Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00444 * 2 1 4 4 C 1.53003 * 109.47400 * 180.02562 * 3 2 1 5 5 S 1.81394 * 109.47028 * 179.97438 * 4 3 2 6 6 O 1.42099 * 109.47421 * 296.38894 * 5 4 3 7 7 C 1.81407 * 102.99954 * 179.97438 * 5 4 3 8 8 C 1.50702 * 109.46950 * 180.02562 * 7 5 4 9 9 C 1.38300 * 119.96382 * 269.72253 * 8 7 5 10 10 C 1.38259 * 120.13891 * 179.72651 * 9 8 7 11 11 C 1.38138 * 120.06884 * 0.55599 * 10 9 8 12 12 C 1.38847 * 119.93003 * 359.71956 * 11 10 9 13 13 N 1.39948 * 120.07059 * 180.02562 * 12 11 10 14 14 C 1.34769 * 119.99885 * 324.89027 * 13 12 11 15 15 O 1.21592 * 120.00407 * 4.62768 * 14 13 12 16 16 N 1.34780 * 120.00076 * 184.61814 * 14 13 12 17 17 C 1.46498 * 120.00137 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47192 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99618 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00274 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99971 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00147 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47009 * 90.00464 * 22 20 18 24 24 H 1.48496 * 109.47190 * 210.00493 * 22 20 18 25 25 H 1.48502 * 109.47093 * 330.00511 * 22 20 18 26 26 C 1.38090 * 119.96358 * 90.00350 * 8 7 5 27 27 H 1.08999 * 109.46966 * 299.99810 * 1 2 3 28 28 H 1.08994 * 109.47149 * 59.99713 * 1 2 3 29 29 H 1.09001 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46891 * 59.99940 * 3 2 1 31 31 H 1.09005 * 109.47025 * 300.00203 * 3 2 1 32 32 H 1.09005 * 109.47023 * 299.99990 * 4 3 2 33 33 H 1.08997 * 109.46773 * 59.99876 * 4 3 2 34 34 H 1.08999 * 109.47063 * 300.00260 * 7 5 4 35 35 H 1.08996 * 109.46681 * 59.99805 * 7 5 4 36 36 H 1.08000 * 119.92816 * 0.02562 * 9 8 7 37 37 H 1.07997 * 119.96906 * 180.27870 * 10 9 8 38 38 H 1.08001 * 120.03821 * 179.74516 * 11 10 9 39 39 H 0.97000 * 119.99663 * 144.89715 * 13 12 11 40 40 H 0.96996 * 119.99469 * 0.02562 * 16 14 13 41 41 H 1.09002 * 109.46987 * 300.00102 * 17 16 14 42 42 H 1.08994 * 109.47277 * 60.00293 * 17 16 14 43 43 H 0.97000 * 119.99990 * 180.02562 * 21 20 18 44 44 H 1.08005 * 120.03391 * 359.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 16 4.2733 2.8416 -0.0014 6 8 3.9215 3.5163 -1.2015 7 6 6.0541 2.4954 -0.0013 8 6 6.8183 3.7943 -0.0013 9 6 7.1736 4.3867 -1.1994 10 6 7.8698 5.5812 -1.2036 11 6 8.2227 6.1809 -0.0103 12 6 7.8724 5.5858 1.1943 13 7 8.2279 6.1910 2.4050 14 6 9.3965 6.8541 2.5092 15 8 10.1028 6.9990 1.5301 16 7 9.7823 7.3570 3.6987 17 6 11.0524 8.0783 3.8119 18 6 11.2466 8.5332 5.2354 19 1 10.4989 8.3072 5.9812 20 6 12.3792 9.2370 5.5858 21 7 13.2899 9.5118 4.6776 22 14 12.6195 9.8016 7.3502 23 1 13.3386 8.7497 8.1128 24 1 13.4155 11.0551 7.3647 25 1 11.2955 10.0487 7.9756 26 6 7.1680 4.3887 1.1951 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8575 0.6434 0.8892 33 1 3.8567 0.6437 -0.8908 34 1 6.3127 1.9221 0.8889 35 1 6.3126 1.9213 -0.8910 36 1 6.9025 3.9177 -2.1337 37 1 8.1420 6.0437 -2.1409 38 1 8.7701 7.1119 -0.0142 39 1 7.6332 6.1331 3.1691 40 1 9.2190 7.2412 4.4798 41 1 11.8717 7.4183 3.5267 42 1 11.0378 8.9455 3.1518 43 1 14.0869 10.0066 4.9242 44 1 6.8938 3.9234 2.1304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785816841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -117.618542 kcal Electronic energy + Delta-G solvation = -25496.990665 eV Core-core repulsion = 21540.014765 eV Total energy + Delta-G solvation = -3956.975899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58457 -39.79832 -38.85376 -36.87346 -36.37565 -35.78937 -34.39213 -33.40981 -32.53065 -30.90787 -28.95830 -28.05873 -27.31410 -25.03373 -24.13186 -23.34078 -22.93828 -21.48492 -19.80095 -18.73603 -18.36247 -17.86703 -17.63127 -17.24780 -17.15568 -16.74294 -16.60696 -16.25281 -16.06865 -15.90514 -15.71385 -15.25929 -15.01708 -14.93786 -14.67366 -14.19287 -14.07030 -13.99057 -13.93790 -13.54701 -12.96316 -12.90431 -12.86439 -12.76157 -12.69178 -12.42114 -12.23199 -12.18729 -12.16114 -11.53618 -11.45336 -11.29301 -11.02070 -10.78088 -10.67413 -9.90757 -9.80275 -9.22408 -8.92046 -8.26091 -6.42462 0.04249 0.37669 0.76885 1.46515 1.49184 1.59830 1.67628 1.75771 2.15123 2.41668 2.70276 2.88618 3.07650 3.09582 3.44477 3.66388 3.91544 3.93740 3.98638 4.21608 4.28381 4.37691 4.42597 4.50745 4.51313 4.55346 4.67787 4.74203 4.84019 4.85227 4.97221 5.04090 5.13075 5.28175 5.37734 5.39836 5.47636 5.58020 5.59913 5.69467 5.85711 6.09903 6.16520 6.24205 6.69060 7.22860 7.28909 7.64539 8.86059 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.001713 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.800448 B =16340.147581 C =17342.372406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.414 6.414 3 C 0.070 3.930 4 C -0.454 4.454 5 S 1.312 4.688 6 O -0.903 6.903 7 C -0.399 4.399 8 C -0.055 4.055 9 C -0.145 4.145 10 C -0.108 4.108 11 C -0.148 4.148 12 C 0.159 3.841 13 N -0.669 5.669 14 C 0.690 3.310 15 O -0.630 6.630 16 N -0.713 5.713 17 C 0.284 3.716 18 C -0.554 4.554 19 H 0.087 0.913 20 C 0.004 3.996 21 N -0.932 5.932 22 Si 0.986 3.014 23 H -0.271 1.271 24 H -0.287 1.287 25 H -0.254 1.254 26 C -0.128 4.128 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.034 0.966 32 H 0.160 0.840 33 H 0.077 0.923 34 H 0.174 0.826 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.427 0.573 40 H 0.409 0.591 41 H -0.013 1.013 42 H -0.013 1.013 43 H 0.268 0.732 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.338 -19.624 -2.298 32.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.334 6.334 3 C -0.007 4.007 4 C -0.591 4.591 5 S 1.512 4.488 6 O -0.898 6.898 7 C -0.535 4.535 8 C -0.057 4.057 9 C -0.165 4.165 10 C -0.127 4.127 11 C -0.170 4.170 12 C 0.063 3.937 13 N -0.319 5.319 14 C 0.390 3.610 15 O -0.511 6.511 16 N -0.367 5.367 17 C 0.161 3.839 18 C -0.591 4.591 19 H 0.105 0.895 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.809 3.191 23 H -0.196 1.196 24 H -0.213 1.213 25 H -0.177 1.177 26 C -0.149 4.149 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.052 0.948 32 H 0.178 0.822 33 H 0.096 0.904 34 H 0.192 0.808 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.127 0.873 39 H 0.267 0.733 40 H 0.245 0.755 41 H 0.005 0.995 42 H 0.005 0.995 43 H 0.077 0.923 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -25.871 -18.676 -3.138 32.062 hybrid contribution 0.868 -0.279 -1.279 1.571 sum -25.003 -18.955 -4.417 31.685 Atomic orbital electron populations 1.22972 0.79515 1.03974 1.01071 1.87868 1.21434 1.28455 1.95636 1.22174 0.91633 0.85242 1.01678 1.27880 1.01391 1.20202 1.09587 1.70323 0.84866 0.84280 1.09315 1.93039 1.79336 1.64222 1.53221 1.26673 1.16887 0.99137 1.10822 1.19031 0.98776 0.95461 0.92443 1.21187 1.00223 0.96451 0.98609 1.21106 0.97984 0.95923 0.97681 1.21357 1.01675 1.01278 0.92660 1.17728 0.98230 0.93139 0.84578 1.42343 1.19719 1.55947 1.13930 1.16300 0.81693 0.78972 0.84038 1.90868 1.56803 1.65190 1.38195 1.45281 1.24410 1.58092 1.08899 1.18462 0.79576 0.89323 0.96575 1.21608 1.06686 1.36670 0.94185 0.89452 1.26056 0.95033 0.95463 1.03030 1.70148 1.10426 1.40155 1.36281 0.85140 0.78905 0.77432 0.77619 1.19648 1.21270 1.17739 1.21113 1.01477 0.92406 0.99943 0.92010 0.94051 0.88481 0.88878 0.94752 0.82245 0.90413 0.80792 0.88629 0.86145 0.85354 0.87315 0.73314 0.75499 0.99456 0.99475 0.92326 0.80006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.43 16 2 O -0.41 -6.11 10.70 -148.98 -1.59 -7.70 16 3 C 0.07 0.80 5.95 71.98 0.43 1.23 16 4 C -0.45 -3.88 6.29 71.98 0.45 -3.43 16 5 S 1.31 13.16 13.14 -56.49 -0.74 12.42 16 6 O -0.90 -22.65 18.14 -148.98 -2.70 -25.35 16 7 C -0.40 -4.02 6.05 71.24 0.43 -3.59 16 8 C -0.06 -1.03 5.14 -19.88 -0.10 -1.13 16 9 C -0.14 -3.56 9.70 22.29 0.22 -3.34 16 10 C -0.11 -3.10 10.04 22.25 0.22 -2.88 16 11 C -0.15 -4.92 8.70 22.39 0.19 -4.72 16 12 C 0.16 4.35 6.30 38.15 0.24 4.59 16 13 N -0.67 -18.27 5.34 -317.17 -1.69 -19.97 16 14 C 0.69 27.55 8.41 179.06 1.51 29.05 16 15 O -0.63 -31.66 13.78 -4.01 -0.06 -31.72 16 16 N -0.71 -28.97 5.55 -482.30 -2.68 -31.65 16 17 C 0.28 15.27 5.43 85.63 0.46 15.73 16 18 C -0.55 -29.20 9.28 25.60 0.24 -28.96 16 19 H 0.09 4.09 7.60 -2.91 -0.02 4.06 16 20 C 0.00 0.20 5.46 84.65 0.46 0.67 16 21 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 22 Si 0.99 41.26 29.54 68.60 2.03 43.29 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 24 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 26 C -0.13 -2.30 9.62 22.39 0.22 -2.08 16 27 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.16 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.17 0.24 8.08 -2.39 -0.02 0.22 16 35 H 0.09 1.12 8.08 -2.39 -0.02 1.10 16 36 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 38 H 0.11 4.36 6.22 -2.91 -0.02 4.34 16 39 H 0.43 7.39 8.84 -92.71 -0.82 6.57 16 40 H 0.41 13.04 8.34 -92.71 -0.77 12.27 16 41 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 43 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -90.54 391.08 -1.50 -92.04 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.57 Total: 21.34 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 6.22 Total: 2.55 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -4.09 Total: -106.87 kcal Atomic # 8 Polarization: -60.42 SS G_CDS: -4.35 Total: -64.77 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 13.16 SS G_CDS: -0.74 Total: 12.42 kcal Total: -90.54 -1.50 -92.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785816841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.574 kcal (2) G-P(sol) polarization free energy of solvation -90.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds