Wall clock time and date at job start Sat Apr 11 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36009 * 117.00200 * 2 1 4 4 C 1.38204 * 119.96588 * 0.02562 * 3 2 1 5 5 C 1.39760 * 119.93650 * 180.02562 * 4 3 2 6 6 C 1.47483 * 120.06100 * 179.97438 * 5 4 3 7 7 O 1.21499 * 120.00082 * 0.02562 * 6 5 4 8 8 O 1.34751 * 119.99813 * 180.02562 * 6 5 4 9 9 C 1.45206 * 116.99792 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46777 * 179.97438 * 9 8 6 11 11 O 1.42904 * 109.47221 * 65.00539 * 10 9 8 12 12 C 1.42898 * 113.99912 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99914 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99894 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00076 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46761 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47094 * 119.99989 * 17 15 13 20 20 H 1.48499 * 109.47235 * 240.00105 * 17 15 13 21 21 C 1.39763 * 119.88009 * 0.27240 * 5 4 3 22 22 C 1.38211 * 119.93484 * 359.46718 * 21 5 4 23 23 O 1.36001 * 119.97181 * 180.27479 * 22 21 5 24 24 C 1.42903 * 116.99837 * 0.23530 * 23 22 21 25 25 C 1.39246 * 119.96828 * 180.02562 * 3 2 1 26 26 O 1.35874 * 119.94126 * 359.97438 * 25 3 2 27 27 C 1.42902 * 116.99963 * 90.00007 * 26 25 3 28 28 H 1.09001 * 109.47355 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47109 * 300.00243 * 1 2 3 30 30 H 1.08997 * 109.47225 * 59.99603 * 1 2 3 31 31 H 1.07999 * 120.03604 * 0.03891 * 4 3 2 32 32 H 1.09000 * 109.47070 * 300.00009 * 9 8 6 33 33 H 1.09001 * 109.46626 * 60.00027 * 9 8 6 34 34 H 1.09000 * 109.46738 * 185.00050 * 10 9 8 35 35 H 1.08994 * 109.47465 * 305.00137 * 10 9 8 36 36 H 1.09001 * 109.47167 * 299.99421 * 12 11 10 37 37 H 1.08999 * 109.47239 * 59.99584 * 12 11 10 38 38 H 0.96999 * 120.00107 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.03246 * 179.70423 * 21 5 4 40 40 H 1.08995 * 109.46997 * 180.02562 * 24 23 22 41 41 H 1.08996 * 109.47392 * 300.00064 * 24 23 22 42 42 H 1.09000 * 109.46965 * 59.99873 * 24 23 22 43 43 H 1.09007 * 109.46980 * 59.99833 * 27 26 25 44 44 H 1.08999 * 109.47585 * 179.97438 * 27 26 25 45 45 H 1.08996 * 109.47463 * 300.00428 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2931 2.3705 0.0005 5 6 1.9283 3.6154 0.0000 6 6 1.1270 4.8536 0.0000 7 8 -0.0864 4.7920 0.0009 8 8 1.7408 6.0532 -0.0011 9 6 0.8891 7.2293 -0.0004 10 6 1.7585 8.4884 -0.0011 11 8 2.4966 8.5569 -1.2228 12 6 3.3447 9.7023 -1.3260 13 6 4.0713 9.6721 -2.6460 14 1 3.9026 8.8593 -3.3368 15 6 4.9514 10.6822 -2.9717 16 7 5.1572 11.6718 -2.1303 17 14 5.8525 10.6445 -4.6076 18 1 5.4488 9.4340 -5.3672 19 1 5.5074 11.8579 -5.3910 20 1 7.3172 10.6117 -4.3652 21 6 3.3242 3.6849 -0.0069 22 6 4.0726 2.5229 -0.0019 23 8 5.4309 2.5897 -0.0029 24 6 6.0164 3.8933 -0.0040 25 6 3.4371 1.2839 -0.0005 26 8 4.1752 0.1432 -0.0005 27 6 4.5272 -0.4018 -1.2738 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.2146 2.3140 0.0016 32 1 0.2589 7.2220 -0.8897 33 1 0.2609 7.2224 0.8903 34 1 1.1225 9.3690 0.0889 35 1 2.4506 8.4525 0.8401 36 1 2.7414 10.6080 -1.2636 37 1 4.0698 9.6921 -0.5122 38 1 5.7761 12.3826 -2.3596 39 1 3.8175 4.6455 -0.0121 40 1 7.1027 3.8037 -0.0052 41 1 5.6959 4.4348 -0.8939 42 1 5.6971 4.4356 0.8860 43 1 5.1151 0.3275 -1.8312 44 1 5.1147 -1.3087 -1.1311 45 1 3.6208 -0.6395 -1.8305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815171435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:10 Heat of formation + Delta-G solvation = -231.944749 kcal Electronic energy + Delta-G solvation = -29565.733885 eV Core-core repulsion = 25128.754807 eV Total energy + Delta-G solvation = -4436.979078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.21615 -41.31935 -40.13999 -38.94463 -38.77677 -37.67050 -37.17204 -34.94903 -32.28845 -31.38971 -30.91365 -29.07172 -28.80130 -28.09960 -27.82653 -25.25575 -24.53697 -23.60944 -23.06585 -22.23901 -20.14351 -19.06736 -18.71985 -18.48600 -18.02424 -17.96479 -17.51830 -17.40882 -17.34688 -17.02367 -16.54934 -16.38457 -16.23255 -16.08492 -15.86165 -15.58107 -15.34173 -14.66047 -14.43876 -14.20822 -14.12791 -13.76539 -13.50076 -13.33568 -13.20519 -12.91190 -12.83136 -12.73725 -12.58607 -12.51405 -12.49048 -12.35186 -12.03333 -11.85762 -11.79211 -11.71331 -11.26705 -11.09066 -10.90565 -10.27340 -9.56808 -9.45864 -8.32735 -6.44445 -0.75078 0.07696 1.19426 1.40536 1.40800 1.41121 1.55816 1.71962 2.25370 2.33960 2.54133 2.69039 3.01504 3.05198 3.32753 3.67953 3.75696 3.87385 3.91040 4.06741 4.09975 4.17841 4.32057 4.35566 4.36231 4.39842 4.46004 4.47040 4.47687 4.55699 4.67483 4.71903 4.74384 4.78079 4.86057 4.86320 4.95798 5.03607 5.17400 5.22752 5.54492 5.86218 5.95136 6.08070 6.47220 6.48049 6.52777 6.79740 7.27252 8.79533 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.011714 B = 0.002729 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.752688 B =10258.956416 C =11852.810813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.310 6.310 3 C 0.138 3.862 4 C -0.165 4.165 5 C -0.062 4.062 6 C 0.513 3.487 7 O -0.522 6.522 8 O -0.348 6.348 9 C 0.078 3.922 10 C 0.053 3.947 11 O -0.409 6.409 12 C 0.208 3.792 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.980 3.020 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.270 1.270 21 C -0.173 4.173 22 C 0.132 3.868 23 O -0.310 6.310 24 C 0.014 3.986 25 C 0.052 3.948 26 O -0.329 6.329 27 C 0.031 3.969 28 H 0.130 0.870 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.163 0.837 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.058 0.942 36 H -0.008 1.008 37 H -0.009 1.009 38 H 0.271 0.729 39 H 0.154 0.846 40 H 0.128 0.872 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.117 0.883 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.556 -23.271 5.839 24.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.223 6.223 3 C 0.091 3.909 4 C -0.184 4.184 5 C -0.063 4.063 6 C 0.358 3.642 7 O -0.413 6.413 8 O -0.264 6.264 9 C 0.004 3.996 10 C -0.023 4.023 11 O -0.329 6.329 12 C 0.133 3.867 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.803 3.197 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.195 1.195 21 C -0.192 4.192 22 C 0.086 3.914 23 O -0.223 6.223 24 C -0.080 4.080 25 C 0.006 3.994 26 O -0.246 6.246 27 C -0.062 4.062 28 H 0.148 0.852 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.181 0.819 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.080 0.920 39 H 0.172 0.828 40 H 0.147 0.853 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.135 0.865 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.536 -23.669 5.870 25.007 hybrid contribution 0.032 1.283 -0.572 1.405 sum -5.504 -22.386 5.298 23.654 Atomic orbital electron populations 1.23517 0.75727 1.06332 1.02631 1.86162 1.23754 1.24399 1.87998 1.18668 0.90259 0.85450 0.96489 1.21190 1.01753 0.89177 1.06231 1.18645 0.92529 0.90289 1.04845 1.21143 0.86275 0.84406 0.72342 1.90797 1.15321 1.88262 1.46925 1.86632 1.41784 1.14842 1.83172 1.23312 0.91892 0.80136 1.04213 1.22656 0.95338 0.95885 0.88465 1.87866 1.59841 1.47281 1.37886 1.19870 0.87718 0.82758 0.96320 1.21394 1.25139 1.08939 1.03010 0.92236 1.25900 0.97099 0.94223 1.01779 1.70058 1.36876 1.11984 1.37868 0.85188 0.78114 0.78510 0.77928 1.18988 1.19775 1.19538 1.21490 0.93200 0.98797 1.05728 1.18890 0.84052 0.92120 0.96388 1.86136 1.15302 1.32945 1.87940 1.23458 1.00481 0.81573 1.02492 1.17442 0.87015 0.85117 1.09804 1.86039 1.70329 1.37257 1.30963 1.23208 1.00278 0.99308 0.83429 0.85214 0.91478 0.91526 0.81940 0.90623 0.86909 0.89799 0.92338 0.99069 0.99096 0.92016 0.82797 0.85348 0.92155 0.91507 0.93536 0.86517 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.31 -6.24 10.27 -79.55 -0.82 -7.05 16 3 C 0.14 3.23 6.69 22.50 0.15 3.38 16 4 C -0.16 -3.84 8.57 22.63 0.19 -3.64 16 5 C -0.06 -1.66 5.87 -20.10 -0.12 -1.78 16 6 C 0.51 15.55 7.89 70.26 0.55 16.10 16 7 O -0.52 -16.77 16.13 19.84 0.32 -16.45 16 8 O -0.35 -11.30 9.43 -53.96 -0.51 -11.81 16 9 C 0.08 2.31 5.85 71.98 0.42 2.73 16 10 C 0.05 1.84 6.33 71.98 0.46 2.30 16 11 O -0.41 -19.40 10.30 -145.57 -1.50 -20.89 16 12 C 0.21 11.33 5.69 71.24 0.41 11.73 16 13 C -0.55 -31.96 9.43 25.60 0.24 -31.72 16 14 H 0.06 3.48 7.81 -2.91 -0.02 3.45 16 15 C 0.01 0.49 5.46 84.66 0.46 0.95 16 16 N -0.93 -54.50 13.29 21.45 0.28 -54.22 16 17 Si 0.98 43.51 29.54 68.60 2.03 45.54 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 C -0.17 -4.57 8.60 22.63 0.19 -4.38 16 22 C 0.13 3.44 6.69 22.51 0.15 3.59 16 23 O -0.31 -7.67 10.27 -79.47 -0.82 -8.49 16 24 C 0.01 0.27 9.81 113.37 1.11 1.39 16 25 C 0.05 1.34 5.75 22.76 0.13 1.47 16 26 O -0.33 -8.28 9.96 -67.85 -0.68 -8.95 16 27 C 0.03 0.56 11.13 113.37 1.26 1.83 16 28 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.71 7.66 -2.38 -0.02 0.69 16 30 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 31 H 0.16 3.28 5.86 -2.91 -0.02 3.26 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 39 H 0.15 4.08 5.82 -2.91 -0.02 4.06 16 40 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 1.25 7.65 -2.39 -0.02 1.23 16 42 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 43 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -72.93 392.06 6.05 -66.87 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.01 Total: 10.26 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 6.73 Total: 5.20 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.28 Total: -54.22 kcal Atomic # 8 Polarization: -69.66 SS G_CDS: -4.00 Total: -73.65 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.93 6.05 -66.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815171435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.070 kcal (2) G-P(sol) polarization free energy of solvation -72.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds