Wall clock time and date at job start Sat Apr 11 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47061 * 2 1 4 4 C 1.34797 * 117.00392 * 180.02562 * 3 2 1 5 5 O 1.21560 * 119.99507 * 359.97438 * 4 3 2 6 6 C 1.47109 * 120.00496 * 179.97438 * 4 3 2 7 7 C 1.35283 * 123.15899 * 179.97438 * 6 4 3 8 8 S 1.70941 * 108.82180 * 180.02562 * 7 6 4 9 9 C 1.70759 * 91.13825 * 0.02562 * 8 7 6 10 10 C 1.50702 * 124.71014 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.90748 * 165.72545 * 10 9 8 12 12 C 1.53995 * 109.91675 * 286.82873 * 10 9 8 13 13 C 1.54597 * 105.14093 * 120.77461 * 12 10 9 14 14 C 1.54936 * 102.91936 * 21.95570 * 13 12 10 15 15 N 1.47900 * 109.91586 * 44.62300 * 10 9 8 16 16 C 1.46893 * 111.00241 * 94.60764 * 15 10 9 17 17 C 1.52998 * 109.47521 * 170.00010 * 16 15 10 18 18 H 1.09003 * 109.46893 * 59.99697 * 17 16 15 19 19 O 1.42902 * 109.47030 * 299.99885 * 17 16 15 20 20 C 1.50701 * 109.47540 * 180.02562 * 17 16 15 21 21 H 1.08006 * 119.99441 * 0.02562 * 20 17 16 22 22 C 1.37871 * 120.00466 * 180.02562 * 20 17 16 23 23 N 1.31522 * 119.99573 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 120.00316 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.46895 * 89.99899 * 24 22 20 26 26 H 1.48497 * 109.46912 * 209.99806 * 24 22 20 27 27 H 1.48500 * 109.46865 * 329.99819 * 24 22 20 28 28 N 1.28624 * 110.58451 * 0.26399 * 9 8 7 29 29 H 1.08995 * 109.47196 * 59.99903 * 1 2 3 30 30 H 1.09000 * 109.46744 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46863 * 299.99885 * 1 2 3 32 32 H 1.09001 * 109.46863 * 240.00114 * 2 1 3 33 33 H 1.08995 * 109.47196 * 120.00097 * 2 1 3 34 34 H 1.08003 * 125.58745 * 0.05787 * 7 6 4 35 35 H 1.09000 * 110.30928 * 239.69163 * 12 10 9 36 36 H 1.08995 * 110.30765 * 1.85892 * 12 10 9 37 37 H 1.08989 * 110.72529 * 140.31525 * 13 12 10 38 38 H 1.09005 * 110.72240 * 263.42262 * 13 12 10 39 39 H 1.09005 * 110.66538 * 81.02346 * 14 13 12 40 40 H 1.09000 * 110.66444 * 203.98638 * 14 13 12 41 41 H 1.09005 * 109.47157 * 290.00390 * 16 15 10 42 42 H 1.09003 * 109.47284 * 49.99946 * 16 15 10 43 43 H 0.96705 * 114.00105 * 300.00074 * 19 17 16 44 44 H 0.97000 * 119.99393 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5457 -0.0005 5 8 4.0909 0.5816 -0.0005 6 6 3.9127 2.9051 -0.0011 7 6 5.2420 3.1560 -0.0012 8 16 5.4839 4.8482 -0.0012 9 6 3.7986 5.1233 -0.0004 10 6 3.1513 6.4842 -0.0006 11 1 2.0948 6.3927 -0.2527 12 6 3.3053 7.1386 1.3849 13 6 4.0773 8.4530 1.1271 14 6 3.8055 8.7257 -0.3736 15 7 3.8282 7.3639 -0.9781 16 6 3.1329 7.3463 -2.2720 17 6 3.7032 8.4438 -3.1725 18 1 4.7675 8.2684 -3.3295 19 8 3.5171 9.7161 -2.5491 20 6 2.9895 8.4262 -4.4997 21 1 2.2070 7.7045 -4.6824 22 6 3.3354 9.3312 -5.4806 23 7 4.2880 10.2102 -5.2579 24 14 2.4511 9.3088 -7.1259 25 1 1.2683 10.2046 -7.0644 26 1 3.3737 9.7794 -8.1901 27 1 2.0084 7.9245 -7.4311 28 7 3.1583 4.0078 0.0054 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 6.0225 2.4094 -0.0017 35 1 2.3261 7.3527 1.8131 36 1 3.8755 6.4889 2.0488 37 1 3.6815 9.2599 1.7436 38 1 5.1431 8.3166 1.3104 39 1 2.8293 9.1912 -0.5094 40 1 4.5907 9.3504 -0.7994 41 1 3.2748 6.3758 -2.7476 42 1 2.0686 7.5217 -2.1150 43 1 2.5916 9.9391 -2.3787 44 1 4.5310 10.8472 -5.9479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809577827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:01 Heat of formation + Delta-G solvation = -83.721151 kcal Electronic energy + Delta-G solvation = -27356.319603 eV Core-core repulsion = 23400.813605 eV Total energy + Delta-G solvation = -3955.505998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.82241 -39.63201 -38.58190 -36.71267 -35.65585 -32.23253 -32.00018 -31.69078 -31.34606 -28.42583 -27.88179 -26.27316 -24.59365 -23.51057 -22.47820 -21.33695 -20.52929 -20.39280 -19.81447 -18.78034 -17.18965 -16.89094 -16.75836 -16.43336 -15.91945 -15.23200 -14.87250 -14.66106 -14.40130 -14.26459 -14.19901 -13.79920 -13.67800 -13.15826 -13.04145 -12.88205 -12.65238 -12.23115 -12.14245 -11.96491 -11.83946 -11.78734 -11.45823 -11.35105 -10.99708 -10.88311 -10.83798 -10.71891 -10.70682 -10.52927 -10.49240 -10.00596 -9.79503 -9.63848 -9.06283 -8.93598 -8.62237 -8.09726 -8.07217 -6.05001 -4.22926 0.40218 1.22398 1.64072 1.68926 2.60542 3.05247 3.25384 3.32924 3.35999 3.74327 4.33096 4.49112 4.67957 4.69398 4.73802 4.78450 4.94115 5.01530 5.05655 5.06780 5.19651 5.22284 5.41703 5.54060 5.58104 5.69004 5.72273 5.79766 5.87275 5.92712 6.00716 6.09092 6.19767 6.23058 6.26450 6.44075 6.65314 6.87916 7.24745 7.28739 7.39392 7.70969 7.72494 7.85099 8.14188 8.79351 9.28668 9.53157 10.99065 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.003131 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.916895 B = 8939.309237 C =10325.636541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.335 6.335 4 C 0.552 3.448 5 O -0.508 6.508 6 C 0.018 3.982 7 C -0.246 4.246 8 S 0.288 5.712 9 C 0.052 3.948 10 C 0.131 3.869 11 H 0.082 0.918 12 C -0.119 4.119 13 C -0.134 4.134 14 C 0.058 3.942 15 N -0.513 5.513 16 C 0.024 3.976 17 C 0.234 3.766 18 H 0.064 0.936 19 O -0.560 6.560 20 C -0.573 4.573 21 H 0.054 0.946 22 C 0.081 3.919 23 N -0.857 5.857 24 Si 0.889 3.111 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 N -0.435 5.435 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.188 0.812 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.108 0.892 41 H 0.068 0.932 42 H 0.029 0.971 43 H 0.341 0.659 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 -12.348 15.257 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.251 6.251 4 C 0.394 3.606 5 O -0.396 6.396 6 C -0.117 4.117 7 C -0.389 4.389 8 S 0.548 5.452 9 C -0.229 4.229 10 C 0.019 3.981 11 H 0.100 0.900 12 C -0.159 4.159 13 C -0.173 4.173 14 C -0.069 4.069 15 N -0.238 5.238 16 C -0.104 4.104 17 C 0.177 3.823 18 H 0.082 0.918 19 O -0.363 6.363 20 C -0.611 4.611 21 H 0.073 0.927 22 C -0.125 4.125 23 N -0.493 5.493 24 Si 0.716 3.284 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.199 1.199 28 N -0.150 5.150 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.206 0.794 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.185 0.815 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.047 -12.029 15.023 19.245 hybrid contribution -2.408 -1.169 -1.052 2.876 sum -2.361 -13.199 13.971 19.364 Atomic orbital electron populations 1.21799 0.92398 1.02850 1.03874 1.23088 0.95634 0.80078 1.02560 1.86708 1.22974 1.31925 1.83445 1.19875 0.80865 0.87587 0.72282 1.90860 1.60740 1.41262 1.46785 1.19122 0.89148 0.91362 1.12073 1.26840 1.00386 1.04380 1.07290 1.83182 1.07940 0.93478 1.60599 1.27190 0.95091 0.97878 1.02737 1.20919 0.96801 0.86000 0.94384 0.90020 1.22462 1.01414 0.97364 0.94648 1.22717 1.00477 0.96029 0.98037 1.23413 1.02668 0.89921 0.90853 1.64769 1.49591 1.07153 1.02283 1.23226 0.95390 1.02690 0.89045 1.19358 0.97138 0.78129 0.87709 0.91791 1.86649 1.28165 1.39746 1.81770 1.21584 1.21583 1.18550 0.99405 0.92727 1.25000 0.94413 0.94926 0.98171 1.70073 1.28114 1.17730 1.33378 0.86678 0.79626 0.78388 0.83726 1.20557 1.21084 1.19852 1.66982 1.36938 0.96588 1.14516 0.91231 0.90220 0.91375 0.91115 0.91203 0.79449 0.90644 0.91358 0.91048 0.91007 0.93263 0.87393 0.91393 0.95259 0.81468 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.62 6.20 37.16 0.23 0.85 16 3 O -0.33 -4.70 10.16 -40.76 -0.41 -5.12 16 4 C 0.55 8.30 7.94 34.33 0.27 8.58 16 5 O -0.51 -8.02 16.51 -19.31 -0.32 -8.34 16 6 C 0.02 0.27 6.71 -84.55 -0.57 -0.30 16 7 C -0.25 -3.14 10.62 29.68 0.32 -2.82 16 8 S 0.29 3.58 22.70 -107.50 -2.44 1.14 16 9 C 0.05 0.76 6.06 -13.62 -0.08 0.67 16 10 C 0.13 1.89 2.96 -67.79 -0.20 1.69 16 11 H 0.08 1.26 7.57 -51.93 -0.39 0.86 16 12 C -0.12 -1.38 6.56 -25.37 -0.17 -1.55 16 13 C -0.13 -1.57 7.06 -24.87 -0.18 -1.74 16 14 C 0.06 0.88 4.66 -1.63 -0.01 0.88 16 15 N -0.51 -8.44 4.84 -223.53 -1.08 -9.52 16 16 C 0.02 0.48 4.83 -3.83 -0.02 0.46 16 17 C 0.23 5.57 2.92 -27.88 -0.08 5.49 16 18 H 0.06 1.72 8.14 -51.93 -0.42 1.30 16 19 O -0.56 -12.85 9.01 -35.23 -0.32 -13.17 16 20 C -0.57 -15.23 8.76 -34.44 -0.30 -15.53 16 21 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 22 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 23 N -0.86 -24.55 12.84 55.43 0.71 -23.84 16 24 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 N -0.44 -6.94 10.60 -8.53 -0.09 -7.03 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.19 1.99 8.03 -52.48 -0.42 1.57 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.73 7.68 -51.93 -0.40 0.33 16 37 H 0.07 0.72 8.14 -51.94 -0.42 0.30 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.76 6.84 -51.93 -0.36 0.40 16 40 H 0.11 1.90 6.85 -51.93 -0.36 1.55 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.03 0.57 7.81 -51.93 -0.41 0.16 16 43 H 0.34 7.08 8.34 45.56 0.38 7.46 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -30.97 379.06 -9.47 -40.44 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.72 Total: 5.89 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -0.50 Total: -2.01 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.46 Total: -40.40 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -1.05 Total: -26.62 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.44 Total: 1.14 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.97 -9.47 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.280 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds