Wall clock time and date at job start Sat Apr 11 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00321 * 2 1 4 4 C 1.52998 * 109.47443 * 179.97438 * 3 2 1 5 5 S 1.81398 * 109.47177 * 180.02562 * 4 3 2 6 6 O 1.42100 * 109.47411 * 63.61251 * 5 4 3 7 7 C 1.81399 * 103.00201 * 180.02562 * 5 4 3 8 8 C 1.50698 * 109.47446 * 179.97438 * 7 5 4 9 9 C 1.38302 * 119.96388 * 269.97407 * 8 7 5 10 10 C 1.38262 * 120.13819 * 180.02562 * 9 8 7 11 11 C 1.38141 * 120.06823 * 0.02562 * 10 9 8 12 12 C 1.38842 * 119.92843 * 0.02562 * 11 10 9 13 13 N 1.39955 * 120.06608 * 180.02562 * 12 11 10 14 14 C 1.34776 * 119.99750 * 324.88795 * 13 12 11 15 15 O 1.21583 * 120.00553 * 4.61898 * 14 13 12 16 16 N 1.34776 * 119.99593 * 184.62536 * 14 13 12 17 17 C 1.46505 * 119.99773 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47060 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99589 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99908 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99764 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00275 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46660 * 90.00002 * 22 20 18 24 24 H 1.48489 * 109.47488 * 210.00404 * 22 20 18 25 25 H 1.48503 * 109.47104 * 330.00791 * 22 20 18 26 26 C 1.38093 * 119.96497 * 89.99867 * 8 7 5 27 27 H 1.09002 * 109.47196 * 300.00090 * 1 2 3 28 28 H 1.09000 * 109.46721 * 59.99983 * 1 2 3 29 29 H 1.08999 * 109.47451 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47427 * 59.99462 * 3 2 1 31 31 H 1.08998 * 109.47183 * 300.00226 * 3 2 1 32 32 H 1.08997 * 109.46963 * 60.00099 * 4 3 2 33 33 H 1.08998 * 109.47289 * 300.00373 * 4 3 2 34 34 H 1.09001 * 109.47233 * 59.99185 * 7 5 4 35 35 H 1.08999 * 109.46832 * 300.00087 * 7 5 4 36 36 H 1.07996 * 119.93262 * 0.02756 * 9 8 7 37 37 H 1.07995 * 119.96282 * 179.97438 * 10 9 8 38 38 H 1.08000 * 120.03368 * 180.02562 * 11 10 9 39 39 H 0.96996 * 119.99904 * 144.88332 * 13 12 11 40 40 H 0.97001 * 120.00359 * 359.97438 * 16 14 13 41 41 H 1.09001 * 109.46822 * 299.99407 * 17 16 14 42 42 H 1.08991 * 109.47342 * 59.99599 * 17 16 14 43 43 H 0.97002 * 119.99642 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.03077 * 0.25375 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 16 4.2733 2.8417 0.0014 6 8 3.9215 3.5164 1.2016 7 6 6.0540 2.4956 0.0013 8 6 6.8182 3.7945 0.0013 9 6 7.1689 4.3895 -1.1969 10 6 7.8706 5.5809 -1.2011 11 6 8.2239 6.1803 -0.0077 12 6 7.8742 5.5848 1.1967 13 7 8.2303 6.1898 2.4075 14 6 9.3990 6.8530 2.5113 15 8 10.1048 6.9980 1.5320 16 7 9.7853 7.3554 3.7008 17 6 11.0554 8.0768 3.8135 18 6 11.2497 8.5323 5.2369 19 1 10.5016 8.3074 5.9827 20 6 12.3819 9.2372 5.5866 21 7 12.5511 9.6352 6.8286 22 14 13.6753 9.6269 4.2965 23 1 13.3616 10.9311 3.6593 24 1 15.0111 9.6993 4.9408 25 1 13.6812 8.5601 3.2634 26 6 7.1680 4.3889 1.1976 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 3.8574 0.6435 -0.8891 33 1 3.8568 0.6438 0.8908 34 1 6.3126 1.9222 -0.8888 35 1 6.3125 1.9215 0.8910 36 1 6.8942 3.9227 -2.1312 37 1 8.1433 6.0429 -2.1384 38 1 8.7716 7.1111 -0.0117 39 1 7.6359 6.1318 3.1718 40 1 9.2220 7.2400 4.4820 41 1 11.8746 7.4169 3.5279 42 1 11.0405 8.9441 3.1537 43 1 13.3479 10.1307 7.0747 44 1 6.8977 3.9213 2.1329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785816843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:18 Heat of formation + Delta-G solvation = -83.230220 kcal Electronic energy + Delta-G solvation = -25609.864780 eV Core-core repulsion = 21654.380070 eV Total energy + Delta-G solvation = -3955.484710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34467 -38.65178 -38.36822 -36.08506 -34.96618 -34.24307 -32.69858 -32.27500 -32.07539 -29.84865 -27.74007 -27.25073 -26.86838 -23.63293 -23.03901 -22.31234 -21.38428 -20.17591 -18.38728 -18.01629 -17.30167 -17.11799 -16.69352 -16.41412 -16.18972 -15.75516 -15.52640 -15.33960 -14.89856 -14.81721 -14.56629 -14.35263 -14.21624 -13.78616 -13.40924 -13.32193 -13.11775 -12.74526 -12.54173 -12.42737 -12.38218 -12.20706 -11.94966 -11.77961 -11.72008 -11.34294 -11.02027 -10.81313 -10.69131 -10.20776 -10.15576 -9.98064 -9.62453 -9.49404 -9.02309 -8.81229 -8.48211 -8.31490 -7.86601 -6.23348 -4.26041 0.74159 1.35394 1.55823 2.18309 3.03383 3.21454 3.25994 3.33312 3.40978 3.49073 3.55902 3.92014 4.31688 4.34237 4.40014 4.43584 4.59900 4.74295 4.80242 4.84785 4.86946 5.01515 5.11990 5.13416 5.18112 5.18316 5.29176 5.36381 5.39620 5.55644 5.70383 5.94092 6.33480 6.38466 6.52250 6.60509 6.62678 6.69320 7.04883 7.11220 7.16323 7.28420 7.45668 8.21613 8.55122 8.74996 9.01586 9.36322 10.88519 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.001773 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.086607 B =15789.728913 C =16619.431095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.390 6.390 3 C 0.082 3.918 4 C -0.462 4.462 5 S 1.259 4.741 6 O -0.831 6.831 7 C -0.399 4.399 8 C -0.059 4.059 9 C -0.139 4.139 10 C -0.099 4.099 11 C -0.119 4.119 12 C 0.183 3.817 13 N -0.695 5.695 14 C 0.694 3.306 15 O -0.586 6.586 16 N -0.715 5.715 17 C 0.237 3.763 18 C -0.545 4.545 19 H 0.080 0.920 20 C 0.078 3.922 21 N -0.891 5.891 22 Si 0.877 3.123 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.143 4.143 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.406 0.594 40 H 0.395 0.605 41 H 0.026 0.974 42 H 0.021 0.979 43 H 0.268 0.732 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.541 -17.669 -20.429 35.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.310 6.310 3 C 0.005 3.995 4 C -0.597 4.597 5 S 1.456 4.544 6 O -0.826 6.826 7 C -0.534 4.534 8 C -0.061 4.061 9 C -0.159 4.159 10 C -0.117 4.117 11 C -0.140 4.140 12 C 0.087 3.913 13 N -0.343 5.343 14 C 0.394 3.606 15 O -0.464 6.464 16 N -0.367 5.367 17 C 0.115 3.885 18 C -0.583 4.583 19 H 0.098 0.902 20 C -0.125 4.125 21 N -0.529 5.529 22 Si 0.704 3.296 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.184 1.184 26 C -0.165 4.165 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.111 0.889 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.162 0.838 39 H 0.241 0.759 40 H 0.228 0.772 41 H 0.043 0.957 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.046 -16.699 -21.044 34.752 hybrid contribution 0.696 -0.950 2.252 2.542 sum -21.350 -17.649 -18.792 33.473 Atomic orbital electron populations 1.22788 0.80746 1.02995 1.00280 1.87916 1.19909 1.27665 1.95467 1.21980 0.91068 0.85461 1.01032 1.27945 1.01900 1.21188 1.08622 1.71063 0.86117 0.85074 1.12105 1.93159 1.77769 1.60927 1.50757 1.26588 1.17529 1.00772 1.08559 1.18659 0.99713 0.94425 0.93274 1.20931 1.01266 0.96835 0.96862 1.21041 0.97488 0.95353 0.97852 1.21496 1.00239 1.01551 0.90700 1.17494 0.96652 0.91485 0.85655 1.42780 1.21293 1.57069 1.13112 1.16105 0.80677 0.78897 0.84934 1.90859 1.54958 1.63910 1.36663 1.45460 1.25122 1.58036 1.08048 1.19432 0.79980 0.91216 0.97861 1.21072 1.07509 1.36986 0.92742 0.90247 1.24775 0.97700 0.94594 0.95481 1.69880 1.28288 1.37485 1.17206 0.86806 0.80983 0.79849 0.81999 1.19790 1.20867 1.18450 1.20743 1.03076 0.94477 0.98206 0.93929 0.93691 0.89449 0.92798 0.91970 0.85671 0.88882 0.85249 0.88522 0.85449 0.85472 0.83752 0.75922 0.77167 0.95659 0.96076 0.92211 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.23 10.70 -35.23 -0.38 -3.61 16 3 C 0.08 0.55 5.95 37.16 0.22 0.77 16 4 C -0.46 -2.63 6.29 37.16 0.23 -2.40 16 5 S 1.26 7.81 13.14 -107.50 -1.41 6.39 16 6 O -0.83 -10.72 18.14 -35.23 -0.64 -11.36 16 7 C -0.40 -2.70 6.05 36.00 0.22 -2.48 16 8 C -0.06 -0.60 5.14 -104.65 -0.54 -1.14 16 9 C -0.14 -1.27 9.70 -39.55 -0.38 -1.65 16 10 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 11 C -0.12 -1.77 8.70 -39.39 -0.34 -2.12 16 12 C 0.18 2.78 6.30 -83.69 -0.53 2.25 16 13 N -0.70 -10.94 5.34 -14.23 -0.08 -11.02 16 14 C 0.69 13.79 8.41 -86.92 -0.73 13.06 16 15 O -0.59 -13.45 13.78 5.29 0.07 -13.38 16 16 N -0.72 -14.74 5.55 -66.41 -0.37 -15.10 16 17 C 0.24 5.87 4.50 -5.19 -0.02 5.85 16 18 C -0.55 -15.00 9.83 -34.44 -0.34 -15.34 16 19 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 20 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 21 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 22 Si 0.88 21.43 27.47 -169.99 -4.67 16.77 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 26 C -0.14 -1.87 9.62 -39.40 -0.38 -2.25 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.13 0.43 8.08 -51.92 -0.42 0.01 16 35 H 0.10 0.74 8.08 -51.92 -0.42 0.32 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.14 2.47 6.22 -52.49 -0.33 2.14 16 39 H 0.41 5.20 8.84 -40.82 -0.36 4.84 16 40 H 0.39 7.15 8.34 -40.82 -0.34 6.81 16 41 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 42 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -38.93 387.48 -9.27 -48.20 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.44 Total: 6.58 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.97 Total: -3.57 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.33 Total: -51.85 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.94 Total: -28.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 7.81 SS G_CDS: -1.41 Total: 6.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.93 -9.27 -48.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785816843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.033 kcal (2) G-P(sol) polarization free energy of solvation -38.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds