Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34947 * 126.03981 * 2 1 4 4 C 1.35312 * 107.75078 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.04428 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.46857 * 90.00135 * 5 4 3 7 7 N 1.29944 * 126.28847 * 90.03212 * 6 5 4 8 8 O 1.21300 * 110.25251 * 179.97438 * 7 6 5 9 9 C 1.33642 * 109.81034 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.55191 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47293 * 270.02751 * 10 9 8 12 12 C 1.38328 * 119.96972 * 89.99434 * 11 10 9 13 13 C 1.38275 * 120.13835 * 180.02562 * 12 11 10 14 14 C 1.38123 * 120.06977 * 0.28020 * 13 12 11 15 15 C 1.38853 * 119.93133 * 359.45069 * 14 13 12 16 16 O 1.35749 * 120.07112 * 180.27775 * 15 14 13 17 17 C 1.34833 * 116.99801 * 354.75701 * 16 15 14 18 18 H 1.07999 * 120.00283 * 5.08278 * 17 16 15 19 19 C 1.38658 * 119.99720 * 185.08053 * 17 16 15 20 20 N 1.31553 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99773 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46855 * 90.00122 * 21 19 17 23 23 H 1.48494 * 109.47218 * 210.00112 * 21 19 17 24 24 H 1.48498 * 109.46997 * 330.00116 * 21 19 17 25 25 C 1.38080 * 119.96292 * 270.02113 * 11 10 9 26 26 N 1.31127 * 106.89760 * 0.22731 * 9 8 7 27 27 C 1.39872 * 107.91835 * 0.26719 * 4 3 2 28 28 N 1.30838 * 108.19894 * 359.55406 * 27 4 3 29 29 H 1.08994 * 109.47502 * 89.99393 * 1 2 3 30 30 H 1.09001 * 109.47188 * 209.99882 * 1 2 3 31 31 H 1.09001 * 109.46938 * 329.99150 * 1 2 3 32 32 H 1.08004 * 126.12355 * 0.05075 * 3 2 1 33 33 H 1.09000 * 109.46550 * 330.00022 * 5 4 3 34 34 H 1.08998 * 109.47092 * 210.00657 * 5 4 3 35 35 H 1.09001 * 109.47395 * 150.02322 * 10 9 8 36 36 H 1.08998 * 109.47262 * 30.02419 * 10 9 8 37 37 H 1.08001 * 119.92799 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.96093 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.03245 * 179.70156 * 14 13 12 40 40 H 0.96999 * 119.99776 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03814 * 359.95608 * 25 11 10 42 42 H 1.08004 * 125.90175 * 179.73480 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5453 -0.0002 6 6 5.1764 1.8371 1.4206 7 7 5.9960 1.1354 2.1449 8 8 6.1168 1.6336 3.2442 9 6 5.3632 2.7341 3.3281 10 6 5.2308 3.6423 4.5234 11 6 4.0987 3.1634 5.3952 12 6 4.3430 2.2509 6.4057 13 6 3.3067 1.8087 7.2074 14 6 2.0229 2.2728 6.9974 15 6 1.7752 3.1930 5.9875 16 8 0.5155 3.6552 5.7823 17 6 -0.4676 3.1012 6.5203 18 1 -0.2255 2.3857 7.2923 19 6 -1.7893 3.4501 6.2882 20 7 -2.0842 4.3213 5.3476 21 14 -3.1513 2.6820 7.3102 22 1 -3.4009 3.5189 8.5112 23 1 -4.3920 2.5983 6.4986 24 1 -2.7436 1.3181 7.7332 25 6 2.8184 3.6354 5.1840 26 7 4.7569 2.8698 2.1733 27 6 3.5346 -0.7321 -0.0071 28 7 2.2891 -1.1327 -0.0007 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.9281 2.1193 0.0008 33 1 4.5440 2.4805 -0.5134 34 1 5.5819 1.0345 -0.5147 35 1 5.0253 4.6584 4.1867 36 1 6.1593 3.6294 5.0941 37 1 5.3453 1.8832 6.5689 38 1 3.5008 1.0966 7.9958 39 1 1.2132 1.9234 7.6208 40 1 -3.0089 4.5650 5.1850 41 1 2.6282 4.3480 4.3951 42 1 4.4054 -1.3711 -0.0132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761803033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = 144.628233 kcal Electronic energy + Delta-G solvation = -28206.874112 eV Core-core repulsion = 24158.118886 eV Total energy + Delta-G solvation = -4048.755226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.37349 -41.22744 -39.16910 -36.91031 -36.05431 -34.26130 -33.29630 -32.35304 -31.75617 -30.74461 -29.26597 -28.32014 -27.05188 -25.94108 -25.32614 -23.46614 -22.13478 -21.57076 -21.11805 -20.79986 -20.10948 -18.08164 -17.71034 -17.30959 -16.99729 -16.65984 -15.54295 -15.18671 -15.07907 -14.70582 -14.53000 -14.48904 -14.14900 -13.81485 -13.69289 -13.59416 -13.32021 -13.04106 -12.69653 -12.61867 -12.57601 -12.44063 -12.13400 -11.82609 -11.60733 -11.39684 -11.33371 -10.96801 -10.90586 -10.83107 -10.70826 -10.61876 -10.50872 -9.72352 -9.46341 -9.40657 -8.90927 -8.51329 -8.23391 -7.33284 -6.51100 -4.10262 1.29570 1.83028 1.94205 2.26815 2.36024 2.53352 2.73071 3.04537 3.08893 3.10169 3.13804 3.85115 3.91248 4.19925 4.46001 4.50114 4.82074 4.90181 4.99805 5.05150 5.08567 5.09263 5.17576 5.26391 5.37707 5.39846 5.45956 5.49829 5.59084 5.69939 5.75193 5.85839 5.92804 6.03642 6.07024 6.17697 6.25878 6.54037 6.56332 6.80869 6.93501 6.98411 7.13630 7.26853 7.34891 7.63438 7.69957 7.93403 8.35705 8.94510 9.63628 10.66652 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008339 B = 0.003794 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.791245 B = 7379.143259 C = 9825.672191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.372 5.372 3 C 0.083 3.917 4 C -0.249 4.249 5 C 0.057 3.943 6 C 0.177 3.823 7 N -0.389 5.389 8 O 0.073 5.927 9 C 0.198 3.802 10 C 0.019 3.981 11 C -0.061 4.061 12 C -0.198 4.198 13 C -0.075 4.075 14 C -0.227 4.227 15 C 0.151 3.849 16 O -0.176 6.176 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.041 3.959 20 N -0.862 5.862 21 Si 0.939 3.061 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.167 4.167 26 N -0.476 5.476 27 C 0.060 3.940 28 N -0.300 5.300 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.270 0.730 41 H 0.121 0.879 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.285 -3.841 -8.343 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.153 5.153 3 C -0.065 4.065 4 C -0.262 4.262 5 C 0.017 3.983 6 C -0.096 4.096 7 N -0.098 5.098 8 O 0.015 5.985 9 C -0.022 4.022 10 C -0.019 4.019 11 C -0.062 4.062 12 C -0.217 4.217 13 C -0.093 4.093 14 C -0.246 4.246 15 C 0.097 3.903 16 O -0.080 6.080 17 C -0.469 4.469 18 H 0.109 0.891 19 C -0.164 4.164 20 N -0.496 5.496 21 Si 0.764 3.236 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.187 4.187 26 N -0.210 5.210 27 C -0.127 4.127 28 N -0.121 5.121 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.195 0.805 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.145 0.855 40 H 0.080 0.920 41 H 0.139 0.861 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.116 -5.109 -9.193 14.593 hybrid contribution -0.340 0.281 0.876 0.981 sum 9.776 -4.828 -8.317 13.713 Atomic orbital electron populations 1.21940 0.73742 1.05251 1.03290 1.48484 1.06896 1.03761 1.56131 1.22452 0.90691 0.93736 0.99619 1.19640 0.93634 0.93737 1.19141 1.18043 0.94865 0.99703 0.85721 1.25805 0.94284 0.89229 1.00285 1.74558 1.21658 1.20737 0.92843 1.85263 1.52931 1.33034 1.27235 1.28731 0.88668 0.88476 0.96372 1.19110 0.99566 0.95582 0.87672 1.18871 0.92469 0.98636 0.96251 1.20491 0.98714 1.02789 0.99720 1.20728 0.92472 0.98134 0.98005 1.21245 0.97545 1.03495 1.02337 1.19297 0.86735 0.91646 0.92596 1.83979 1.11236 1.55102 1.57661 1.21322 0.84541 1.25209 1.15784 0.89114 1.25270 0.97340 0.96658 0.97110 1.70036 1.19686 1.30220 1.29690 0.85737 0.79541 0.79292 0.79049 1.19776 1.20220 1.19212 1.20057 0.90644 1.05806 1.02166 1.71889 1.23516 1.23399 1.02190 1.23757 0.95267 0.94304 0.99345 1.77348 1.01553 1.08486 1.24705 0.90654 0.89183 0.88830 0.80511 0.88219 0.88528 0.86549 0.87456 0.87174 0.87200 0.85490 0.92015 0.86122 0.80159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 11.47 59.84 0.69 1.71 16 2 N -0.37 -5.12 4.01 -68.17 -0.27 -5.39 16 3 C 0.08 1.08 11.40 -17.22 -0.20 0.89 16 4 C -0.25 -3.24 5.33 -105.05 -0.56 -3.80 16 5 C 0.06 0.64 6.33 -29.04 -0.18 0.46 16 6 C 0.18 2.60 7.45 -156.38 -1.17 1.43 16 7 N -0.39 -6.02 12.16 30.90 0.38 -5.64 16 8 O 0.07 1.10 11.31 18.10 0.20 1.30 16 9 C 0.20 2.90 7.75 -13.06 -0.10 2.80 16 10 C 0.02 0.24 5.97 -29.04 -0.17 0.07 16 11 C -0.06 -1.02 5.11 -104.65 -0.54 -1.55 16 12 C -0.20 -3.25 9.70 -39.53 -0.38 -3.63 16 13 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 14 C -0.23 -4.84 9.17 -39.40 -0.36 -5.20 16 15 C 0.15 3.56 6.65 -39.11 -0.26 3.30 16 16 O -0.18 -4.93 9.76 0.04 0.00 -4.93 16 17 C -0.39 -10.76 9.49 30.89 0.29 -10.47 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -24.65 13.67 55.48 0.76 -23.89 16 21 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 26 N -0.48 -7.51 11.55 -9.87 -0.11 -7.63 16 27 C 0.06 0.81 11.96 -17.36 -0.21 0.60 16 28 N -0.30 -4.56 12.58 30.63 0.39 -4.17 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.18 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.12 1.29 8.08 -51.93 -0.42 0.87 16 36 H 0.11 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 42 H 0.18 1.97 8.06 -52.48 -0.42 1.54 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -34.35 375.18 -6.83 -41.18 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.77 Total: 6.33 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -4.02 Total: -17.92 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 1.13 Total: -46.72 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: 0.21 Total: -3.62 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.35 -6.83 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761803033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.808 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds