 H 0.02 0.84 7.72 -2.39 -0.02 0.82 16 36 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 37 H 0.08 2.26 5.71 -2.39 -0.01 2.25 16 38 H 0.11 3.29 8.01 -2.38 -0.02 3.27 16 39 H 0.42 8.45 7.44 -92.71 -0.69 7.76 16 40 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.15 1.87 8.02 -2.91 -0.02 1.84 16 43 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 44 H 0.20 0.16 8.06 -2.91 -0.02 0.14 16 Total: -1.00 -81.26 374.07 -0.52 -81.78 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.28 Total: 19.29 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 6.15 Total: 6.76 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -6.34 Total: -108.40 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -1.23 Total: -48.48 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.89 Total: 47.81 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.27 Total: 1.24 kcal Total: -81.26 -0.52 -81.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608564481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.414 kcal (2) G-P(sol) polarization free energy of solvation -81.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds