Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46896 * 110.99907 * 2 1 4 4 C 1.46893 * 111.00184 * 123.95554 * 2 1 3 5 5 C 1.50702 * 109.47015 * 169.99976 * 4 2 1 6 6 O 1.21272 * 119.99999 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99934 * 180.02562 * 5 4 2 8 8 N 1.40101 * 120.00193 * 179.97438 * 7 5 4 9 9 C 1.34777 * 120.00190 * 179.97438 * 8 7 5 10 10 O 1.21590 * 120.00065 * 179.97438 * 9 8 7 11 11 N 1.34776 * 119.99665 * 0.27466 * 9 8 7 12 12 C 1.40138 * 119.99796 * 174.03813 * 11 9 8 13 13 C 1.38698 * 120.07712 * 335.23602 * 12 11 9 14 14 C 1.38198 * 120.02226 * 179.76650 * 13 12 11 15 15 C 1.38542 * 120.17178 * 0.50457 * 14 13 12 16 16 F 1.35103 * 119.91956 * 179.77162 * 15 14 13 17 17 C 1.38342 * 120.15470 * 359.74581 * 15 14 13 18 18 C 1.38743 * 119.97516 * 359.97438 * 17 15 14 19 19 O 1.35777 * 120.08230 * 180.02562 * 18 17 15 20 20 C 1.34803 * 117.00542 * 5.19127 * 19 18 17 21 21 H 1.07996 * 119.99768 * 354.98451 * 20 19 18 22 22 C 1.38630 * 120.00112 * 174.97728 * 20 19 18 23 23 N 1.31573 * 119.99981 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47330 * 89.99422 * 24 22 20 26 26 H 1.48498 * 109.47267 * 209.99676 * 24 22 20 27 27 H 1.48501 * 109.46889 * 329.99695 * 24 22 20 28 28 H 1.09000 * 109.46505 * 296.04285 * 1 2 3 29 29 H 1.09000 * 109.47201 * 56.04219 * 1 2 3 30 30 H 1.08997 * 109.46886 * 176.04649 * 1 2 3 31 31 H 1.09004 * 109.47291 * 183.95743 * 3 2 1 32 32 H 1.09002 * 109.47422 * 303.95625 * 3 2 1 33 33 H 1.08998 * 109.47421 * 63.95764 * 3 2 1 34 34 H 1.09002 * 109.47306 * 49.99848 * 4 2 1 35 35 H 1.09004 * 109.47239 * 289.99912 * 4 2 1 36 36 H 0.97000 * 120.00014 * 359.97438 * 7 5 4 37 37 H 0.97000 * 119.99793 * 359.97438 * 8 7 5 38 38 H 0.97002 * 120.00664 * 354.04055 * 11 9 8 39 39 H 1.08000 * 119.98444 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.90917 * 180.22386 * 14 13 12 41 41 H 1.07998 * 120.00850 * 180.02562 * 17 15 14 42 42 H 0.97005 * 120.00160 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4819 -0.9524 0.9727 6 8 4.0468 -0.4930 0.0029 7 7 4.1831 -1.6308 1.9025 8 7 5.5648 -1.8046 1.7491 9 6 6.2661 -2.4825 2.6792 10 8 7.4652 -2.6338 2.5458 11 7 5.6373 -2.9979 3.7541 12 6 6.3409 -3.8076 4.6559 13 6 7.4681 -4.4983 4.2365 14 6 8.1638 -5.2927 5.1280 15 6 7.7325 -5.4102 6.4393 16 9 8.4139 -6.1919 7.3053 17 6 6.6061 -4.7286 6.8640 18 6 5.9062 -3.9248 5.9758 19 8 4.8007 -3.2544 6.3905 20 6 4.4974 -3.3262 7.7020 21 1 5.0749 -3.9629 8.3557 22 6 3.4442 -2.5825 8.2116 23 7 3.1485 -2.6522 9.4918 24 14 2.4449 -1.4816 7.0808 25 1 1.3050 -2.2512 6.5211 26 1 1.9285 -0.3208 7.8496 27 1 3.3069 -0.9975 5.9727 28 1 -0.3632 0.4512 0.9234 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9164 -0.8524 33 1 1.7045 1.8723 0.9233 34 1 1.5091 -1.7407 1.1756 35 1 1.7976 -0.2248 2.0628 36 1 3.7312 -1.9986 2.6780 37 1 6.0167 -1.4371 0.9734 38 1 4.6978 -2.8084 3.9036 39 1 7.8042 -4.4126 3.2137 40 1 9.0434 -5.8269 4.8003 41 1 6.2722 -4.8216 7.8869 42 1 2.4113 -2.1322 9.8484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775671614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = -65.405704 kcal Electronic energy + Delta-G solvation = -29388.258961 eV Core-core repulsion = 24899.626755 eV Total energy + Delta-G solvation = -4488.632206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -49.84393 -42.18916 -41.12197 -40.38465 -38.30300 -37.81658 -36.75856 -35.66553 -34.45582 -32.66898 -31.22871 -30.04945 -29.01655 -28.43048 -27.33473 -24.53271 -23.80917 -23.49465 -22.22829 -21.97099 -20.39450 -20.11480 -19.55048 -19.00797 -18.03377 -17.53333 -17.21317 -17.08688 -16.86341 -16.63161 -16.46121 -16.34082 -15.87810 -15.82808 -15.72215 -15.52239 -15.42615 -15.24026 -14.94588 -14.26597 -14.16868 -13.91141 -13.63374 -13.34671 -13.22857 -13.05461 -12.71712 -12.67027 -12.62888 -12.44009 -12.32912 -12.15502 -11.73277 -11.62965 -11.32172 -11.07126 -10.90543 -9.70308 -9.57307 -9.34527 -8.80871 -8.49032 -6.24424 0.12634 0.39021 0.62356 1.32101 1.34181 1.42062 1.52976 1.67463 1.82380 2.28880 2.62356 2.74678 2.91563 3.03832 3.27335 3.37815 3.77410 3.88746 4.13856 4.14564 4.24801 4.30382 4.36158 4.44619 4.49981 4.71008 4.73934 4.80913 4.98582 5.07502 5.09704 5.14515 5.18815 5.30931 5.36193 5.46281 5.63556 5.81291 5.84742 6.01358 6.05671 6.18626 6.46151 6.81836 7.00579 7.23216 7.41824 8.61692 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.003709 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.075547 B = 7546.501747 C =10120.846384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.017 3.983 4 C 0.041 3.959 5 C 0.519 3.481 6 O -0.549 6.549 7 N -0.525 5.525 8 N -0.520 5.520 9 C 0.717 3.283 10 O -0.585 6.585 11 N -0.660 5.660 12 C 0.091 3.909 13 C -0.060 4.060 14 C -0.189 4.189 15 C 0.117 3.883 16 F -0.147 7.147 17 C -0.253 4.253 18 C 0.141 3.859 19 O -0.219 6.219 20 C -0.402 4.402 21 H 0.078 0.922 22 C 0.009 3.991 23 N -0.921 5.921 24 Si 0.969 3.031 25 H -0.249 1.249 26 H -0.281 1.281 27 H -0.243 1.243 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.140 0.860 35 H 0.093 0.907 36 H 0.432 0.568 37 H 0.446 0.554 38 H 0.413 0.587 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.128 0.872 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.661 3.390 -17.029 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.131 4.131 4 C -0.091 4.091 5 C 0.306 3.694 6 O -0.424 6.424 7 N -0.280 5.280 8 N -0.275 5.275 9 C 0.417 3.583 10 O -0.461 6.461 11 N -0.309 5.309 12 C -0.004 4.004 13 C -0.081 4.081 14 C -0.209 4.209 15 C 0.097 3.903 16 F -0.125 7.125 17 C -0.274 4.274 18 C 0.089 3.911 19 O -0.125 6.125 20 C -0.478 4.478 21 H 0.096 0.904 22 C -0.190 4.190 23 N -0.561 5.561 24 Si 0.789 3.211 25 H -0.173 1.173 26 H -0.207 1.207 27 H -0.166 1.166 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.158 0.842 35 H 0.111 0.889 36 H 0.275 0.725 37 H 0.293 0.707 38 H 0.250 0.750 39 H 0.182 0.818 40 H 0.178 0.822 41 H 0.146 0.854 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.589 3.514 -18.085 18.986 hybrid contribution -0.818 0.591 1.717 1.992 sum -5.408 4.104 -16.368 17.720 Atomic orbital electron populations 1.22496 0.84488 1.03646 1.01666 1.61611 1.09456 1.14702 1.41723 1.22539 1.01508 0.88040 1.01013 1.22081 0.88574 1.03397 0.95059 1.21392 0.90286 0.76589 0.81093 1.90704 1.71691 1.49219 1.30816 1.45131 0.96393 1.58770 1.27682 1.44317 0.96913 1.59840 1.26469 1.15558 0.84355 0.78567 0.79852 1.90958 1.12480 1.64821 1.77847 1.42115 1.14061 1.51088 1.23598 1.16742 0.98080 0.99672 0.85924 1.21046 0.92750 0.93007 1.01273 1.20951 1.04108 1.05027 0.90809 1.17533 0.91597 0.92889 0.88275 1.91437 1.78820 1.72473 1.69795 1.20968 0.99516 1.04916 1.01952 1.18607 0.88063 0.93405 0.91063 1.83402 1.37784 1.64485 1.26863 1.20620 1.17361 1.28708 0.81086 0.90435 1.25412 0.97766 0.98382 0.97425 1.69754 1.30416 1.42103 1.13798 0.85248 0.78997 0.77746 0.79089 1.17310 1.20701 1.16647 0.94376 0.90419 0.89884 0.91723 0.90548 0.94941 0.84188 0.88947 0.72507 0.70717 0.74969 0.81818 0.82202 0.85400 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.57 127.69 1.22 1.47 16 2 N -0.55 -8.58 4.76 -953.47 -4.53 -13.11 16 3 C 0.02 0.28 9.21 127.69 1.18 1.45 16 4 C 0.04 0.52 5.45 85.56 0.47 0.99 16 5 C 0.52 9.85 7.67 87.66 0.67 10.52 16 6 O -0.55 -14.38 14.15 -3.01 -0.04 -14.42 16 7 N -0.53 -9.47 6.25 -173.54 -1.09 -10.56 16 8 N -0.52 -11.87 6.26 -184.74 -1.16 -13.03 16 9 C 0.72 20.28 8.48 179.05 1.52 21.80 16 10 O -0.59 -19.72 14.35 -4.00 -0.06 -19.78 16 11 N -0.66 -19.17 5.25 -316.70 -1.66 -20.83 16 12 C 0.09 3.19 6.45 38.22 0.25 3.44 16 13 C -0.06 -1.94 8.71 22.37 0.19 -1.75 16 14 C -0.19 -5.93 10.02 22.33 0.22 -5.71 16 15 C 0.12 4.29 7.29 22.37 0.16 4.45 16 16 F -0.15 -5.28 17.26 44.97 0.78 -4.50 16 17 C -0.25 -10.59 9.14 22.42 0.20 -10.38 16 18 C 0.14 5.81 6.66 22.68 0.15 5.96 16 19 O -0.22 -9.86 8.00 -22.77 -0.18 -10.04 16 20 C -0.40 -21.04 9.94 67.91 0.68 -20.36 16 21 H 0.08 4.41 5.44 -2.91 -0.02 4.40 16 22 C 0.01 0.47 5.49 84.83 0.47 0.94 16 23 N -0.92 -50.96 13.96 21.61 0.30 -50.65 16 24 Si 0.97 37.22 28.62 68.60 1.96 39.19 16 25 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 26 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.24 -8.46 7.11 99.48 0.71 -7.75 16 28 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 30 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 31 H 0.06 1.38 5.88 -2.38 -0.01 1.36 16 32 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 33 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.14 1.04 8.06 -2.39 -0.02 1.02 16 35 H 0.09 0.88 8.12 -2.38 -0.02 0.86 16 36 H 0.43 6.06 6.72 -213.32 -1.43 4.63 16 37 H 0.45 10.23 8.10 -213.32 -1.73 8.50 16 38 H 0.41 10.37 6.29 -92.71 -0.58 9.79 16 39 H 0.16 5.01 5.78 -2.91 -0.02 5.00 16 40 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 41 H 0.13 5.91 5.63 -2.91 -0.02 5.89 16 42 H 0.29 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -67.46 361.32 -0.91 -68.38 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -2.62 Total: 36.55 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 7.38 Total: 12.82 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -8.14 Total: -108.18 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.28 Total: -44.24 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.78 Total: -4.50 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 1.96 Total: 39.19 kcal Total: -67.46 -0.91 -68.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775671614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.973 kcal (2) G-P(sol) polarization free energy of solvation -67.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds