Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42104 * 108.58092 * 2 1 4 4 O 1.42103 * 108.58216 * 228.97355 * 2 1 3 5 5 C 1.81401 * 101.92069 * 114.48697 * 2 1 3 6 6 C 1.53004 * 109.47133 * 185.19335 * 5 2 1 7 7 H 1.09000 * 109.47251 * 54.85376 * 6 5 2 8 8 N 1.46899 * 109.46949 * 294.84989 * 6 5 2 9 9 C 1.46902 * 110.99838 * 155.34867 * 8 6 5 10 10 C 1.50696 * 109.47442 * 185.32691 * 9 8 6 11 11 O 1.21291 * 119.99931 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00320 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99956 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47108 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99990 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00406 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00335 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99607 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47097 * 90.00029 * 18 16 14 20 20 H 1.48498 * 109.47386 * 209.99701 * 18 16 14 21 21 H 1.48505 * 109.47299 * 330.00400 * 18 16 14 22 22 C 1.50693 * 109.46998 * 174.85328 * 6 5 2 23 23 C 1.38240 * 120.00444 * 79.72728 * 22 6 5 24 24 C 1.38231 * 120.00487 * 179.78855 * 23 22 6 25 25 C 1.38235 * 119.99577 * 0.43762 * 24 23 22 26 26 C 1.38234 * 120.00322 * 359.81462 * 25 24 23 27 27 C 1.38233 * 119.99857 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47104 * 305.51487 * 1 2 3 29 29 H 1.09007 * 109.47082 * 65.51110 * 1 2 3 30 30 H 1.08999 * 109.47060 * 185.51115 * 1 2 3 31 31 H 1.08993 * 109.47313 * 65.19429 * 5 2 1 32 32 H 1.08998 * 109.46948 * 305.18832 * 5 2 1 33 33 H 1.00895 * 111.00451 * 279.30244 * 8 6 5 34 34 H 1.09000 * 109.47112 * 65.32192 * 9 8 6 35 35 H 1.09009 * 109.47297 * 305.32718 * 9 8 6 36 36 H 0.97001 * 119.99759 * 359.97438 * 12 10 9 37 37 H 1.08993 * 109.47589 * 300.00032 * 13 12 10 38 38 H 1.09001 * 109.47015 * 60.00399 * 13 12 10 39 39 H 0.96998 * 119.99963 * 180.02562 * 17 16 14 40 40 H 1.08002 * 119.99583 * 359.97438 * 23 22 6 41 41 H 1.07993 * 120.00413 * 180.27526 * 24 23 22 42 42 H 1.08009 * 119.99630 * 179.83372 * 25 24 23 43 43 H 1.08004 * 119.99947 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.00085 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1886 -0.7357 1.6152 6 6 3.6996 -0.7007 1.8534 7 1 4.0610 0.3219 1.7450 8 7 4.3701 -1.5637 0.8719 9 6 5.7611 -1.1404 0.6620 10 6 6.3753 -1.9621 -0.4418 11 8 5.7187 -2.8160 -0.9993 12 7 7.6541 -1.7481 -0.8096 13 6 8.2512 -2.5474 -1.8824 14 6 9.6781 -2.1130 -2.0978 15 1 10.0983 -1.3211 -1.4954 16 6 10.4476 -2.7273 -3.0630 17 7 11.6929 -2.3486 -3.2505 18 14 9.7211 -4.0974 -4.1042 19 1 9.1000 -3.5174 -5.3221 20 1 10.7965 -5.0423 -4.4992 21 1 8.6893 -4.8217 -3.3194 22 6 4.0003 -1.1948 3.2450 23 6 4.0198 -2.5519 3.5075 24 6 4.3000 -3.0053 4.7829 25 6 4.5517 -2.1013 5.7980 26 6 4.5270 -0.7441 5.5367 27 6 4.2512 -0.2908 4.2603 28 1 -0.3633 0.5970 0.8365 29 1 -0.3633 0.4260 -0.9353 30 1 -0.3633 -1.0229 0.0987 31 1 1.8419 -1.7688 1.6332 32 1 1.6842 -0.1694 2.3982 33 1 4.3252 -2.5321 1.1514 34 1 6.3278 -1.2858 1.5817 35 1 5.7823 -0.0862 0.3852 36 1 8.1790 -1.0649 -0.3640 37 1 8.2298 -3.6013 -1.6054 38 1 7.6848 -2.4019 -2.8023 39 1 12.2341 -2.7805 -3.9298 40 1 3.8192 -3.2580 2.7153 41 1 4.3196 -4.0656 4.9870 42 1 4.7679 -2.4555 6.7952 43 1 4.7233 -0.0378 6.3299 44 1 4.2315 0.7696 4.0562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775548688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = -102.898518 kcal Electronic energy + Delta-G solvation = -27230.227721 eV Core-core repulsion = 23273.890130 eV Total energy + Delta-G solvation = -3956.337591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.92905 -40.20360 -37.77539 -37.49316 -36.74601 -36.09630 -34.40354 -33.04930 -31.80831 -30.80319 -30.36489 -29.93779 -27.10773 -24.75132 -23.94484 -23.30166 -21.61441 -21.49571 -19.68961 -19.20725 -18.48106 -17.69798 -17.38500 -17.26913 -16.86024 -16.82124 -16.62236 -16.17627 -15.99183 -15.98592 -15.35452 -15.03838 -14.86997 -14.47916 -14.33573 -14.21675 -14.01654 -13.93385 -13.86734 -13.81496 -13.31055 -13.17640 -13.01147 -12.85028 -12.80567 -12.69821 -12.68619 -12.28017 -11.93492 -11.87058 -11.76381 -11.66054 -11.30108 -10.92366 -10.80563 -9.92349 -9.84726 -9.74584 -9.53528 -8.40620 -6.47292 -0.78802 0.38507 0.48238 1.32230 1.34064 1.47205 1.76016 2.06706 2.26549 2.29415 2.77458 2.94700 2.98289 3.09784 3.34114 3.65746 3.82360 3.86641 3.93685 4.11340 4.14536 4.15075 4.27042 4.29550 4.32452 4.39459 4.47111 4.61748 4.70055 4.78950 4.81966 4.99977 5.03139 5.04864 5.13410 5.25615 5.46717 5.53698 5.55527 5.62580 5.79948 6.08275 6.09749 6.20007 6.53360 6.86935 7.15801 7.44568 8.74176 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.003137 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.017122 B = 8922.913558 C =10815.288100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.416 3.584 3 O -0.989 6.989 4 O -0.969 6.969 5 C -0.585 4.585 6 C 0.134 3.866 7 H 0.109 0.891 8 N -0.680 5.680 9 C 0.050 3.950 10 C 0.496 3.504 11 O -0.578 6.578 12 N -0.709 5.709 13 C 0.233 3.767 14 C -0.546 4.546 15 H 0.060 0.940 16 C 0.027 3.973 17 N -0.931 5.931 18 Si 0.937 3.063 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.261 1.261 22 C -0.112 4.112 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.117 4.117 28 H 0.156 0.844 29 H 0.129 0.871 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.357 0.643 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.408 0.592 37 H 0.013 0.987 38 H 0.007 0.993 39 H 0.273 0.727 40 H 0.122 0.878 41 H 0.133 0.867 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.561 4.839 21.585 33.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.603 3.397 3 O -0.987 6.987 4 O -0.966 6.966 5 C -0.716 4.716 6 C 0.023 3.977 7 H 0.126 0.874 8 N -0.314 5.314 9 C -0.082 4.082 10 C 0.283 3.717 11 O -0.457 6.457 12 N -0.360 5.360 13 C 0.109 3.891 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.173 4.173 17 N -0.569 5.569 18 Si 0.761 3.239 19 H -0.192 1.192 20 H -0.195 1.195 21 H -0.186 1.186 22 C -0.115 4.115 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.140 4.140 27 C -0.135 4.135 28 H 0.174 0.826 29 H 0.148 0.852 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.190 0.810 33 H 0.179 0.821 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.244 0.756 37 H 0.031 0.969 38 H 0.025 0.975 39 H 0.082 0.918 40 H 0.140 0.860 41 H 0.151 0.849 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.495 4.840 19.816 32.651 hybrid contribution 0.443 -0.961 0.656 1.245 sum -25.052 3.879 20.472 32.584 Atomic orbital electron populations 1.30195 1.22934 1.13597 1.13078 1.07657 0.79475 0.74428 0.78121 1.93519 1.81057 1.36721 1.87353 1.93627 1.80059 1.67119 1.55770 1.30302 1.02492 1.16069 1.22716 1.20294 0.91769 0.98563 0.87052 0.87352 1.60368 1.14816 1.08478 1.47765 1.21801 0.89815 1.00317 0.96304 1.21243 0.81386 0.84144 0.84950 1.90655 1.61970 1.36180 1.56936 1.46007 1.12531 1.39475 1.37962 1.19065 0.92179 0.91304 0.86529 1.21295 0.95559 1.21056 1.20500 0.92190 1.25588 0.94921 0.99054 0.97785 1.69975 1.08771 1.43552 1.34651 0.85864 0.78729 0.79697 0.79630 1.19219 1.19503 1.18579 1.20360 1.01415 0.94083 0.95593 1.21112 1.00710 0.95283 0.97596 1.21374 0.99323 1.00743 0.92917 1.21502 0.99289 0.93598 0.99994 1.21473 0.99129 0.96200 0.97209 1.21332 0.99209 1.00290 0.92686 0.82585 0.85209 0.83218 0.82841 0.80959 0.82089 0.89458 0.86444 0.75636 0.96889 0.97541 0.91813 0.85968 0.84881 0.84328 0.83953 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.58 10.62 113.37 1.20 -3.38 16 2 S 2.42 43.07 5.22 -56.49 -0.30 42.78 16 3 O -0.99 -24.83 18.02 -127.37 -2.30 -27.13 16 4 O -0.97 -29.56 17.46 -127.37 -2.22 -31.78 16 5 C -0.59 -6.51 5.44 71.98 0.39 -6.12 16 6 C 0.13 2.32 2.20 44.17 0.10 2.41 16 7 H 0.11 1.79 7.52 -2.39 -0.02 1.78 16 8 N -0.68 -17.31 4.93 -499.46 -2.46 -19.77 16 9 C 0.05 1.37 5.99 85.56 0.51 1.88 16 10 C 0.50 19.77 7.88 87.66 0.69 20.46 16 11 O -0.58 -27.97 16.32 -3.06 -0.05 -28.02 16 12 N -0.71 -29.99 5.55 -466.79 -2.59 -32.58 16 13 C 0.23 12.05 4.50 85.63 0.38 12.43 16 14 C -0.55 -31.22 9.83 25.60 0.25 -30.96 16 15 H 0.06 3.57 7.84 -2.91 -0.02 3.55 16 16 C 0.03 1.56 5.47 84.66 0.46 2.02 16 17 N -0.93 -56.78 13.96 21.45 0.30 -56.48 16 18 Si 0.94 45.69 27.47 68.60 1.88 47.58 16 19 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.26 -12.70 6.54 99.48 0.65 -12.05 16 22 C -0.11 -1.74 4.76 -19.87 -0.09 -1.84 16 23 C -0.13 -2.11 9.12 22.27 0.20 -1.91 16 24 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 25 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 26 C -0.12 -1.51 10.05 22.27 0.22 -1.29 16 27 C -0.12 -1.56 9.67 22.27 0.22 -1.35 16 28 H 0.16 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.17 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.36 9.01 6.27 -89.70 -0.56 8.45 16 34 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 35 H 0.12 2.88 7.92 -2.38 -0.02 2.87 16 36 H 0.41 15.00 8.32 -92.71 -0.77 14.22 16 37 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 38 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 39 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.12 2.00 6.53 -2.91 -0.02 1.98 16 41 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 44 H 0.14 1.38 8.04 -2.91 -0.02 1.36 16 Total: -1.00 -89.82 383.77 -3.10 -92.92 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -0.36 Total: 23.18 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.99 Total: -10.69 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -4.75 Total: -108.83 kcal Atomic # 8 Polarization: -82.36 SS G_CDS: -4.57 Total: -86.93 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.58 kcal Atomic # 16 Polarization: 43.07 SS G_CDS: -0.30 Total: 42.78 kcal Total: -89.82 -3.10 -92.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775548688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.979 kcal (2) G-P(sol) polarization free energy of solvation -89.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds