Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46896 * 110.99907 * 2 1 4 4 C 1.46893 * 111.00184 * 123.95554 * 2 1 3 5 5 C 1.50702 * 109.47015 * 169.99976 * 4 2 1 6 6 O 1.21272 * 119.99999 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99934 * 180.02562 * 5 4 2 8 8 N 1.40101 * 120.00193 * 179.97438 * 7 5 4 9 9 C 1.34777 * 120.00190 * 179.97438 * 8 7 5 10 10 O 1.21590 * 120.00065 * 179.97438 * 9 8 7 11 11 N 1.34776 * 119.99665 * 0.27466 * 9 8 7 12 12 C 1.40138 * 119.99796 * 174.03813 * 11 9 8 13 13 C 1.38698 * 120.07712 * 335.23602 * 12 11 9 14 14 C 1.38198 * 120.02226 * 179.76650 * 13 12 11 15 15 C 1.38542 * 120.17178 * 0.50457 * 14 13 12 16 16 F 1.35103 * 119.91956 * 179.77162 * 15 14 13 17 17 C 1.38342 * 120.15470 * 359.74581 * 15 14 13 18 18 C 1.38743 * 119.97516 * 359.97438 * 17 15 14 19 19 O 1.35777 * 120.08230 * 180.02562 * 18 17 15 20 20 C 1.34803 * 117.00542 * 5.19127 * 19 18 17 21 21 H 1.07996 * 119.99768 * 354.98451 * 20 19 18 22 22 C 1.38630 * 120.00112 * 174.97728 * 20 19 18 23 23 N 1.31573 * 119.99981 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47330 * 89.99422 * 24 22 20 26 26 H 1.48498 * 109.47267 * 209.99676 * 24 22 20 27 27 H 1.48501 * 109.46889 * 329.99695 * 24 22 20 28 28 H 1.09000 * 109.46505 * 296.04285 * 1 2 3 29 29 H 1.09000 * 109.47201 * 56.04219 * 1 2 3 30 30 H 1.08997 * 109.46886 * 176.04649 * 1 2 3 31 31 H 1.09004 * 109.47291 * 183.95743 * 3 2 1 32 32 H 1.09002 * 109.47422 * 303.95625 * 3 2 1 33 33 H 1.08998 * 109.47421 * 63.95764 * 3 2 1 34 34 H 1.09002 * 109.47306 * 49.99848 * 4 2 1 35 35 H 1.09004 * 109.47239 * 289.99912 * 4 2 1 36 36 H 0.97000 * 120.00014 * 359.97438 * 7 5 4 37 37 H 0.97000 * 119.99793 * 359.97438 * 8 7 5 38 38 H 0.97002 * 120.00664 * 354.04055 * 11 9 8 39 39 H 1.08000 * 119.98444 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.90917 * 180.22386 * 14 13 12 41 41 H 1.07998 * 120.00850 * 180.02562 * 17 15 14 42 42 H 0.97005 * 120.00160 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4819 -0.9524 0.9727 6 8 4.0468 -0.4930 0.0029 7 7 4.1831 -1.6308 1.9025 8 7 5.5648 -1.8046 1.7491 9 6 6.2661 -2.4825 2.6792 10 8 7.4652 -2.6338 2.5458 11 7 5.6373 -2.9979 3.7541 12 6 6.3409 -3.8076 4.6559 13 6 7.4681 -4.4983 4.2365 14 6 8.1638 -5.2927 5.1280 15 6 7.7325 -5.4102 6.4393 16 9 8.4139 -6.1919 7.3053 17 6 6.6061 -4.7286 6.8640 18 6 5.9062 -3.9248 5.9758 19 8 4.8007 -3.2544 6.3905 20 6 4.4974 -3.3262 7.7020 21 1 5.0749 -3.9629 8.3557 22 6 3.4442 -2.5825 8.2116 23 7 3.1485 -2.6522 9.4918 24 14 2.4449 -1.4816 7.0808 25 1 1.3050 -2.2512 6.5211 26 1 1.9285 -0.3208 7.8496 27 1 3.3069 -0.9975 5.9727 28 1 -0.3632 0.4512 0.9234 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9164 -0.8524 33 1 1.7045 1.8723 0.9233 34 1 1.5091 -1.7407 1.1756 35 1 1.7976 -0.2248 2.0628 36 1 3.7312 -1.9986 2.6780 37 1 6.0167 -1.4371 0.9734 38 1 4.6978 -2.8084 3.9036 39 1 7.8042 -4.4126 3.2137 40 1 9.0434 -5.8269 4.8003 41 1 6.2722 -4.8216 7.8869 42 1 2.4113 -2.1322 9.8484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775671614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = -42.447921 kcal Electronic energy + Delta-G solvation = -29387.263437 eV Core-core repulsion = 24899.626755 eV Total energy + Delta-G solvation = -4487.636682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.34477 -40.98247 -40.02482 -39.00013 -37.23667 -36.62460 -35.73418 -34.32650 -32.60335 -31.69639 -29.69015 -28.75015 -28.14813 -27.85436 -25.54871 -23.22579 -23.00280 -22.00367 -21.16627 -20.86885 -19.21333 -18.45864 -18.12937 -17.83253 -16.82263 -16.37107 -16.24010 -15.79174 -15.65270 -15.48280 -15.18288 -15.10173 -14.93261 -14.66812 -14.53633 -14.23607 -13.97802 -13.63150 -13.45560 -13.36775 -12.79242 -12.59440 -12.52692 -12.41506 -12.09953 -12.05809 -11.99736 -11.70918 -11.37902 -11.12448 -10.95477 -10.60802 -10.45646 -10.17305 -9.94862 -9.72083 -9.11046 -8.79112 -8.59442 -8.06626 -7.32560 -6.63468 -4.31141 1.52967 1.66121 1.92106 2.17265 2.85285 2.97031 3.01894 3.04389 3.07387 3.53020 3.96826 4.03699 4.15850 4.40208 4.66579 4.71411 4.83470 4.85322 4.89768 4.90830 5.02647 5.26358 5.28131 5.37027 5.49503 5.60535 5.75203 5.78876 5.88159 6.10149 6.20983 6.38827 6.49570 6.58095 6.69909 6.75369 6.78441 6.84530 7.07901 7.35480 7.51304 7.55737 7.77658 8.02272 8.37191 8.68855 9.22252 10.43913 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.003709 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.075547 B = 7546.501747 C =10120.846384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.529 5.529 3 C 0.014 3.986 4 C 0.041 3.959 5 C 0.518 3.482 6 O -0.516 6.516 7 N -0.532 5.532 8 N -0.529 5.529 9 C 0.712 3.288 10 O -0.559 6.559 11 N -0.663 5.663 12 C 0.077 3.923 13 C -0.060 4.060 14 C -0.216 4.216 15 C 0.128 3.872 16 F -0.148 7.148 17 C -0.241 4.241 18 C 0.163 3.837 19 O -0.213 6.213 20 C -0.391 4.391 21 H 0.110 0.890 22 C 0.066 3.934 23 N -0.870 5.870 24 Si 0.903 3.097 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.262 1.262 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.422 0.578 37 H 0.443 0.557 38 H 0.403 0.597 39 H 0.151 0.849 40 H 0.127 0.873 41 H 0.151 0.849 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 3.046 -14.571 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.253 5.253 3 C -0.134 4.134 4 C -0.092 4.092 5 C 0.304 3.696 6 O -0.389 6.389 7 N -0.285 5.285 8 N -0.286 5.286 9 C 0.412 3.588 10 O -0.432 6.432 11 N -0.311 5.311 12 C -0.017 4.017 13 C -0.081 4.081 14 C -0.236 4.236 15 C 0.108 3.892 16 F -0.127 7.127 17 C -0.262 4.262 18 C 0.108 3.892 19 O -0.118 6.118 20 C -0.466 4.466 21 H 0.127 0.873 22 C -0.139 4.139 23 N -0.507 5.507 24 Si 0.728 3.272 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.186 1.186 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.263 0.737 37 H 0.290 0.710 38 H 0.239 0.761 39 H 0.169 0.831 40 H 0.145 0.855 41 H 0.168 0.832 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.811 3.188 -15.591 16.364 hybrid contribution -1.244 0.803 1.070 1.827 sum -5.055 3.991 -14.521 15.885 Atomic orbital electron populations 1.22450 0.86116 1.02764 1.01084 1.61631 1.07962 1.14857 1.40875 1.22623 1.03007 0.87442 1.00282 1.21930 0.90866 1.01827 0.94577 1.20751 0.89269 0.77708 0.81912 1.90706 1.70870 1.47943 1.29395 1.45017 0.97705 1.58681 1.27127 1.44538 0.95658 1.61071 1.27364 1.15633 0.84644 0.78584 0.79890 1.90982 1.11246 1.63771 1.77231 1.42205 1.13656 1.51337 1.23930 1.16659 0.98260 1.00227 0.86582 1.20806 0.93240 0.93405 1.00620 1.20575 1.04077 1.06761 0.92167 1.17481 0.91802 0.92516 0.87407 1.91435 1.79013 1.72564 1.69638 1.20966 0.98496 1.04095 1.02662 1.18346 0.87806 0.92937 0.90066 1.83455 1.36537 1.63111 1.28683 1.20752 1.17132 1.28665 0.80054 0.87277 1.24465 0.96668 0.96906 0.95823 1.69637 1.29128 1.40289 1.11619 0.86233 0.80079 0.79975 0.80883 1.19578 1.20546 1.18612 0.95195 0.90713 0.90938 0.89327 0.91133 0.95758 0.86833 0.90837 0.73675 0.71029 0.76096 0.83146 0.85540 0.83197 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.07 0.57 0.73 16 2 N -0.53 -4.79 4.76 -252.72 -1.20 -5.99 16 3 C 0.01 0.13 9.21 60.06 0.55 0.68 16 4 C 0.04 0.33 5.45 -4.98 -0.03 0.30 16 5 C 0.52 5.53 7.67 -10.98 -0.08 5.44 16 6 O -0.52 -7.10 14.15 5.56 0.08 -7.02 16 7 N -0.53 -5.52 6.25 31.22 0.20 -5.32 16 8 N -0.53 -6.61 6.26 27.63 0.17 -6.44 16 9 C 0.71 10.89 8.48 -86.92 -0.74 10.15 16 10 O -0.56 -10.02 14.35 5.29 0.08 -9.94 16 11 N -0.66 -10.38 5.25 -14.07 -0.07 -10.46 16 12 C 0.08 1.42 6.45 -83.44 -0.54 0.88 16 13 C -0.06 -1.05 8.71 -39.43 -0.34 -1.39 16 14 C -0.22 -3.67 10.02 -39.48 -0.40 -4.07 16 15 C 0.13 2.40 7.29 -39.43 -0.29 2.11 16 16 F -0.15 -2.71 17.26 2.25 0.04 -2.68 16 17 C -0.24 -4.95 9.14 -39.36 -0.36 -5.31 16 18 C 0.16 3.36 6.66 -38.94 -0.26 3.10 16 19 O -0.21 -4.78 8.00 0.04 0.00 -4.78 16 20 C -0.39 -9.87 9.94 30.88 0.31 -9.57 16 21 H 0.11 2.89 5.44 -52.49 -0.29 2.60 16 22 C 0.07 1.66 5.49 -17.52 -0.10 1.57 16 23 N -0.87 -23.20 13.96 55.48 0.77 -22.43 16 24 Si 0.90 18.50 28.62 -169.99 -4.86 13.63 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 26 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 31 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 32 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.11 0.66 8.06 -51.93 -0.42 0.24 16 35 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.42 3.66 6.72 -182.60 -1.23 2.44 16 37 H 0.44 5.46 8.10 -182.60 -1.48 3.98 16 38 H 0.40 5.59 6.29 -40.82 -0.26 5.34 16 39 H 0.15 2.54 5.78 -52.49 -0.30 2.24 16 40 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 41 H 0.15 3.23 5.63 -52.49 -0.30 2.93 16 42 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 361.32 15.07 5.44 5.44 Total: -1.00 -30.32 361.32 -7.71 -38.03 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.66 Total: 13.33 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.69 Total: 4.62 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.13 Total: -50.64 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.15 Total: -21.75 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -4.86 Total: 13.63 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.32 -7.71 -38.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775671614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.419 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds