Wall clock time and date at job start Sat Apr 11 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 C 1.50702 * 109.47352 * 170.00148 * 4 2 1 6 6 C 1.38376 * 119.92527 * 269.72781 * 5 4 2 7 7 C 1.38345 * 120.28937 * 179.72356 * 6 5 4 8 8 C 1.37971 * 120.14324 * 0.54520 * 7 6 5 9 9 C 1.39553 * 119.85628 * 359.73220 * 8 7 6 10 10 C 1.47850 * 120.14584 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99852 * 179.97438 * 10 9 8 12 12 N 1.34771 * 120.00070 * 359.97246 * 10 9 8 13 13 S 1.65596 * 120.00262 * 180.02562 * 12 10 9 14 14 O 1.42102 * 104.28128 * 181.07672 * 13 12 10 15 15 O 1.42105 * 104.27812 * 308.93229 * 13 12 10 16 16 C 1.81393 * 104.44845 * 64.99999 * 13 12 10 17 17 C 1.53009 * 109.47291 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.47296 * 180.02562 * 17 16 13 19 19 H 1.07997 * 119.99772 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00067 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00322 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99892 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47317 * 90.00166 * 22 20 18 24 24 H 1.48506 * 109.46781 * 210.00175 * 22 20 18 25 25 H 1.48502 * 109.47229 * 329.99666 * 22 20 18 26 26 C 1.37935 * 119.92586 * 89.99765 * 5 4 2 27 27 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 28 28 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 29 29 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 30 30 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 31 31 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 33 33 H 1.09009 * 109.47180 * 289.99861 * 4 2 1 34 34 H 1.08996 * 109.47374 * 50.00147 * 4 2 1 35 35 H 1.07999 * 119.85938 * 359.97438 * 6 5 4 36 36 H 1.08002 * 119.92333 * 180.25635 * 7 6 5 37 37 H 1.08005 * 120.06983 * 179.75146 * 8 7 6 38 38 H 0.97001 * 119.99913 * 0.02562 * 12 10 9 39 39 H 1.08999 * 109.47350 * 300.00017 * 16 13 12 40 40 H 1.08998 * 109.47412 * 60.00631 * 16 13 12 41 41 H 1.08999 * 109.46963 * 300.00285 * 17 16 13 42 42 H 1.09003 * 109.46486 * 60.00474 * 17 16 13 43 43 H 0.96995 * 120.00121 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.07705 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9524 0.9728 6 6 3.9685 -2.0621 0.3044 7 6 5.3313 -2.2379 0.1439 8 6 6.2148 -1.3122 0.6598 9 6 5.7308 -0.1938 1.3398 10 6 6.6718 0.8025 1.8948 11 8 6.2473 1.7758 2.4862 12 7 8.0002 0.6314 1.7448 13 16 9.0542 1.7469 2.3668 14 8 10.3376 1.2588 2.0007 15 8 8.5766 2.9921 1.8761 16 6 8.8203 1.6385 4.1624 17 6 9.7511 2.6333 4.8590 18 6 9.5572 2.5428 6.3507 19 1 8.8420 1.8453 6.7609 20 6 10.2929 3.3505 7.1917 21 7 10.1233 3.2720 8.4935 22 14 11.5294 4.5575 6.4820 23 1 10.8601 5.8578 6.2244 24 1 12.6392 4.7549 7.4488 25 1 12.0720 4.0192 5.2088 26 6 4.3543 -0.0195 1.4934 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 -1.0253 -0.0709 30 1 1.6459 1.8948 0.8900 31 1 3.0850 1.3425 -0.0005 32 1 1.6459 1.8949 -0.8899 33 1 1.7976 -0.2247 2.0628 34 1 1.5091 -1.7406 1.1755 35 1 3.2813 -2.7921 -0.0972 36 1 5.7045 -3.1040 -0.3824 37 1 7.2786 -1.4527 0.5372 38 1 8.3389 -0.1452 1.2725 39 1 7.7852 1.8750 4.4089 40 1 9.0522 0.6280 4.4987 41 1 10.7860 2.3964 4.6124 42 1 9.5196 3.6440 4.5228 43 1 10.6412 3.8400 9.0852 44 1 3.9733 0.8441 2.0182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835274125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:28 Heat of formation + Delta-G solvation = -76.939285 kcal Electronic energy + Delta-G solvation = -26992.721864 eV Core-core repulsion = 23037.509949 eV Total energy + Delta-G solvation = -3955.211914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74487 -39.21795 -37.31425 -36.82253 -35.77080 -34.68862 -33.96199 -32.14465 -31.53593 -31.46562 -27.94817 -27.21808 -26.02846 -24.81524 -22.94129 -21.99666 -21.36092 -20.92399 -19.52912 -18.35163 -17.69374 -16.93077 -16.60349 -15.99403 -15.97415 -15.84498 -15.73198 -15.25721 -15.00567 -14.88016 -14.69743 -14.28945 -14.16523 -13.68638 -13.21674 -12.91055 -12.81858 -12.71890 -12.54385 -12.39673 -12.13630 -12.00507 -11.93657 -11.88242 -11.83718 -11.75719 -11.36138 -11.29018 -11.24294 -10.95436 -10.47100 -10.41163 -10.11539 -9.64794 -9.36490 -9.33318 -9.29430 -8.74991 -8.65583 -6.15749 -4.17175 0.33334 0.44241 0.92688 2.29392 2.57461 3.27753 3.31750 3.34620 3.38191 3.76813 3.84942 4.05249 4.25096 4.36424 4.41901 4.49392 4.60415 4.74680 4.79955 4.86097 4.91533 4.97269 5.09071 5.13200 5.15662 5.27231 5.30948 5.41100 5.46023 5.47749 5.52831 5.58828 5.66983 5.87448 5.95362 6.11629 6.25624 6.43264 6.54191 6.56735 6.59398 6.79701 6.92564 7.36540 7.54056 8.37025 8.85335 9.43331 10.96587 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016852 B = 0.002576 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.141105 B =10865.166490 C =11532.179880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.015 3.985 4 C 0.091 3.909 5 C -0.089 4.089 6 C -0.067 4.067 7 C -0.127 4.127 8 C -0.080 4.080 9 C -0.139 4.139 10 C 0.580 3.420 11 O -0.485 6.485 12 N -1.055 6.055 13 S 2.565 3.435 14 O -0.953 6.953 15 O -0.936 6.936 16 C -0.569 4.569 17 C -0.005 4.005 18 C -0.518 4.518 19 H 0.079 0.921 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.870 3.130 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.262 1.262 26 C -0.048 4.048 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.427 0.573 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.267 0.733 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.471 -13.569 -19.361 28.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.133 4.133 4 C -0.036 4.036 5 C -0.090 4.090 6 C -0.086 4.086 7 C -0.145 4.145 8 C -0.099 4.099 9 C -0.144 4.144 10 C 0.368 3.632 11 O -0.357 6.357 12 N -0.816 5.816 13 S 2.665 3.335 14 O -0.943 6.943 15 O -0.926 6.926 16 C -0.703 4.703 17 C -0.045 4.045 18 C -0.557 4.557 19 H 0.097 0.903 20 C -0.131 4.131 21 N -0.533 5.533 22 Si 0.696 3.304 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.186 1.186 26 C -0.068 4.068 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.264 0.736 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.031 -12.451 -19.758 28.326 hybrid contribution 0.325 0.293 0.737 0.857 sum -15.706 -12.158 -19.021 27.501 Atomic orbital electron populations 1.22400 0.86903 1.02322 1.00821 1.62022 1.07883 1.14419 1.42340 1.22533 1.01599 0.88203 1.00957 1.21086 0.90878 0.99309 0.92334 1.19681 0.95075 0.95098 0.99118 1.21260 0.95459 0.96574 0.95276 1.21111 0.93136 0.99597 1.00647 1.21354 1.00209 0.92904 0.95389 1.19772 0.93877 0.96688 1.04086 1.18213 0.81589 0.85350 0.78046 1.90981 1.77106 1.28697 1.38918 1.55297 1.18218 1.42215 1.65913 1.06703 0.73171 0.73831 0.79799 1.93600 1.37444 1.80161 1.83106 1.93607 1.79798 1.40646 1.78570 1.30181 1.11745 1.10481 1.17890 1.19438 0.93484 0.92851 0.98716 1.20809 1.24252 1.23379 0.87293 0.90324 1.24975 0.96651 0.96699 0.94753 1.69878 1.41259 1.39703 1.02433 0.86920 0.81589 0.82213 0.79699 1.19609 1.20729 1.18633 1.21247 0.91310 0.98206 0.95997 0.91144 0.95417 0.91267 0.95156 0.90719 0.91185 0.93307 0.89509 0.85278 0.84971 0.85250 0.73648 0.84456 0.85347 0.94823 0.95093 0.92353 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.57 60.07 0.57 0.71 16 2 N -0.54 -4.19 5.01 -252.72 -1.27 -5.46 16 3 C 0.02 0.12 9.25 60.06 0.56 0.68 16 4 C 0.09 0.66 5.12 -4.98 -0.03 0.63 16 5 C -0.09 -0.75 4.89 -104.68 -0.51 -1.26 16 6 C -0.07 -0.47 9.69 -39.49 -0.38 -0.85 16 7 C -0.13 -0.85 10.03 -39.64 -0.40 -1.25 16 8 C -0.08 -0.64 9.54 -39.19 -0.37 -1.01 16 9 C -0.14 -1.51 5.87 -104.97 -0.62 -2.13 16 10 C 0.58 8.05 7.51 -12.33 -0.09 7.95 16 11 O -0.48 -8.46 14.45 -11.82 -0.17 -8.63 16 12 N -1.05 -13.41 5.55 30.53 0.17 -13.24 16 13 S 2.57 44.67 5.11 -107.50 -0.55 44.12 16 14 O -0.95 -17.76 18.08 -57.54 -1.04 -18.80 16 15 O -0.94 -19.57 17.04 -64.79 -1.10 -20.67 16 16 C -0.57 -10.92 5.82 37.16 0.22 -10.70 16 17 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 18 C -0.52 -14.69 9.66 -34.44 -0.33 -15.03 16 19 H 0.08 2.34 7.99 -52.49 -0.42 1.93 16 20 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 21 N -0.89 -27.27 13.96 55.43 0.77 -26.50 16 22 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 26 C -0.05 -0.50 7.44 -39.18 -0.29 -0.79 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.70 5.89 -51.93 -0.31 0.39 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.36 8.06 -51.92 -0.42 -0.06 16 34 H 0.09 0.49 8.00 -51.93 -0.42 0.07 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.13 0.71 6.41 -52.48 -0.34 0.38 16 38 H 0.43 3.67 6.82 -34.47 -0.24 3.43 16 39 H 0.14 2.63 7.19 -51.92 -0.37 2.26 16 40 H 0.13 2.14 8.14 -51.93 -0.42 1.72 16 41 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 42 H 0.03 0.74 7.57 -51.93 -0.39 0.35 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.14 1.49 7.57 -52.49 -0.40 1.10 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -36.98 377.28 -10.27 -47.25 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.22 Total: 0.53 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -1.89 Total: -21.29 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.32 Total: -45.20 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -2.31 Total: -48.10 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: 44.67 SS G_CDS: -0.55 Total: 44.12 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.98 -10.27 -47.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835274125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.687 kcal (2) G-P(sol) polarization free energy of solvation -36.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds