Wall clock time and date at job start Sat Apr 11 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36009 * 117.00200 * 2 1 4 4 C 1.38204 * 119.96588 * 0.02562 * 3 2 1 5 5 C 1.39760 * 119.93650 * 180.02562 * 4 3 2 6 6 C 1.47483 * 120.06100 * 179.97438 * 5 4 3 7 7 O 1.21499 * 120.00082 * 0.02562 * 6 5 4 8 8 O 1.34751 * 119.99813 * 180.02562 * 6 5 4 9 9 C 1.45206 * 116.99792 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46777 * 179.97438 * 9 8 6 11 11 O 1.42904 * 109.47221 * 65.00539 * 10 9 8 12 12 C 1.42898 * 113.99912 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99914 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99894 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00076 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46761 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47094 * 119.99989 * 17 15 13 20 20 H 1.48499 * 109.47235 * 240.00105 * 17 15 13 21 21 C 1.39763 * 119.88009 * 0.27240 * 5 4 3 22 22 C 1.38211 * 119.93484 * 359.46718 * 21 5 4 23 23 O 1.36001 * 119.97181 * 180.27479 * 22 21 5 24 24 C 1.42903 * 116.99837 * 0.23530 * 23 22 21 25 25 C 1.39246 * 119.96828 * 180.02562 * 3 2 1 26 26 O 1.35874 * 119.94126 * 359.97438 * 25 3 2 27 27 C 1.42902 * 116.99963 * 90.00007 * 26 25 3 28 28 H 1.09001 * 109.47355 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47109 * 300.00243 * 1 2 3 30 30 H 1.08997 * 109.47225 * 59.99603 * 1 2 3 31 31 H 1.07999 * 120.03604 * 0.03891 * 4 3 2 32 32 H 1.09000 * 109.47070 * 300.00009 * 9 8 6 33 33 H 1.09001 * 109.46626 * 60.00027 * 9 8 6 34 34 H 1.09000 * 109.46738 * 185.00050 * 10 9 8 35 35 H 1.08994 * 109.47465 * 305.00137 * 10 9 8 36 36 H 1.09001 * 109.47167 * 299.99421 * 12 11 10 37 37 H 1.08999 * 109.47239 * 59.99584 * 12 11 10 38 38 H 0.96999 * 120.00107 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.03246 * 179.70423 * 21 5 4 40 40 H 1.08995 * 109.46997 * 180.02562 * 24 23 22 41 41 H 1.08996 * 109.47392 * 300.00064 * 24 23 22 42 42 H 1.09000 * 109.46965 * 59.99873 * 24 23 22 43 43 H 1.09007 * 109.46980 * 59.99833 * 27 26 25 44 44 H 1.08999 * 109.47585 * 179.97438 * 27 26 25 45 45 H 1.08996 * 109.47463 * 300.00428 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2931 2.3705 0.0005 5 6 1.9283 3.6154 0.0000 6 6 1.1270 4.8536 0.0000 7 8 -0.0864 4.7920 0.0009 8 8 1.7408 6.0532 -0.0011 9 6 0.8891 7.2293 -0.0004 10 6 1.7585 8.4884 -0.0011 11 8 2.4966 8.5569 -1.2228 12 6 3.3447 9.7023 -1.3260 13 6 4.0713 9.6721 -2.6460 14 1 3.9026 8.8593 -3.3368 15 6 4.9514 10.6822 -2.9717 16 7 5.1572 11.6718 -2.1303 17 14 5.8525 10.6445 -4.6076 18 1 5.4488 9.4340 -5.3672 19 1 5.5074 11.8579 -5.3910 20 1 7.3172 10.6117 -4.3652 21 6 3.3242 3.6849 -0.0069 22 6 4.0726 2.5229 -0.0019 23 8 5.4309 2.5897 -0.0029 24 6 6.0164 3.8933 -0.0040 25 6 3.4371 1.2839 -0.0005 26 8 4.1752 0.1432 -0.0005 27 6 4.5272 -0.4018 -1.2738 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.2146 2.3140 0.0016 32 1 0.2589 7.2220 -0.8897 33 1 0.2609 7.2224 0.8903 34 1 1.1225 9.3690 0.0889 35 1 2.4506 8.4525 0.8401 36 1 2.7414 10.6080 -1.2636 37 1 4.0698 9.6921 -0.5122 38 1 5.7761 12.3826 -2.3596 39 1 3.8175 4.6455 -0.0121 40 1 7.1027 3.8037 -0.0052 41 1 5.6959 4.4348 -0.8939 42 1 5.6971 4.4356 0.8860 43 1 5.1151 0.3275 -1.8312 44 1 5.1147 -1.3087 -1.1311 45 1 3.6208 -0.6395 -1.8305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815171435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:11 Heat of formation + Delta-G solvation = -210.464540 kcal Electronic energy + Delta-G solvation = -29564.802434 eV Core-core repulsion = 25128.754807 eV Total energy + Delta-G solvation = -4436.047626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.23281 -40.16580 -39.28571 -38.02621 -37.24646 -36.41788 -35.98989 -32.82817 -31.19142 -30.13595 -29.88389 -28.07561 -27.34979 -27.19560 -26.80158 -24.17603 -22.57568 -22.32989 -22.03227 -21.11406 -19.15827 -18.02874 -17.57333 -17.04842 -16.66455 -16.62644 -16.56881 -16.41105 -16.15119 -15.75864 -15.37308 -15.23720 -14.99485 -14.78042 -14.70685 -14.40294 -13.95746 -13.46141 -13.33953 -13.15794 -12.76890 -12.60265 -12.39501 -12.10646 -11.99716 -11.84849 -11.76175 -11.52617 -11.48644 -11.00811 -10.95122 -10.92474 -10.80933 -10.55515 -10.45415 -10.21036 -10.10097 -9.17121 -8.94136 -8.62502 -8.52056 -8.27474 -6.17290 -4.19130 0.27737 1.02928 2.29509 2.46721 2.64253 3.23992 3.24747 3.31683 3.35340 3.37865 3.62634 4.27271 4.41280 4.58126 4.66902 4.68235 4.82230 4.85944 4.87266 4.98879 5.05233 5.14935 5.15269 5.17346 5.19341 5.19476 5.21300 5.38909 5.46462 5.48177 5.51367 5.78287 5.79971 5.84660 5.93039 5.97741 6.03659 6.43847 6.69874 6.93745 6.99404 7.33654 7.37480 7.70148 7.73231 8.06769 8.46022 8.93800 9.45970 10.94234 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.011714 B = 0.002729 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.752688 B =10258.956416 C =11852.810813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.301 6.301 3 C 0.135 3.865 4 C -0.172 4.172 5 C -0.048 4.048 6 C 0.509 3.491 7 O -0.508 6.508 8 O -0.334 6.334 9 C 0.075 3.925 10 C 0.061 3.939 11 O -0.391 6.391 12 C 0.194 3.806 13 C -0.515 4.515 14 H 0.067 0.933 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.171 4.171 22 C 0.139 3.861 23 O -0.301 6.301 24 C 0.019 3.981 25 C 0.060 3.940 26 O -0.313 6.313 27 C 0.035 3.965 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.150 0.850 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.264 0.736 39 H 0.158 0.842 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.093 0.907 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 -22.139 6.343 23.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.213 6.213 3 C 0.089 3.911 4 C -0.191 4.191 5 C -0.049 4.049 6 C 0.354 3.646 7 O -0.398 6.398 8 O -0.250 6.250 9 C 0.001 3.999 10 C -0.016 4.016 11 O -0.311 6.311 12 C 0.120 3.880 13 C -0.553 4.553 14 H 0.085 0.915 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.190 4.190 22 C 0.092 3.908 23 O -0.214 6.214 24 C -0.076 4.076 25 C 0.014 3.986 26 O -0.229 6.229 27 C -0.059 4.059 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.168 0.832 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.175 0.825 40 H 0.124 0.876 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.433 -22.526 6.360 24.029 hybrid contribution 0.059 1.020 -0.796 1.295 sum -5.374 -21.506 5.564 22.855 Atomic orbital electron populations 1.23190 0.77796 1.04329 1.01990 1.86161 1.21651 1.25180 1.88348 1.18677 0.90451 0.84932 0.97070 1.21095 1.01143 0.89793 1.07095 1.18652 0.92451 0.90493 1.03321 1.20926 0.86312 0.84393 0.72977 1.90815 1.14834 1.88155 1.46005 1.86641 1.41115 1.14227 1.82972 1.23288 0.92481 0.81302 1.02793 1.22331 0.95083 0.93709 0.90519 1.87921 1.59704 1.48682 1.34777 1.20246 0.87957 0.82244 0.97550 1.21077 1.23749 1.08467 1.02002 0.91472 1.24949 0.96681 0.95015 0.97840 1.69965 1.36411 1.11427 1.35916 0.86290 0.79208 0.78183 0.82883 1.19456 1.20804 1.20786 1.21540 0.93266 0.98776 1.05427 1.18827 0.83743 0.92104 0.96117 1.86148 1.15561 1.31713 1.87956 1.23281 0.99287 0.82386 1.02642 1.17217 0.86401 0.84952 1.09989 1.86083 1.70234 1.37356 1.29195 1.23017 0.99722 0.98632 0.84523 0.87788 0.92144 0.92188 0.83226 0.90245 0.90183 0.91762 0.93123 0.97587 0.97498 0.92644 0.82478 0.87595 0.91487 0.91874 0.93352 0.88814 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.30 -3.24 10.27 -34.51 -0.35 -3.59 16 3 C 0.14 1.63 6.69 -39.22 -0.26 1.37 16 4 C -0.17 -2.08 8.57 -39.03 -0.33 -2.41 16 5 C -0.05 -0.65 5.87 -104.99 -0.62 -1.27 16 6 C 0.51 7.83 7.89 34.50 0.27 8.10 16 7 O -0.51 -8.38 16.13 -19.26 -0.31 -8.69 16 8 O -0.33 -5.46 9.43 -43.41 -0.41 -5.87 16 9 C 0.07 1.15 5.85 37.16 0.22 1.36 16 10 C 0.06 1.07 6.33 37.16 0.24 1.31 16 11 O -0.39 -9.15 10.30 -38.79 -0.40 -9.55 16 12 C 0.19 5.16 5.69 36.01 0.20 5.37 16 13 C -0.51 -14.82 9.43 -34.44 -0.32 -15.15 16 14 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 17 Si 0.91 21.40 29.54 -169.99 -5.02 16.37 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.17 -2.24 8.60 -39.02 -0.34 -2.57 16 22 C 0.14 1.80 6.69 -39.21 -0.26 1.54 16 23 O -0.30 -3.74 10.27 -34.49 -0.35 -4.09 16 24 C 0.02 0.18 9.81 101.05 0.99 1.18 16 25 C 0.06 0.79 5.75 -38.83 -0.22 0.56 16 26 O -0.31 -4.04 9.96 -44.74 -0.45 -4.48 16 27 C 0.04 0.34 11.13 101.05 1.12 1.46 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.15 1.61 5.86 -52.49 -0.31 1.30 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.16 2.02 5.82 -52.49 -0.31 1.71 16 40 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.68 7.65 -51.93 -0.40 0.29 16 42 H 0.06 0.58 7.67 -51.93 -0.40 0.19 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -34.19 392.06 -5.47 -39.66 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.40 Total: -3.61 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 1.58 Total: 3.49 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -2.27 Total: -36.28 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.19 -5.47 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815171435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.802 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds