Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34947 * 126.03981 * 2 1 4 4 C 1.35312 * 107.75078 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.04428 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.46857 * 90.00135 * 5 4 3 7 7 N 1.29944 * 126.28847 * 90.03212 * 6 5 4 8 8 O 1.21300 * 110.25251 * 179.97438 * 7 6 5 9 9 C 1.33642 * 109.81034 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.55191 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47293 * 270.02751 * 10 9 8 12 12 C 1.38328 * 119.96972 * 89.99434 * 11 10 9 13 13 C 1.38275 * 120.13835 * 180.02562 * 12 11 10 14 14 C 1.38123 * 120.06977 * 0.28020 * 13 12 11 15 15 C 1.38853 * 119.93133 * 359.45069 * 14 13 12 16 16 O 1.35749 * 120.07112 * 180.27775 * 15 14 13 17 17 C 1.34833 * 116.99801 * 354.75701 * 16 15 14 18 18 H 1.07999 * 120.00283 * 5.08278 * 17 16 15 19 19 C 1.38658 * 119.99720 * 185.08053 * 17 16 15 20 20 N 1.31553 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99773 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46855 * 90.00122 * 21 19 17 23 23 H 1.48494 * 109.47218 * 210.00112 * 21 19 17 24 24 H 1.48498 * 109.46997 * 330.00116 * 21 19 17 25 25 C 1.38080 * 119.96292 * 270.02113 * 11 10 9 26 26 N 1.31127 * 106.89760 * 0.22731 * 9 8 7 27 27 C 1.39872 * 107.91835 * 0.26719 * 4 3 2 28 28 N 1.30838 * 108.19894 * 359.55406 * 27 4 3 29 29 H 1.08994 * 109.47502 * 89.99393 * 1 2 3 30 30 H 1.09001 * 109.47188 * 209.99882 * 1 2 3 31 31 H 1.09001 * 109.46938 * 329.99150 * 1 2 3 32 32 H 1.08004 * 126.12355 * 0.05075 * 3 2 1 33 33 H 1.09000 * 109.46550 * 330.00022 * 5 4 3 34 34 H 1.08998 * 109.47092 * 210.00657 * 5 4 3 35 35 H 1.09001 * 109.47395 * 150.02322 * 10 9 8 36 36 H 1.08998 * 109.47262 * 30.02419 * 10 9 8 37 37 H 1.08001 * 119.92799 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.96093 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.03245 * 179.70156 * 14 13 12 40 40 H 0.96999 * 119.99776 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03814 * 359.95608 * 25 11 10 42 42 H 1.08004 * 125.90175 * 179.73480 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5453 -0.0002 6 6 5.1764 1.8371 1.4206 7 7 5.9960 1.1354 2.1449 8 8 6.1168 1.6336 3.2442 9 6 5.3632 2.7341 3.3281 10 6 5.2308 3.6423 4.5234 11 6 4.0987 3.1634 5.3952 12 6 4.3430 2.2509 6.4057 13 6 3.3067 1.8087 7.2074 14 6 2.0229 2.2728 6.9974 15 6 1.7752 3.1930 5.9875 16 8 0.5155 3.6552 5.7823 17 6 -0.4676 3.1012 6.5203 18 1 -0.2255 2.3857 7.2923 19 6 -1.7893 3.4501 6.2882 20 7 -2.0842 4.3213 5.3476 21 14 -3.1513 2.6820 7.3102 22 1 -3.4009 3.5189 8.5112 23 1 -4.3920 2.5983 6.4986 24 1 -2.7436 1.3181 7.7332 25 6 2.8184 3.6354 5.1840 26 7 4.7569 2.8698 2.1733 27 6 3.5346 -0.7321 -0.0071 28 7 2.2891 -1.1327 -0.0007 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.9281 2.1193 0.0008 33 1 4.5440 2.4805 -0.5134 34 1 5.5819 1.0345 -0.5147 35 1 5.0253 4.6584 4.1867 36 1 6.1593 3.6294 5.0941 37 1 5.3453 1.8832 6.5689 38 1 3.5008 1.0966 7.9958 39 1 1.2132 1.9234 7.6208 40 1 -3.0089 4.5650 5.1850 41 1 2.6282 4.3480 4.3951 42 1 4.4054 -1.3711 -0.0132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761803033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = 121.958082 kcal Electronic energy + Delta-G solvation = -28207.857163 eV Core-core repulsion = 24158.118886 eV Total energy + Delta-G solvation = -4049.738278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -46.50849 -42.23135 -40.82271 -38.55079 -37.16437 -35.42375 -34.42428 -34.20810 -32.89097 -31.97072 -30.85207 -29.28946 -28.39115 -27.24999 -26.90535 -24.62043 -23.50190 -23.00010 -22.26418 -22.06423 -21.16438 -19.62545 -19.10115 -18.79295 -18.35247 -17.68552 -16.76050 -16.52737 -16.48210 -16.13622 -16.07576 -15.51613 -15.47932 -15.25024 -15.02196 -14.72969 -14.52994 -14.26575 -14.13424 -13.83109 -13.57437 -13.50866 -13.44141 -13.07372 -12.97801 -12.74933 -12.71831 -12.46985 -12.31087 -12.24305 -12.14094 -11.97786 -11.65661 -11.25660 -10.84092 -10.80500 -10.49874 -9.74301 -9.51630 -9.02565 -8.48283 -6.16513 0.12550 0.47851 0.71544 0.82072 1.25891 1.33274 1.41673 1.49745 1.59021 1.69830 1.94068 2.15551 2.74718 2.89797 3.14111 3.20519 3.41955 3.55142 3.86370 3.89801 4.07038 4.09661 4.19633 4.27354 4.31803 4.33048 4.38845 4.48394 4.53998 4.58837 4.60118 4.70826 4.73760 4.78697 4.90058 5.02294 5.04740 5.11060 5.12799 5.27661 5.59156 5.62129 5.68924 5.71566 5.98061 6.00908 6.18252 6.61276 6.96453 7.23901 7.76894 8.74570 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008339 B = 0.003794 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.791245 B = 7379.143259 C = 9825.672191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.070 3.930 4 C -0.253 4.253 5 C 0.059 3.941 6 C 0.174 3.826 7 N -0.402 5.402 8 O 0.072 5.928 9 C 0.197 3.803 10 C 0.023 3.977 11 C -0.050 4.050 12 C -0.175 4.175 13 C -0.075 4.075 14 C -0.242 4.242 15 C 0.110 3.890 16 O -0.231 6.231 17 C -0.414 4.414 18 H 0.099 0.901 19 C -0.019 4.019 20 N -0.917 5.917 21 Si 1.014 2.986 22 H -0.262 1.262 23 H -0.270 1.270 24 H -0.257 1.257 25 C -0.180 4.180 26 N -0.501 5.501 27 C 0.053 3.947 28 N -0.334 5.334 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.191 0.809 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.116 0.884 40 H 0.273 0.727 41 H 0.112 0.888 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.879 -4.846 -7.598 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.163 5.163 3 C -0.078 4.078 4 C -0.266 4.266 5 C 0.019 3.981 6 C -0.099 4.099 7 N -0.112 5.112 8 O 0.016 5.984 9 C -0.023 4.023 10 C -0.015 4.015 11 C -0.051 4.051 12 C -0.193 4.193 13 C -0.093 4.093 14 C -0.261 4.261 15 C 0.060 3.940 16 O -0.138 6.138 17 C -0.490 4.490 18 H 0.116 0.884 19 C -0.217 4.217 20 N -0.555 5.555 21 Si 0.833 3.167 22 H -0.187 1.187 23 H -0.195 1.195 24 H -0.180 1.180 25 C -0.199 4.199 26 N -0.235 5.235 27 C -0.132 4.132 28 N -0.156 5.156 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.208 0.792 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.176 0.824 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.130 0.870 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 12.767 -6.130 -8.434 16.484 hybrid contribution -0.805 0.544 0.626 1.156 sum 11.963 -5.586 -7.808 15.339 Atomic orbital electron populations 1.22145 0.72456 1.05249 1.04913 1.48776 1.07860 1.03614 1.56031 1.22849 0.91132 0.94332 0.99484 1.19859 0.94116 0.93770 1.18868 1.18241 0.94880 1.00532 0.84454 1.26317 0.93705 0.88647 1.01219 1.74546 1.22326 1.21162 0.93176 1.85238 1.53004 1.33056 1.27147 1.29030 0.88246 0.88410 0.96630 1.19319 0.99781 0.95537 0.86835 1.19269 0.92039 0.97370 0.96439 1.21130 1.00392 1.00324 0.97483 1.21172 0.91108 0.98129 0.98917 1.21366 0.99191 1.03590 1.01938 1.19882 0.86197 0.93435 0.94527 1.83939 1.12870 1.57444 1.59500 1.21774 0.85310 1.25671 1.16269 0.88410 1.26499 0.99675 0.97095 0.98410 1.70173 1.20319 1.32709 1.32318 0.84656 0.75891 0.78723 0.77408 1.18657 1.19478 1.18032 1.20278 0.91730 1.06140 1.01796 1.71920 1.24138 1.24287 1.03119 1.24182 0.95431 0.95010 0.98599 1.77285 1.02507 1.09672 1.26108 0.88243 0.89394 0.88600 0.79182 0.86540 0.86260 0.85139 0.82737 0.82440 0.83629 0.86595 0.91838 0.87004 0.78180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.93 11.47 127.77 1.47 3.39 16 2 N -0.38 -10.52 4.01 -369.58 -1.48 -12.01 16 3 C 0.07 1.81 11.40 83.54 0.95 2.77 16 4 C -0.25 -6.33 5.33 -20.14 -0.11 -6.44 16 5 C 0.06 1.22 6.33 29.10 0.18 1.40 16 6 C 0.17 4.77 7.45 138.46 1.03 5.80 16 7 N -0.40 -11.50 12.16 -60.33 -0.73 -12.24 16 8 O 0.07 1.95 11.31 74.84 0.85 2.79 16 9 C 0.20 5.19 7.75 88.38 0.68 5.88 16 10 C 0.02 0.49 5.97 29.10 0.17 0.67 16 11 C -0.05 -1.52 5.11 -19.88 -0.10 -1.62 16 12 C -0.17 -4.94 9.70 22.30 0.22 -4.73 16 13 C -0.08 -2.47 10.04 22.25 0.22 -2.25 16 14 C -0.24 -10.35 9.17 22.39 0.21 -10.15 16 15 C 0.11 5.38 6.65 22.58 0.15 5.53 16 16 O -0.23 -13.75 9.76 -22.76 -0.22 -13.97 16 17 C -0.41 -23.95 9.49 67.92 0.64 -23.31 16 18 H 0.10 5.23 5.20 -2.91 -0.02 5.22 16 19 C -0.02 -1.07 5.49 84.83 0.47 -0.60 16 20 N -0.92 -55.35 13.67 21.61 0.30 -55.05 16 21 Si 1.01 42.41 29.55 68.60 2.03 44.44 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 25 C -0.18 -7.38 9.65 22.39 0.22 -7.16 16 26 N -0.50 -14.89 11.55 -303.21 -3.50 -18.39 16 27 C 0.05 1.40 11.96 85.24 1.02 2.42 16 28 N -0.33 -10.12 12.58 -57.02 -0.72 -10.84 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.19 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.13 2.47 8.08 -2.39 -0.02 2.45 16 36 H 0.15 1.86 8.08 -2.39 -0.02 1.84 16 37 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 39 H 0.12 5.11 5.64 -2.91 -0.02 5.09 16 40 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 42 H 0.20 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -80.17 375.18 5.00 -75.17 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 1.07 Total: 28.48 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 7.42 Total: -28.39 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -6.14 Total: -108.52 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.62 Total: -11.18 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -80.17 5.00 -75.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761803033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.132 kcal (2) G-P(sol) polarization free energy of solvation -80.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds