Wall clock time and date at job start Sat Apr 11 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47061 * 2 1 4 4 C 1.34797 * 117.00392 * 180.02562 * 3 2 1 5 5 O 1.21560 * 119.99507 * 359.97438 * 4 3 2 6 6 C 1.47109 * 120.00496 * 179.97438 * 4 3 2 7 7 C 1.35283 * 123.15899 * 179.97438 * 6 4 3 8 8 S 1.70941 * 108.82180 * 180.02562 * 7 6 4 9 9 C 1.70759 * 91.13825 * 0.02562 * 8 7 6 10 10 C 1.50702 * 124.71014 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.90748 * 165.72545 * 10 9 8 12 12 C 1.53995 * 109.91675 * 286.82873 * 10 9 8 13 13 C 1.54597 * 105.14093 * 120.77461 * 12 10 9 14 14 C 1.54936 * 102.91936 * 21.95570 * 13 12 10 15 15 N 1.47900 * 109.91586 * 44.62300 * 10 9 8 16 16 C 1.46893 * 111.00241 * 94.60764 * 15 10 9 17 17 C 1.52998 * 109.47521 * 170.00010 * 16 15 10 18 18 H 1.09003 * 109.46893 * 59.99697 * 17 16 15 19 19 O 1.42902 * 109.47030 * 299.99885 * 17 16 15 20 20 C 1.50701 * 109.47540 * 180.02562 * 17 16 15 21 21 H 1.08006 * 119.99441 * 0.02562 * 20 17 16 22 22 C 1.37871 * 120.00466 * 180.02562 * 20 17 16 23 23 N 1.31522 * 119.99573 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 120.00316 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.46895 * 89.99899 * 24 22 20 26 26 H 1.48497 * 109.46912 * 209.99806 * 24 22 20 27 27 H 1.48500 * 109.46865 * 329.99819 * 24 22 20 28 28 N 1.28624 * 110.58451 * 0.26399 * 9 8 7 29 29 H 1.08995 * 109.47196 * 59.99903 * 1 2 3 30 30 H 1.09000 * 109.46744 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46863 * 299.99885 * 1 2 3 32 32 H 1.09001 * 109.46863 * 240.00114 * 2 1 3 33 33 H 1.08995 * 109.47196 * 120.00097 * 2 1 3 34 34 H 1.08003 * 125.58745 * 0.05787 * 7 6 4 35 35 H 1.09000 * 110.30928 * 239.69163 * 12 10 9 36 36 H 1.08995 * 110.30765 * 1.85892 * 12 10 9 37 37 H 1.08989 * 110.72529 * 140.31525 * 13 12 10 38 38 H 1.09005 * 110.72240 * 263.42262 * 13 12 10 39 39 H 1.09005 * 110.66538 * 81.02346 * 14 13 12 40 40 H 1.09000 * 110.66444 * 203.98638 * 14 13 12 41 41 H 1.09005 * 109.47157 * 290.00390 * 16 15 10 42 42 H 1.09003 * 109.47284 * 49.99946 * 16 15 10 43 43 H 0.96705 * 114.00105 * 300.00074 * 19 17 16 44 44 H 0.97000 * 119.99393 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5457 -0.0005 5 8 4.0909 0.5816 -0.0005 6 6 3.9127 2.9051 -0.0011 7 6 5.2420 3.1560 -0.0012 8 16 5.4839 4.8482 -0.0012 9 6 3.7986 5.1233 -0.0004 10 6 3.1513 6.4842 -0.0006 11 1 2.0948 6.3927 -0.2527 12 6 3.3053 7.1386 1.3849 13 6 4.0773 8.4530 1.1271 14 6 3.8055 8.7257 -0.3736 15 7 3.8282 7.3639 -0.9781 16 6 3.1329 7.3463 -2.2720 17 6 3.7032 8.4438 -3.1725 18 1 4.7675 8.2684 -3.3295 19 8 3.5171 9.7161 -2.5491 20 6 2.9895 8.4262 -4.4997 21 1 2.2070 7.7045 -4.6824 22 6 3.3354 9.3312 -5.4806 23 7 4.2880 10.2102 -5.2579 24 14 2.4511 9.3088 -7.1259 25 1 1.2683 10.2046 -7.0644 26 1 3.3737 9.7794 -8.1901 27 1 2.0084 7.9245 -7.4311 28 7 3.1583 4.0078 0.0054 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 6.0225 2.4094 -0.0017 35 1 2.3261 7.3527 1.8131 36 1 3.8755 6.4889 2.0488 37 1 3.6815 9.2599 1.7436 38 1 5.1431 8.3166 1.3104 39 1 2.8293 9.1912 -0.5094 40 1 4.5907 9.3504 -0.7994 41 1 3.2748 6.3758 -2.7476 42 1 2.0686 7.5217 -2.1150 43 1 2.5916 9.9391 -2.3787 44 1 4.5310 10.8472 -5.9479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809577827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:01 Heat of formation + Delta-G solvation = -105.277235 kcal Electronic energy + Delta-G solvation = -27357.254345 eV Core-core repulsion = 23400.813605 eV Total energy + Delta-G solvation = -3956.440740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90792 -40.78290 -39.82475 -37.79177 -37.36970 -34.27483 -33.09354 -32.86832 -32.35325 -29.63535 -29.53492 -27.30803 -26.34596 -24.53477 -23.47694 -22.80282 -21.79142 -21.60346 -20.96147 -19.92523 -18.99061 -18.08948 -17.76574 -17.48548 -17.07308 -16.68246 -16.62996 -16.06996 -15.87890 -15.70028 -15.46703 -14.83495 -14.72149 -14.63373 -14.13441 -13.94554 -13.69063 -13.60391 -13.42656 -13.15483 -13.01490 -12.91606 -12.82309 -12.72364 -12.56961 -12.44275 -12.27974 -12.07074 -11.93940 -11.62936 -11.60398 -11.50745 -11.00688 -10.89009 -10.71423 -10.69949 -10.05696 -9.87634 -9.44125 -8.13465 -6.38155 -0.65505 0.19502 0.53168 0.60568 1.39379 1.41068 1.50863 1.63401 1.93633 2.37739 2.63333 3.12712 3.28457 3.58119 3.72469 3.92870 3.95709 4.00074 4.02314 4.04297 4.20104 4.23544 4.28259 4.44577 4.46522 4.55686 4.61623 4.75312 4.81138 4.87192 4.93265 4.99706 5.02979 5.03899 5.17728 5.29449 5.36656 5.43083 5.64061 5.71514 5.96406 6.00270 6.16967 6.26158 6.63545 6.72933 7.33876 7.54299 8.90291 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.003131 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.916895 B = 8939.309237 C =10325.636541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.349 6.349 4 C 0.551 3.449 5 O -0.523 6.523 6 C -0.009 4.009 7 C -0.235 4.235 8 S 0.334 5.666 9 C 0.028 3.972 10 C 0.132 3.868 11 H 0.070 0.930 12 C -0.112 4.112 13 C -0.121 4.121 14 C 0.057 3.943 15 N -0.517 5.517 16 C 0.045 3.955 17 C 0.242 3.758 18 H 0.026 0.974 19 O -0.564 6.564 20 C -0.588 4.588 21 H 0.052 0.948 22 C 0.032 3.968 23 N -0.893 5.893 24 Si 0.953 3.047 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.271 1.271 28 N -0.456 5.456 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.209 0.791 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.351 0.649 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 -12.896 16.347 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.265 6.265 4 C 0.394 3.606 5 O -0.413 6.413 6 C -0.144 4.144 7 C -0.378 4.378 8 S 0.593 5.407 9 C -0.252 4.252 10 C 0.020 3.980 11 H 0.088 0.912 12 C -0.151 4.151 13 C -0.159 4.159 14 C -0.069 4.069 15 N -0.242 5.242 16 C -0.084 4.084 17 C 0.184 3.816 18 H 0.044 0.956 19 O -0.367 6.367 20 C -0.627 4.627 21 H 0.070 0.930 22 C -0.171 4.171 23 N -0.530 5.530 24 Si 0.779 3.221 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.195 1.195 28 N -0.171 5.171 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.226 0.774 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.196 0.804 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.466 -12.580 16.127 20.459 hybrid contribution -2.221 -1.028 -1.367 2.803 sum -2.686 -13.608 14.760 20.255 Atomic orbital electron populations 1.21830 0.90459 1.04546 1.03488 1.23431 0.97166 0.78557 1.03072 1.86702 1.22488 1.34171 1.83102 1.19956 0.81170 0.87564 0.71940 1.90835 1.61049 1.41631 1.47813 1.19278 0.89982 0.91280 1.13842 1.27157 1.00198 1.05274 1.05167 1.83006 1.05680 0.92751 1.59248 1.27229 0.96602 0.97645 1.03692 1.20929 0.95878 0.85831 0.95318 0.91201 1.22473 1.02631 0.97023 0.92957 1.22655 1.01223 0.96840 0.95224 1.23303 1.01552 0.88764 0.93316 1.64658 1.49445 1.08483 1.01649 1.22761 0.95335 1.00078 0.90196 1.19038 0.94840 0.79694 0.88056 0.95572 1.86614 1.29032 1.39559 1.81542 1.21972 1.21522 1.18280 1.00894 0.92972 1.25770 0.95082 0.94600 1.01619 1.70191 1.29608 1.18592 1.34575 0.85656 0.78582 0.78452 0.79459 1.19725 1.20819 1.19531 1.66938 1.38049 0.97114 1.15016 0.91928 0.87442 0.91388 0.90952 0.90363 0.77384 0.88990 0.89967 0.88694 0.90251 0.93524 0.90157 0.92862 0.95086 0.80363 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.29 71.98 0.74 -1.34 16 2 C 0.05 1.01 6.20 71.98 0.45 1.45 16 3 O -0.35 -9.77 10.16 -57.09 -0.58 -10.35 16 4 C 0.55 16.47 7.94 70.15 0.56 17.03 16 5 O -0.52 -16.31 16.51 19.64 0.32 -15.99 16 6 C -0.01 -0.28 6.71 40.52 0.27 -0.01 16 7 C -0.24 -5.67 10.62 67.14 0.71 -4.96 16 8 S 0.33 7.78 22.70 -56.49 -1.28 6.50 16 9 C 0.03 0.80 6.06 88.58 0.54 1.34 16 10 C 0.13 3.69 2.96 44.31 0.13 3.82 16 11 H 0.07 2.12 7.57 -2.39 -0.02 2.10 16 12 C -0.11 -2.30 6.56 31.47 0.21 -2.10 16 13 C -0.12 -2.53 7.06 31.80 0.22 -2.31 16 14 C 0.06 1.71 4.66 86.55 0.40 2.11 16 15 N -0.52 -16.94 4.84 -861.11 -4.16 -21.10 16 16 C 0.04 1.80 4.83 86.30 0.42 2.21 16 17 C 0.24 11.80 2.92 29.85 0.09 11.89 16 18 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 19 O -0.56 -26.36 9.01 -148.98 -1.34 -27.70 16 20 C -0.59 -31.77 8.76 25.60 0.22 -31.54 16 21 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 22 C 0.03 1.78 5.40 84.65 0.46 2.23 16 23 N -0.89 -51.90 12.84 21.45 0.28 -51.62 16 24 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 28 N -0.46 -14.35 10.60 -180.91 -1.92 -16.27 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 34 H 0.21 4.01 8.03 -2.91 -0.02 3.98 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.51 7.68 -2.39 -0.02 1.49 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.05 1.40 6.84 -2.38 -0.02 1.39 16 40 H 0.08 2.86 6.85 -2.39 -0.02 2.85 16 41 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.03 1.22 7.81 -2.39 -0.02 1.20 16 43 H 0.35 14.73 8.34 -74.05 -0.62 14.11 16 44 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -67.56 379.06 -0.84 -68.40 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.40 Total: 23.29 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.42 Total: -0.15 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -5.81 Total: -89.00 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -1.60 Total: -54.04 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 7.78 SS G_CDS: -1.28 Total: 6.50 kcal Total: -67.56 -0.84 -68.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.882 kcal (2) G-P(sol) polarization free energy of solvation -67.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds