Wall clock time and date at job start Sat Apr 11 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00444 * 2 1 4 4 C 1.53003 * 109.47400 * 180.02562 * 3 2 1 5 5 S 1.81394 * 109.47028 * 179.97438 * 4 3 2 6 6 O 1.42099 * 109.47421 * 296.38894 * 5 4 3 7 7 C 1.81407 * 102.99954 * 179.97438 * 5 4 3 8 8 C 1.50702 * 109.46950 * 180.02562 * 7 5 4 9 9 C 1.38300 * 119.96382 * 269.72253 * 8 7 5 10 10 C 1.38259 * 120.13891 * 179.72651 * 9 8 7 11 11 C 1.38138 * 120.06884 * 0.55599 * 10 9 8 12 12 C 1.38847 * 119.93003 * 359.71956 * 11 10 9 13 13 N 1.39948 * 120.07059 * 180.02562 * 12 11 10 14 14 C 1.34769 * 119.99885 * 324.89027 * 13 12 11 15 15 O 1.21592 * 120.00407 * 4.62768 * 14 13 12 16 16 N 1.34780 * 120.00076 * 184.61814 * 14 13 12 17 17 C 1.46498 * 120.00137 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47192 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99618 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00274 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99971 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00147 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47009 * 90.00464 * 22 20 18 24 24 H 1.48496 * 109.47190 * 210.00493 * 22 20 18 25 25 H 1.48502 * 109.47093 * 330.00511 * 22 20 18 26 26 C 1.38090 * 119.96358 * 90.00350 * 8 7 5 27 27 H 1.08999 * 109.46966 * 299.99810 * 1 2 3 28 28 H 1.08994 * 109.47149 * 59.99713 * 1 2 3 29 29 H 1.09001 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46891 * 59.99940 * 3 2 1 31 31 H 1.09005 * 109.47025 * 300.00203 * 3 2 1 32 32 H 1.09005 * 109.47023 * 299.99990 * 4 3 2 33 33 H 1.08997 * 109.46773 * 59.99876 * 4 3 2 34 34 H 1.08999 * 109.47063 * 300.00260 * 7 5 4 35 35 H 1.08996 * 109.46681 * 59.99805 * 7 5 4 36 36 H 1.08000 * 119.92816 * 0.02562 * 9 8 7 37 37 H 1.07997 * 119.96906 * 180.27870 * 10 9 8 38 38 H 1.08001 * 120.03821 * 179.74516 * 11 10 9 39 39 H 0.97000 * 119.99663 * 144.89715 * 13 12 11 40 40 H 0.96996 * 119.99469 * 0.02562 * 16 14 13 41 41 H 1.09002 * 109.46987 * 300.00102 * 17 16 14 42 42 H 1.08994 * 109.47277 * 60.00293 * 17 16 14 43 43 H 0.97000 * 119.99990 * 180.02562 * 21 20 18 44 44 H 1.08005 * 120.03391 * 359.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 16 4.2733 2.8416 -0.0014 6 8 3.9215 3.5163 -1.2015 7 6 6.0541 2.4954 -0.0013 8 6 6.8183 3.7943 -0.0013 9 6 7.1736 4.3867 -1.1994 10 6 7.8698 5.5812 -1.2036 11 6 8.2227 6.1809 -0.0103 12 6 7.8724 5.5858 1.1943 13 7 8.2279 6.1910 2.4050 14 6 9.3965 6.8541 2.5092 15 8 10.1028 6.9990 1.5301 16 7 9.7823 7.3570 3.6987 17 6 11.0524 8.0783 3.8119 18 6 11.2466 8.5332 5.2354 19 1 10.4989 8.3072 5.9812 20 6 12.3792 9.2370 5.5858 21 7 13.2899 9.5118 4.6776 22 14 12.6195 9.8016 7.3502 23 1 13.3386 8.7497 8.1128 24 1 13.4155 11.0551 7.3647 25 1 11.2955 10.0487 7.9756 26 6 7.1680 4.3887 1.1951 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8575 0.6434 0.8892 33 1 3.8567 0.6437 -0.8908 34 1 6.3127 1.9221 0.8889 35 1 6.3126 1.9213 -0.8910 36 1 6.9025 3.9177 -2.1337 37 1 8.1420 6.0437 -2.1409 38 1 8.7701 7.1119 -0.0142 39 1 7.6332 6.1331 3.1691 40 1 9.2190 7.2412 4.4798 41 1 11.8717 7.4183 3.5267 42 1 11.0378 8.9455 3.1518 43 1 14.0869 10.0066 4.9242 44 1 6.8938 3.9234 2.1304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785816841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:15 Heat of formation + Delta-G solvation = -87.036596 kcal Electronic energy + Delta-G solvation = -25495.664532 eV Core-core repulsion = 21540.014765 eV Total energy + Delta-G solvation = -3955.649767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25389 -38.55156 -38.35679 -36.07037 -34.85800 -34.13912 -32.68557 -32.22722 -32.06053 -29.69030 -27.41582 -26.98255 -26.81858 -23.62208 -23.21853 -22.27344 -21.56078 -20.05503 -18.24632 -18.01169 -17.29601 -17.07010 -16.68294 -16.15022 -16.03492 -15.68941 -15.48731 -15.28852 -14.92821 -14.78549 -14.47777 -14.42205 -14.12975 -13.70724 -13.40490 -13.24464 -13.02655 -12.76661 -12.51124 -12.26552 -12.02666 -11.97726 -11.90937 -11.75477 -11.63951 -11.28635 -10.99475 -10.93189 -10.67185 -10.33833 -10.19640 -10.07215 -9.45867 -9.42745 -8.94676 -8.78646 -8.47308 -8.11281 -7.72852 -6.19486 -4.26702 0.76921 1.40917 1.60379 2.20791 3.11144 3.22546 3.23377 3.29393 3.31717 3.53974 3.64250 3.99874 4.29095 4.36031 4.42089 4.46044 4.64311 4.81689 4.85887 4.86881 4.87613 5.05550 5.16909 5.18796 5.19027 5.22999 5.32816 5.38029 5.44917 5.61322 5.76044 6.00002 6.40116 6.44188 6.60622 6.61571 6.70397 7.01273 7.20205 7.37129 7.46938 7.49241 7.79428 7.95888 8.65586 8.80595 9.16093 9.40548 10.90615 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.001713 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.800448 B =16340.147581 C =17342.372406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.390 6.390 3 C 0.082 3.918 4 C -0.461 4.461 5 S 1.258 4.742 6 O -0.832 6.832 7 C -0.397 4.397 8 C -0.059 4.059 9 C -0.133 4.133 10 C -0.097 4.097 11 C -0.117 4.117 12 C 0.183 3.817 13 N -0.696 5.696 14 C 0.690 3.310 15 O -0.582 6.582 16 N -0.721 5.721 17 C 0.265 3.735 18 C -0.544 4.544 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.149 4.149 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.146 0.854 39 H 0.404 0.596 40 H 0.389 0.611 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.266 0.734 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.973 -17.181 -5.499 30.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.310 6.310 3 C 0.005 3.995 4 C -0.596 4.596 5 S 1.456 4.544 6 O -0.828 6.828 7 C -0.533 4.533 8 C -0.061 4.061 9 C -0.154 4.154 10 C -0.116 4.116 11 C -0.138 4.138 12 C 0.086 3.914 13 N -0.344 5.344 14 C 0.390 3.610 15 O -0.460 6.460 16 N -0.373 5.373 17 C 0.145 3.855 18 C -0.583 4.583 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.171 4.171 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.115 0.885 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.163 0.837 39 H 0.239 0.761 40 H 0.221 0.779 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.412 -16.205 -6.353 29.173 hybrid contribution 0.244 -0.892 -0.161 0.939 sum -23.168 -17.097 -6.514 29.521 Atomic orbital electron populations 1.22786 0.80761 1.02985 1.00276 1.87915 1.19897 1.27678 1.95467 1.21984 0.91077 0.85448 1.01030 1.27947 1.01888 1.21190 1.08621 1.71100 0.86181 0.85059 1.12052 1.93145 1.77839 1.60954 1.50823 1.26572 1.17407 1.00806 1.08543 1.18633 0.99779 0.94434 0.93285 1.20939 1.00425 0.96865 0.97137 1.21031 0.97377 0.95129 0.98030 1.21509 1.00029 1.01591 0.90691 1.17480 0.96705 0.91563 0.85630 1.42791 1.21400 1.57354 1.12827 1.16167 0.80647 0.79026 0.85124 1.90883 1.54806 1.63625 1.36695 1.45774 1.25689 1.58184 1.07631 1.19058 0.78233 0.91176 0.97073 1.21200 1.06074 1.37049 0.93940 0.91850 1.24943 0.95469 0.95524 0.98029 1.69976 1.09630 1.39076 1.33476 0.86395 0.78294 0.78231 0.83854 1.20467 1.20998 1.19752 1.20690 1.04175 0.94441 0.97837 0.93667 0.93964 0.89456 0.91925 0.92840 0.85624 0.88929 0.85312 0.88483 0.86639 0.85767 0.83685 0.76114 0.77876 0.95504 0.95475 0.92396 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.28 10.70 -35.23 -0.38 -3.65 16 3 C 0.08 0.56 5.95 37.16 0.22 0.78 16 4 C -0.46 -2.72 6.29 37.16 0.23 -2.49 16 5 S 1.26 8.18 13.14 -107.50 -1.41 6.77 16 6 O -0.83 -10.79 18.14 -35.23 -0.64 -11.43 16 7 C -0.40 -2.83 6.05 36.01 0.22 -2.61 16 8 C -0.06 -0.64 5.14 -104.65 -0.54 -1.17 16 9 C -0.13 -1.68 9.70 -39.55 -0.38 -2.06 16 10 C -0.10 -1.32 10.04 -39.61 -0.40 -1.72 16 11 C -0.12 -1.84 8.70 -39.39 -0.34 -2.18 16 12 C 0.18 2.59 6.30 -83.69 -0.53 2.06 16 13 N -0.70 -9.91 5.34 -14.22 -0.08 -9.99 16 14 C 0.69 13.50 8.41 -86.92 -0.73 12.77 16 15 O -0.58 -13.79 13.78 5.28 0.07 -13.72 16 16 N -0.72 -14.52 5.55 -66.42 -0.37 -14.89 16 17 C 0.27 6.85 5.43 -5.19 -0.03 6.82 16 18 C -0.54 -14.34 9.28 -34.44 -0.32 -14.66 16 19 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.88 -25.61 13.29 55.43 0.74 -24.87 16 22 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 C -0.15 -1.61 9.62 -39.39 -0.38 -1.99 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.13 0.52 8.08 -51.92 -0.42 0.10 16 35 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.15 2.62 6.22 -52.49 -0.33 2.29 16 39 H 0.40 4.10 8.84 -40.82 -0.36 3.74 16 40 H 0.39 6.49 8.34 -40.82 -0.34 6.15 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -38.40 391.08 -9.62 -48.03 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.47 Total: 6.05 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.96 Total: -3.54 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.29 Total: -49.75 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.94 Total: -28.80 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 8.18 SS G_CDS: -1.41 Total: 6.77 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.40 -9.62 -48.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785816841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.011 kcal (2) G-P(sol) polarization free energy of solvation -38.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds