Wall clock time and date at job start Sat Apr 11 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 C 1.50702 * 109.47352 * 170.00148 * 4 2 1 6 6 C 1.38376 * 119.92527 * 269.72781 * 5 4 2 7 7 C 1.38345 * 120.28937 * 179.72356 * 6 5 4 8 8 C 1.37971 * 120.14324 * 0.54520 * 7 6 5 9 9 C 1.39553 * 119.85628 * 359.73220 * 8 7 6 10 10 C 1.47850 * 120.14584 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99852 * 179.97438 * 10 9 8 12 12 N 1.34771 * 120.00070 * 359.97246 * 10 9 8 13 13 S 1.65596 * 120.00262 * 180.02562 * 12 10 9 14 14 O 1.42102 * 104.28128 * 181.07672 * 13 12 10 15 15 O 1.42105 * 104.27812 * 308.93229 * 13 12 10 16 16 C 1.81393 * 104.44845 * 64.99999 * 13 12 10 17 17 C 1.53009 * 109.47291 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.47296 * 180.02562 * 17 16 13 19 19 H 1.07997 * 119.99772 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00067 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00322 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99892 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47317 * 90.00166 * 22 20 18 24 24 H 1.48506 * 109.46781 * 210.00175 * 22 20 18 25 25 H 1.48502 * 109.47229 * 329.99666 * 22 20 18 26 26 C 1.37935 * 119.92586 * 89.99765 * 5 4 2 27 27 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 28 28 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 29 29 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 30 30 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 31 31 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 33 33 H 1.09009 * 109.47180 * 289.99861 * 4 2 1 34 34 H 1.08996 * 109.47374 * 50.00147 * 4 2 1 35 35 H 1.07999 * 119.85938 * 359.97438 * 6 5 4 36 36 H 1.08002 * 119.92333 * 180.25635 * 7 6 5 37 37 H 1.08005 * 120.06983 * 179.75146 * 8 7 6 38 38 H 0.97001 * 119.99913 * 0.02562 * 12 10 9 39 39 H 1.08999 * 109.47350 * 300.00017 * 16 13 12 40 40 H 1.08998 * 109.47412 * 60.00631 * 16 13 12 41 41 H 1.08999 * 109.46963 * 300.00285 * 17 16 13 42 42 H 1.09003 * 109.46486 * 60.00474 * 17 16 13 43 43 H 0.96995 * 120.00121 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.07705 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9524 0.9728 6 6 3.9685 -2.0621 0.3044 7 6 5.3313 -2.2379 0.1439 8 6 6.2148 -1.3122 0.6598 9 6 5.7308 -0.1938 1.3398 10 6 6.6718 0.8025 1.8948 11 8 6.2473 1.7758 2.4862 12 7 8.0002 0.6314 1.7448 13 16 9.0542 1.7469 2.3668 14 8 10.3376 1.2588 2.0007 15 8 8.5766 2.9921 1.8761 16 6 8.8203 1.6385 4.1624 17 6 9.7511 2.6333 4.8590 18 6 9.5572 2.5428 6.3507 19 1 8.8420 1.8453 6.7609 20 6 10.2929 3.3505 7.1917 21 7 10.1233 3.2720 8.4935 22 14 11.5294 4.5575 6.4820 23 1 10.8601 5.8578 6.2244 24 1 12.6392 4.7549 7.4488 25 1 12.0720 4.0192 5.2088 26 6 4.3543 -0.0195 1.4934 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 -1.0253 -0.0709 30 1 1.6459 1.8948 0.8900 31 1 3.0850 1.3425 -0.0005 32 1 1.6459 1.8949 -0.8899 33 1 1.7976 -0.2247 2.0628 34 1 1.5091 -1.7406 1.1755 35 1 3.2813 -2.7921 -0.0972 36 1 5.7045 -3.1040 -0.3824 37 1 7.2786 -1.4527 0.5372 38 1 8.3389 -0.1452 1.2725 39 1 7.7852 1.8750 4.4089 40 1 9.0522 0.6280 4.4987 41 1 10.7860 2.3964 4.6124 42 1 9.5196 3.6440 4.5228 43 1 10.6412 3.8400 9.0852 44 1 3.9733 0.8441 2.0182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835274125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:27 Heat of formation + Delta-G solvation = -105.404396 kcal Electronic energy + Delta-G solvation = -26993.956204 eV Core-core repulsion = 23037.509949 eV Total energy + Delta-G solvation = -3956.446254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69328 -40.02672 -38.37233 -37.87594 -37.30573 -36.01089 -35.79230 -33.54268 -32.79403 -32.16884 -28.54147 -27.99976 -27.76740 -25.71295 -23.57562 -23.23575 -22.71941 -21.77810 -20.84212 -19.64919 -19.17363 -18.52557 -17.44284 -17.30899 -16.77459 -16.69879 -16.50766 -16.41867 -16.35645 -16.17963 -15.62344 -15.44561 -15.34278 -14.85720 -14.79137 -13.98755 -13.85886 -13.70271 -13.54616 -13.43974 -13.32364 -13.23817 -13.14068 -13.06554 -13.00695 -12.76285 -12.56272 -12.45180 -12.36071 -12.17896 -11.97163 -11.94879 -11.73645 -11.49989 -11.23556 -10.86759 -10.00688 -9.91441 -9.33972 -8.38616 -6.45278 -1.09292 -0.34463 0.31136 1.23035 1.31913 1.32575 1.41359 1.43136 2.28111 2.44471 2.67513 2.92082 2.94987 3.16488 3.21081 3.66191 3.70666 3.86598 3.88837 3.95202 4.06714 4.21361 4.29117 4.31492 4.42394 4.48711 4.52602 4.57797 4.70267 4.77396 4.82732 4.98490 4.98753 5.00058 5.03047 5.04086 5.20068 5.37515 5.42978 5.50607 5.61637 5.87957 5.96662 6.05061 6.13521 6.32044 6.60068 7.18759 8.77091 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016852 B = 0.002576 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.141105 B =10865.166490 C =11532.179880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.549 5.549 3 C 0.017 3.983 4 C 0.091 3.909 5 C -0.095 4.095 6 C -0.059 4.059 7 C -0.121 4.121 8 C -0.077 4.077 9 C -0.161 4.161 10 C 0.579 3.421 11 O -0.529 6.529 12 N -1.035 6.035 13 S 2.605 3.395 14 O -0.959 6.959 15 O -0.970 6.970 16 C -0.580 4.580 17 C -0.014 4.014 18 C -0.530 4.530 19 H 0.046 0.954 20 C 0.013 3.987 21 N -0.939 5.939 22 Si 0.928 3.072 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.244 1.244 26 C -0.064 4.064 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.084 0.916 30 H 0.024 0.976 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.108 0.892 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.448 0.552 39 H 0.131 0.869 40 H 0.151 0.849 41 H 0.044 0.956 42 H 0.030 0.970 43 H 0.271 0.729 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.377 -15.730 -22.171 31.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.273 5.273 3 C -0.131 4.131 4 C -0.036 4.036 5 C -0.096 4.096 6 C -0.077 4.077 7 C -0.139 4.139 8 C -0.096 4.096 9 C -0.166 4.166 10 C 0.370 3.630 11 O -0.405 6.405 12 N -0.801 5.801 13 S 2.703 3.297 14 O -0.950 6.950 15 O -0.960 6.960 16 C -0.712 4.712 17 C -0.054 4.054 18 C -0.569 4.569 19 H 0.065 0.935 20 C -0.186 4.186 21 N -0.579 5.579 22 Si 0.750 3.250 23 H -0.189 1.189 24 H -0.196 1.196 25 H -0.167 1.167 26 C -0.083 4.083 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.126 0.874 35 H 0.174 0.826 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.289 0.711 39 H 0.149 0.851 40 H 0.169 0.831 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.080 0.920 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.922 -14.645 -22.572 31.265 hybrid contribution 0.143 0.810 1.569 1.771 sum -15.778 -13.836 -21.003 29.690 Atomic orbital electron populations 1.22463 0.85720 1.03379 1.00927 1.62059 1.08983 1.13759 1.42467 1.22480 1.00699 0.88981 1.00983 1.21141 0.90507 1.00145 0.91819 1.19825 0.95327 0.95222 0.99198 1.21652 0.96384 0.96014 0.93671 1.21531 0.92703 0.99957 0.99665 1.21696 1.02007 0.91744 0.94119 1.19628 0.93202 0.97417 1.06371 1.18787 0.81843 0.85308 0.77111 1.90961 1.77630 1.30753 1.41121 1.54761 1.17445 1.42406 1.65535 1.05281 0.72865 0.73400 0.78158 1.93585 1.38358 1.80339 1.82676 1.93567 1.80581 1.43272 1.78622 1.30182 1.10274 1.10462 1.20289 1.19388 0.95216 0.94310 0.96456 1.21115 1.23292 1.22516 0.89943 0.93545 1.25903 0.98871 0.98747 0.95052 1.70009 1.42808 1.41141 1.03928 0.85986 0.79330 0.79839 0.79864 1.18870 1.19559 1.16748 1.21222 0.91753 0.98483 0.96881 0.90717 0.95614 0.89764 0.95774 0.92216 0.90537 0.94273 0.87379 0.82594 0.81506 0.82627 0.71086 0.85098 0.83143 0.93810 0.95221 0.92015 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 127.69 1.22 1.45 16 2 N -0.55 -7.85 5.01 -953.46 -4.78 -12.63 16 3 C 0.02 0.28 9.25 127.69 1.18 1.46 16 4 C 0.09 1.21 5.12 85.56 0.44 1.64 16 5 C -0.10 -1.46 4.89 -19.90 -0.10 -1.56 16 6 C -0.06 -0.62 9.69 22.33 0.22 -0.41 16 7 C -0.12 -1.12 10.03 22.23 0.22 -0.90 16 8 C -0.08 -1.01 9.54 22.52 0.21 -0.79 16 9 C -0.16 -3.37 5.87 -20.09 -0.12 -3.49 16 10 C 0.58 16.05 7.51 86.79 0.65 16.70 16 11 O -0.53 -19.29 14.45 12.50 0.18 -19.11 16 12 N -1.03 -24.99 5.55 -175.61 -0.98 -25.96 16 13 S 2.61 88.51 5.11 -56.49 -0.29 88.22 16 14 O -0.96 -33.85 18.08 -127.65 -2.31 -36.16 16 15 O -0.97 -40.48 17.04 -120.72 -2.06 -42.54 16 16 C -0.58 -22.39 5.82 71.99 0.42 -21.97 16 17 C -0.01 -0.70 4.05 29.85 0.12 -0.58 16 18 C -0.53 -30.86 9.66 25.60 0.25 -30.61 16 19 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 20 C 0.01 0.76 5.47 84.65 0.46 1.23 16 21 N -0.94 -58.74 13.96 21.45 0.30 -58.44 16 22 Si 0.93 44.43 27.47 68.60 1.88 46.31 16 23 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.24 -10.90 6.54 99.48 0.65 -10.25 16 26 C -0.06 -1.33 7.44 22.53 0.17 -1.16 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 0.61 8.12 -2.38 -0.02 0.59 16 30 H 0.02 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.06 1.17 5.89 -2.39 -0.01 1.16 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 0.59 8.06 -2.38 -0.02 0.57 16 34 H 0.11 0.95 8.00 -2.39 -0.02 0.93 16 35 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 37 H 0.16 1.08 6.41 -2.91 -0.02 1.07 16 38 H 0.45 6.52 6.82 -96.75 -0.66 5.86 16 39 H 0.13 5.22 7.19 -2.39 -0.02 5.21 16 40 H 0.15 4.98 8.14 -2.39 -0.02 4.96 16 41 H 0.04 2.02 7.20 -2.39 -0.02 2.00 16 42 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.12 2.83 7.57 -2.91 -0.02 2.81 16 Total: -1.00 -82.39 377.28 -2.39 -84.78 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.30 Total: 14.53 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 5.35 Total: -39.00 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -5.45 Total: -97.03 kcal Atomic # 8 Polarization: -93.62 SS G_CDS: -4.18 Total: -97.81 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 16 Polarization: 88.51 SS G_CDS: -0.29 Total: 88.22 kcal Total: -82.39 -2.39 -84.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835274125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.629 kcal (2) G-P(sol) polarization free energy of solvation -82.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds