Wall clock time and date at job start Sat Apr 11 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47091 * 2 1 4 4 C 1.34802 * 116.99768 * 179.97438 * 3 2 1 5 5 O 1.21558 * 120.00259 * 0.02562 * 4 3 2 6 6 C 1.47115 * 119.99788 * 179.97438 * 4 3 2 7 7 C 1.35293 * 123.14941 * 180.02562 * 6 4 3 8 8 S 1.70950 * 108.81393 * 179.70718 * 7 6 4 9 9 C 1.70769 * 91.13758 * 0.33341 * 8 7 6 10 10 C 1.50700 * 124.70448 * 179.97438 * 9 8 7 11 11 H 1.09002 * 110.36278 * 192.34819 * 10 9 8 12 12 C 1.54373 * 110.51395 * 69.93279 * 10 9 8 13 13 C 1.54257 * 105.06088 * 217.31368 * 12 10 9 14 14 C 1.54377 * 105.06196 * 0.02562 * 13 12 10 15 15 N 1.48558 * 104.59523 * 23.84822 * 14 13 12 16 16 C 1.46898 * 111.00327 * 200.96367 * 15 14 13 17 17 C 1.53006 * 109.47006 * 285.41736 * 16 15 14 18 18 H 1.09001 * 109.46998 * 59.99660 * 17 16 15 19 19 O 1.42895 * 109.47000 * 300.00187 * 17 16 15 20 20 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 21 21 H 1.08005 * 119.99819 * 0.02562 * 20 17 16 22 22 C 1.37875 * 120.00046 * 179.97438 * 20 17 16 23 23 N 1.31518 * 119.99944 * 0.02562 * 22 20 17 24 24 Si 1.86798 * 119.99979 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.46926 * 60.00512 * 24 22 20 26 26 H 1.48506 * 109.46961 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47227 * 300.00303 * 24 22 20 28 28 N 1.28621 * 110.58324 * 359.65848 * 9 8 7 29 29 H 1.09001 * 109.47105 * 59.99975 * 1 2 3 30 30 H 1.08998 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47484 * 300.00269 * 1 2 3 32 32 H 1.09001 * 109.46946 * 240.00212 * 2 1 3 33 33 H 1.09001 * 109.47105 * 120.00025 * 2 1 3 34 34 H 1.07993 * 125.59591 * 359.96160 * 7 6 4 35 35 H 1.09001 * 110.32499 * 336.21086 * 12 10 9 36 36 H 1.09003 * 110.32504 * 98.41730 * 12 10 9 37 37 H 1.09000 * 110.32195 * 118.89502 * 13 12 10 38 38 H 1.09002 * 110.32967 * 241.10244 * 13 12 10 39 39 H 1.09005 * 110.41050 * 265.07534 * 14 13 12 40 40 H 1.08998 * 110.41351 * 142.62782 * 14 13 12 41 41 H 1.09001 * 109.47062 * 165.41990 * 16 15 14 42 42 H 1.08993 * 109.47084 * 45.41437 * 16 15 14 43 43 H 0.96696 * 114.00485 * 299.99339 * 19 17 16 44 44 H 0.96997 * 119.99752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5455 0.0005 5 8 4.0909 0.5815 0.0005 6 6 3.9127 2.9050 0.0000 7 6 5.2422 3.1557 0.0000 8 16 5.4841 4.8479 -0.0090 9 6 3.7987 5.1232 -0.0023 10 6 3.1516 6.4841 -0.0049 11 1 2.0882 6.3989 0.2190 12 6 3.3610 7.1801 -1.3669 13 6 3.5794 8.6688 -1.0270 14 6 3.4843 8.7470 0.5119 15 7 3.8190 7.3767 0.9778 16 6 3.3067 7.1420 2.3344 17 6 4.1793 7.8888 3.3453 18 1 4.1552 8.9565 3.1274 19 8 5.5244 7.4147 3.2554 20 6 3.6535 7.6486 4.7370 21 1 2.7841 7.0253 4.8856 22 6 4.2828 8.2237 5.8206 23 7 5.3418 8.9823 5.6396 24 14 3.6314 7.9255 7.5457 25 1 3.6640 6.4707 7.8424 26 1 4.4790 8.6494 8.5269 27 1 2.2338 8.4185 7.6392 28 7 3.1584 4.0077 -0.0012 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 6.0226 2.4092 0.0009 35 1 4.2390 6.7735 -1.8688 36 1 2.4768 7.0605 -1.9931 37 1 4.5647 8.9929 -1.3620 38 1 2.8025 9.2800 -1.4862 39 1 2.4730 9.0159 0.8171 40 1 4.2040 9.4672 0.9011 41 1 3.3310 6.0743 2.5523 42 1 2.2808 7.5037 2.4030 43 1 5.6215 6.4701 3.4377 44 1 5.7843 9.3872 6.4019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809577826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:57 Heat of formation + Delta-G solvation = -86.785348 kcal Electronic energy + Delta-G solvation = -27484.327721 eV Core-core repulsion = 23528.688849 eV Total energy + Delta-G solvation = -3955.638872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79125 -39.60323 -38.51558 -36.67859 -35.55470 -32.12537 -32.01980 -31.73010 -31.43983 -28.56259 -27.72099 -26.25970 -24.61698 -23.53278 -22.50224 -21.48041 -20.60953 -20.16659 -19.78202 -18.76352 -17.14189 -16.87148 -16.72962 -16.38863 -15.93637 -15.24191 -14.88905 -14.62495 -14.47321 -14.21585 -14.05573 -13.84665 -13.68007 -13.26481 -13.02943 -12.83119 -12.48032 -12.40140 -12.14928 -11.90905 -11.88218 -11.75820 -11.62141 -11.10613 -11.08079 -10.91079 -10.81160 -10.79755 -10.69464 -10.61398 -10.40356 -10.08016 -9.77838 -9.59722 -9.07080 -8.90532 -8.57774 -8.25283 -7.94547 -6.01575 -4.19948 0.43669 1.26525 1.66641 1.71465 2.63454 3.07948 3.28409 3.33716 3.35744 3.74023 4.33294 4.47293 4.65239 4.70703 4.71306 4.76368 4.93566 5.03374 5.03867 5.08169 5.18217 5.26394 5.41856 5.45647 5.55619 5.59357 5.73175 5.79205 5.83735 5.84569 5.90008 5.98369 6.19570 6.21476 6.22633 6.35534 6.47886 6.74950 7.11408 7.26980 7.41791 7.72960 7.74584 7.84634 8.18047 8.83257 9.43667 9.59930 11.02355 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.003502 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.606736 B = 7993.647647 C = 9431.032813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.335 6.335 4 C 0.552 3.448 5 O -0.507 6.507 6 C 0.016 3.984 7 C -0.246 4.246 8 S 0.305 5.695 9 C 0.044 3.956 10 C 0.127 3.873 11 H 0.080 0.920 12 C -0.113 4.113 13 C -0.123 4.123 14 C 0.038 3.962 15 N -0.493 5.493 16 C 0.019 3.981 17 C 0.243 3.757 18 H 0.055 0.945 19 O -0.552 6.552 20 C -0.576 4.576 21 H 0.053 0.947 22 C 0.082 3.918 23 N -0.857 5.857 24 Si 0.888 3.112 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.276 1.276 28 N -0.433 5.433 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.189 0.811 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.035 0.965 43 H 0.340 0.660 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 -9.749 -16.263 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.251 6.251 4 C 0.394 3.606 5 O -0.396 6.396 6 C -0.119 4.119 7 C -0.389 4.389 8 S 0.565 5.435 9 C -0.236 4.236 10 C 0.015 3.985 11 H 0.098 0.902 12 C -0.152 4.152 13 C -0.161 4.161 14 C -0.090 4.090 15 N -0.217 5.217 16 C -0.109 4.109 17 C 0.185 3.815 18 H 0.073 0.927 19 O -0.353 6.353 20 C -0.615 4.615 21 H 0.071 0.929 22 C -0.124 4.124 23 N -0.493 5.493 24 Si 0.715 3.285 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.202 1.202 28 N -0.148 5.148 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.206 0.794 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.183 0.817 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.153 -8.731 -16.295 18.754 hybrid contribution -1.914 -1.869 1.400 3.019 sum -5.067 -10.600 -14.895 18.971 Atomic orbital electron populations 1.21795 0.92434 1.02833 1.03840 1.23083 0.95604 0.80116 1.02568 1.86706 1.23012 1.31893 1.83491 1.19877 0.80839 0.87603 0.72277 1.90861 1.60724 1.41262 1.46765 1.19098 0.89142 0.91305 1.12330 1.26903 1.00392 1.04645 1.07003 1.83334 1.07221 0.93089 1.59879 1.26939 0.95444 0.97613 1.03629 1.21138 0.96795 0.85873 0.94680 0.90188 1.22366 1.02283 0.95659 0.94935 1.22324 1.02389 0.95306 0.96051 1.23086 1.00357 0.91696 0.93875 1.65393 1.52435 1.02061 1.01845 1.23337 0.98238 1.01426 0.87927 1.19229 0.79094 0.93499 0.89679 0.92722 1.86560 1.29657 1.26158 1.92949 1.21608 1.14581 1.33056 0.92217 0.92881 1.24990 0.94360 0.94140 0.98955 1.70064 1.18449 1.30125 1.30653 0.86758 0.78935 0.78503 0.84304 1.20177 1.21152 1.20193 1.66961 1.37039 0.96580 1.14243 0.91402 0.90236 0.91246 0.91213 0.91107 0.79418 0.91036 0.90745 0.90694 0.91274 0.93634 0.89009 0.92057 0.94637 0.81673 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.63 6.20 37.16 0.23 0.86 16 3 O -0.34 -4.77 10.16 -40.77 -0.41 -5.19 16 4 C 0.55 8.46 7.94 34.33 0.27 8.73 16 5 O -0.51 -8.18 16.51 -19.31 -0.32 -8.50 16 6 C 0.02 0.25 6.71 -84.55 -0.57 -0.32 16 7 C -0.25 -3.24 10.62 29.68 0.32 -2.92 16 8 S 0.31 3.93 22.62 -107.50 -2.43 1.50 16 9 C 0.04 0.65 5.81 -13.62 -0.08 0.57 16 10 C 0.13 1.82 2.77 -67.21 -0.19 1.63 16 11 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 12 C -0.11 -1.27 6.54 -25.35 -0.17 -1.44 16 13 C -0.12 -1.36 7.00 -25.35 -0.18 -1.53 16 14 C 0.04 0.55 5.91 -2.18 -0.01 0.54 16 15 N -0.49 -8.13 4.72 -223.49 -1.05 -9.18 16 16 C 0.02 0.37 4.38 -3.82 -0.02 0.35 16 17 C 0.24 5.92 2.88 -27.88 -0.08 5.84 16 18 H 0.06 1.46 7.47 -51.93 -0.39 1.07 16 19 O -0.55 -13.76 12.60 -35.23 -0.44 -14.20 16 20 C -0.58 -15.58 8.76 -34.44 -0.30 -15.88 16 21 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 22 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 23 N -0.86 -24.93 12.84 55.43 0.71 -24.22 16 24 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 N -0.43 -6.96 10.60 -8.53 -0.09 -7.05 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.19 2.08 8.03 -52.49 -0.42 1.66 16 35 H 0.07 0.76 7.74 -51.93 -0.40 0.36 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.66 7.75 -51.93 -0.40 0.26 16 40 H 0.09 1.47 7.85 -51.93 -0.41 1.06 16 41 H 0.06 1.27 7.78 -51.93 -0.40 0.87 16 42 H 0.04 0.70 7.77 -51.93 -0.40 0.30 16 43 H 0.34 7.80 9.04 45.56 0.41 8.21 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -32.05 384.69 -9.50 -41.55 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.75 Total: 5.64 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.48 Total: -2.21 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.43 Total: -40.45 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -1.18 Total: -27.89 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.43 Total: 1.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.05 -9.50 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.234 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds