Wall clock time and date at job start Sat Apr 11 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47091 * 2 1 4 4 C 1.34802 * 116.99768 * 179.97438 * 3 2 1 5 5 O 1.21558 * 120.00259 * 0.02562 * 4 3 2 6 6 C 1.47115 * 119.99788 * 179.97438 * 4 3 2 7 7 C 1.35293 * 123.14941 * 180.02562 * 6 4 3 8 8 S 1.70950 * 108.81393 * 179.70718 * 7 6 4 9 9 C 1.70769 * 91.13758 * 0.33341 * 8 7 6 10 10 C 1.50700 * 124.70448 * 179.97438 * 9 8 7 11 11 H 1.09002 * 110.36278 * 192.34819 * 10 9 8 12 12 C 1.54373 * 110.51395 * 69.93279 * 10 9 8 13 13 C 1.54257 * 105.06088 * 217.31368 * 12 10 9 14 14 C 1.54377 * 105.06196 * 0.02562 * 13 12 10 15 15 N 1.48558 * 104.59523 * 23.84822 * 14 13 12 16 16 C 1.46898 * 111.00327 * 200.96367 * 15 14 13 17 17 C 1.53006 * 109.47006 * 285.41736 * 16 15 14 18 18 H 1.09001 * 109.46998 * 59.99660 * 17 16 15 19 19 O 1.42895 * 109.47000 * 300.00187 * 17 16 15 20 20 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 21 21 H 1.08005 * 119.99819 * 0.02562 * 20 17 16 22 22 C 1.37875 * 120.00046 * 179.97438 * 20 17 16 23 23 N 1.31518 * 119.99944 * 0.02562 * 22 20 17 24 24 Si 1.86798 * 119.99979 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.46926 * 60.00512 * 24 22 20 26 26 H 1.48506 * 109.46961 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47227 * 300.00303 * 24 22 20 28 28 N 1.28621 * 110.58324 * 359.65848 * 9 8 7 29 29 H 1.09001 * 109.47105 * 59.99975 * 1 2 3 30 30 H 1.08998 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47484 * 300.00269 * 1 2 3 32 32 H 1.09001 * 109.46946 * 240.00212 * 2 1 3 33 33 H 1.09001 * 109.47105 * 120.00025 * 2 1 3 34 34 H 1.07993 * 125.59591 * 359.96160 * 7 6 4 35 35 H 1.09001 * 110.32499 * 336.21086 * 12 10 9 36 36 H 1.09003 * 110.32504 * 98.41730 * 12 10 9 37 37 H 1.09000 * 110.32195 * 118.89502 * 13 12 10 38 38 H 1.09002 * 110.32967 * 241.10244 * 13 12 10 39 39 H 1.09005 * 110.41050 * 265.07534 * 14 13 12 40 40 H 1.08998 * 110.41351 * 142.62782 * 14 13 12 41 41 H 1.09001 * 109.47062 * 165.41990 * 16 15 14 42 42 H 1.08993 * 109.47084 * 45.41437 * 16 15 14 43 43 H 0.96696 * 114.00485 * 299.99339 * 19 17 16 44 44 H 0.96997 * 119.99752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5455 0.0005 5 8 4.0909 0.5815 0.0005 6 6 3.9127 2.9050 0.0000 7 6 5.2422 3.1557 0.0000 8 16 5.4841 4.8479 -0.0090 9 6 3.7987 5.1232 -0.0023 10 6 3.1516 6.4841 -0.0049 11 1 2.0882 6.3989 0.2190 12 6 3.3610 7.1801 -1.3669 13 6 3.5794 8.6688 -1.0270 14 6 3.4843 8.7470 0.5119 15 7 3.8190 7.3767 0.9778 16 6 3.3067 7.1420 2.3344 17 6 4.1793 7.8888 3.3453 18 1 4.1552 8.9565 3.1274 19 8 5.5244 7.4147 3.2554 20 6 3.6535 7.6486 4.7370 21 1 2.7841 7.0253 4.8856 22 6 4.2828 8.2237 5.8206 23 7 5.3418 8.9823 5.6396 24 14 3.6314 7.9255 7.5457 25 1 3.6640 6.4707 7.8424 26 1 4.4790 8.6494 8.5269 27 1 2.2338 8.4185 7.6392 28 7 3.1584 4.0077 -0.0012 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 6.0226 2.4092 0.0009 35 1 4.2390 6.7735 -1.8688 36 1 2.4768 7.0605 -1.9931 37 1 4.5647 8.9929 -1.3620 38 1 2.8025 9.2800 -1.4862 39 1 2.4730 9.0159 0.8171 40 1 4.2040 9.4672 0.9011 41 1 3.3310 6.0743 2.5523 42 1 2.2808 7.5037 2.4030 43 1 5.6215 6.4701 3.4377 44 1 5.7843 9.3872 6.4019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809577826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:56 Heat of formation + Delta-G solvation = -109.711439 kcal Electronic energy + Delta-G solvation = -27485.321871 eV Core-core repulsion = 23528.688849 eV Total energy + Delta-G solvation = -3956.633022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89858 -40.74703 -39.72149 -37.77469 -37.40192 -34.21997 -33.16818 -32.88860 -32.40717 -29.74282 -29.43126 -27.31236 -26.36603 -24.58225 -23.51822 -22.91686 -21.73187 -21.46806 -20.99513 -19.91714 -18.99194 -18.08334 -17.75668 -17.46781 -17.08621 -16.65454 -16.60450 -16.12831 -15.89224 -15.64171 -15.41090 -14.97783 -14.78966 -14.66728 -14.13129 -13.89826 -13.74259 -13.67504 -13.35425 -13.06515 -13.01942 -12.94262 -12.81613 -12.63723 -12.62002 -12.55976 -12.16102 -12.05069 -11.99083 -11.92347 -11.59919 -11.43754 -11.04294 -10.88279 -10.69177 -10.68592 -10.13234 -9.95733 -9.44004 -8.12981 -6.38290 -0.64632 0.20806 0.53130 0.61662 1.39855 1.40529 1.48682 1.63986 1.94097 2.37411 2.62499 3.12942 3.24508 3.55745 3.66959 3.89981 3.96061 4.00341 4.02925 4.04963 4.19015 4.28554 4.32835 4.34260 4.40574 4.56257 4.61892 4.64522 4.79791 4.85294 4.87541 4.95865 5.00868 5.03357 5.08060 5.17665 5.29797 5.31070 5.59296 5.73247 5.88726 5.96080 6.14090 6.25269 6.63931 6.73515 7.35302 7.61247 8.90695 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.003502 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.606736 B = 7993.647647 C = 9431.032813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.348 6.348 4 C 0.551 3.449 5 O -0.523 6.523 6 C -0.009 4.009 7 C -0.236 4.236 8 S 0.342 5.658 9 C 0.024 3.976 10 C 0.128 3.872 11 H 0.072 0.928 12 C -0.106 4.106 13 C -0.110 4.110 14 C 0.032 3.968 15 N -0.500 5.500 16 C 0.041 3.959 17 C 0.247 3.753 18 H 0.026 0.974 19 O -0.563 6.563 20 C -0.592 4.592 21 H 0.051 0.949 22 C 0.033 3.967 23 N -0.893 5.893 24 Si 0.952 3.048 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.269 1.269 28 N -0.452 5.452 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.208 0.792 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.032 0.968 43 H 0.348 0.652 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 -10.398 -17.232 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.264 6.264 4 C 0.394 3.606 5 O -0.413 6.413 6 C -0.144 4.144 7 C -0.379 4.379 8 S 0.602 5.398 9 C -0.255 4.255 10 C 0.016 3.984 11 H 0.089 0.911 12 C -0.146 4.146 13 C -0.148 4.148 14 C -0.096 4.096 15 N -0.224 5.224 16 C -0.088 4.088 17 C 0.189 3.811 18 H 0.044 0.956 19 O -0.365 6.365 20 C -0.631 4.631 21 H 0.070 0.930 22 C -0.170 4.170 23 N -0.530 5.530 24 Si 0.777 3.223 25 H -0.197 1.197 26 H -0.207 1.207 27 H -0.194 1.194 28 N -0.168 5.168 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.225 0.775 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.192 0.808 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.677 -9.385 -17.277 20.003 hybrid contribution -1.741 -1.688 1.678 2.949 sum -5.418 -11.073 -15.599 19.882 Atomic orbital electron populations 1.21826 0.90422 1.04543 1.03496 1.23429 0.97191 0.78581 1.03050 1.86701 1.22462 1.34145 1.83126 1.19959 0.81171 0.87566 0.71931 1.90835 1.61056 1.41650 1.47808 1.19259 0.89933 0.91268 1.13948 1.27192 1.00231 1.05434 1.05083 1.83189 1.05387 0.92502 1.58769 1.27045 0.96694 0.97503 1.04291 1.21187 0.96014 0.85609 0.95582 0.91062 1.22402 1.03772 0.95108 0.93277 1.22295 1.03937 0.95697 0.92900 1.23138 0.99604 0.90130 0.96700 1.65266 1.52796 1.03691 1.00661 1.22838 0.96939 0.99782 0.89228 1.19024 0.79504 0.92516 0.90060 0.95593 1.86506 1.30097 1.26871 1.93031 1.22005 1.14504 1.32714 0.93832 0.93043 1.25773 0.94534 0.93839 1.02903 1.70186 1.19785 1.31262 1.31757 0.85729 0.78526 0.78466 0.79546 1.19697 1.20734 1.19436 1.66924 1.38026 0.97069 1.14780 0.91337 0.87459 0.91936 0.90357 0.91024 0.77487 0.90040 0.88667 0.89770 0.88774 0.93755 0.91018 0.93034 0.95028 0.80821 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.29 71.98 0.74 -1.36 16 2 C 0.05 1.02 6.20 71.98 0.45 1.47 16 3 O -0.35 -9.89 10.16 -57.13 -0.58 -10.47 16 4 C 0.55 16.78 7.94 70.15 0.56 17.34 16 5 O -0.52 -16.69 16.51 19.65 0.32 -16.36 16 6 C -0.01 -0.29 6.71 40.53 0.27 -0.01 16 7 C -0.24 -5.93 10.62 67.14 0.71 -5.22 16 8 S 0.34 8.35 22.62 -56.49 -1.28 7.07 16 9 C 0.02 0.70 5.81 88.58 0.51 1.21 16 10 C 0.13 3.52 2.77 44.31 0.12 3.64 16 11 H 0.07 2.10 8.00 -2.39 -0.02 2.08 16 12 C -0.11 -2.13 6.54 31.49 0.21 -1.92 16 13 C -0.11 -2.17 7.00 31.49 0.22 -1.95 16 14 C 0.03 0.92 5.91 86.45 0.51 1.43 16 15 N -0.50 -16.35 4.72 -860.98 -4.06 -20.41 16 16 C 0.04 1.65 4.38 86.31 0.38 2.03 16 17 C 0.25 12.31 2.88 29.85 0.09 12.40 16 18 H 0.03 1.45 7.47 -2.39 -0.02 1.43 16 19 O -0.56 -28.48 12.60 -148.98 -1.88 -30.36 16 20 C -0.59 -32.43 8.76 25.60 0.22 -32.21 16 21 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 22 C 0.03 1.81 5.40 84.65 0.46 2.27 16 23 N -0.89 -52.62 12.84 21.45 0.28 -52.35 16 24 Si 0.95 43.37 29.54 68.60 2.03 45.39 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 28 N -0.45 -14.35 10.60 -180.90 -1.92 -16.26 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.21 4.23 8.03 -2.91 -0.02 4.21 16 35 H 0.08 1.49 7.74 -2.39 -0.02 1.47 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.27 7.75 -2.38 -0.02 1.26 16 40 H 0.07 2.34 7.85 -2.39 -0.02 2.32 16 41 H 0.05 2.16 7.78 -2.39 -0.02 2.14 16 42 H 0.03 1.28 7.77 -2.39 -0.02 1.26 16 43 H 0.35 16.13 9.04 -74.06 -0.67 15.46 16 44 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -69.40 384.69 -1.29 -70.69 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.35 Total: 23.94 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 5.45 Total: -0.90 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -5.70 Total: -89.02 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -2.13 Total: -57.18 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 8.35 SS G_CDS: -1.28 Total: 7.07 kcal Total: -69.40 -1.29 -70.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.022 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds