Wall clock time and date at job start Sat Apr 11 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42892 * 109.47293 * 2 1 4 4 C 1.42900 * 114.00220 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47421 * 180.02562 * 4 3 2 6 6 N 1.46493 * 109.47156 * 64.99851 * 5 4 3 7 7 C 1.46506 * 119.99811 * 90.00429 * 6 5 4 8 8 C 1.50703 * 109.47289 * 89.99713 * 7 6 5 9 9 O 1.21279 * 119.99926 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99773 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99642 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.47106 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99515 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00176 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00145 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47011 * 90.00027 * 16 14 12 18 18 H 1.48498 * 109.47118 * 209.99885 * 16 14 12 19 19 H 1.48494 * 109.47201 * 330.00053 * 16 14 12 20 20 C 1.39743 * 120.00278 * 270.00098 * 6 5 4 21 21 C 1.38891 * 120.05980 * 359.72676 * 20 6 5 22 22 C 1.38110 * 119.93965 * 179.72569 * 21 20 6 23 23 C 1.38382 * 120.05465 * 0.54535 * 22 21 20 24 24 Cl 1.73602 * 119.93263 * 179.70462 * 23 22 21 25 25 C 1.38374 * 120.12668 * 359.73144 * 23 22 21 26 26 C 1.38110 * 120.06293 * 359.97438 * 25 23 22 27 27 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47113 * 300.00198 * 1 2 3 29 29 H 1.09003 * 109.46849 * 59.99820 * 1 2 3 30 30 H 1.09000 * 109.47113 * 239.99802 * 2 1 3 31 31 H 1.09003 * 109.46849 * 120.00180 * 2 1 3 32 32 H 1.09006 * 109.46976 * 59.99842 * 4 3 2 33 33 H 1.09002 * 109.47112 * 300.00575 * 4 3 2 34 34 H 1.09006 * 109.46591 * 304.99606 * 5 4 3 35 35 H 1.09005 * 109.46719 * 185.00366 * 5 4 3 36 36 H 1.09001 * 109.47060 * 210.00163 * 7 6 5 37 37 H 1.09004 * 109.47073 * 329.99652 * 7 6 5 38 38 H 0.96998 * 120.00166 * 0.02562 * 10 8 7 39 39 H 1.08998 * 109.47245 * 299.99628 * 11 10 8 40 40 H 1.09001 * 109.47464 * 60.00642 * 11 10 8 41 41 H 0.96999 * 120.00284 * 179.97438 * 15 14 12 42 42 H 1.08002 * 120.03067 * 359.97150 * 21 20 6 43 43 H 1.07993 * 119.97204 * 180.25370 * 22 21 20 44 44 H 1.08010 * 119.96928 * 179.97438 * 25 23 22 45 45 H 1.08001 * 120.02956 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 7 3.3870 3.5602 1.2529 7 6 4.2786 3.5746 2.4154 8 6 5.1233 4.8223 2.3852 9 8 4.9931 5.6211 1.4820 10 7 6.0227 5.0509 3.3626 11 6 6.8434 6.2640 3.3336 12 6 7.7606 6.2787 4.5293 13 1 7.7344 5.4658 5.2399 14 6 8.6331 7.3297 4.7160 15 7 8.6647 8.3198 3.8509 16 14 9.7695 7.3483 6.1985 17 1 11.0465 6.6744 5.8517 18 1 10.0428 8.7530 6.5951 19 1 9.1225 6.6322 7.3271 20 6 2.1183 4.1399 1.3382 21 6 1.2743 4.1321 0.2352 22 6 0.0188 4.7007 0.3240 23 6 -0.3941 5.2878 1.5071 24 17 -1.9700 6.0083 1.6128 25 6 0.4470 5.3021 2.6058 26 6 1.7012 4.7296 2.5245 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8341 0.9763 -0.8892 33 1 3.8334 0.9765 0.8908 34 1 3.3501 3.4415 -0.8408 35 1 4.9084 3.0253 -0.0880 36 1 3.6845 3.5600 3.3291 37 1 4.9251 2.6974 2.3883 38 1 6.1266 4.4122 4.0852 39 1 7.4378 6.2788 2.4201 40 1 6.1967 7.1410 3.3606 41 1 9.2783 9.0594 3.9824 42 1 1.5979 3.6783 -0.6898 43 1 -0.6395 4.6912 -0.5321 44 1 0.1223 5.7614 3.5279 45 1 2.3573 4.7414 3.3823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839665347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:30 Heat of formation + Delta-G solvation = -79.530225 kcal Electronic energy + Delta-G solvation = -27219.963548 eV Core-core repulsion = 23262.595576 eV Total energy + Delta-G solvation = -3957.367972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13184 -39.96349 -38.92507 -37.56904 -36.58487 -36.01090 -34.34264 -32.88041 -31.97178 -31.02233 -30.58061 -29.08943 -27.07154 -24.74450 -24.11345 -23.59466 -23.11906 -21.92816 -21.08584 -19.11219 -18.78090 -17.75185 -17.61428 -17.22739 -17.10756 -16.63767 -16.57935 -16.13738 -15.88437 -15.52089 -15.33880 -15.02935 -14.60173 -14.52473 -14.29559 -14.04900 -13.98203 -13.96018 -13.52086 -13.14566 -12.95105 -12.90803 -12.81124 -12.71540 -12.63852 -12.42756 -12.30622 -12.22791 -12.04992 -11.88034 -11.51282 -11.47639 -11.07129 -10.79983 -10.42413 -10.35678 -9.89492 -9.79889 -8.30074 -8.18567 -6.45469 0.47525 0.52365 1.37398 1.43255 1.45381 1.56563 1.79170 1.96295 2.35313 2.67911 2.84818 2.92987 3.06252 3.80138 3.94286 4.01009 4.09152 4.18646 4.20685 4.25759 4.32189 4.41851 4.48005 4.51448 4.54564 4.58579 4.61689 4.70951 4.90552 4.94233 5.08567 5.10793 5.12548 5.24750 5.25576 5.30448 5.33282 5.46867 5.49991 5.70216 5.76854 5.85978 6.22065 6.42032 6.47410 6.66590 6.96069 7.24559 7.54075 8.83157 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.002754 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.920873 B =10166.410147 C =12023.534912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.395 6.395 4 C 0.049 3.951 5 C 0.123 3.877 6 N -0.601 5.601 7 C 0.114 3.886 8 C 0.471 3.529 9 O -0.592 6.592 10 N -0.707 5.707 11 C 0.270 3.730 12 C -0.553 4.553 13 H 0.086 0.914 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.983 3.017 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.254 1.254 20 C 0.230 3.770 21 C -0.162 4.162 22 C -0.069 4.069 23 C -0.105 4.105 24 Cl -0.086 7.086 25 C -0.073 4.073 26 C -0.200 4.200 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.139 0.861 38 H 0.409 0.591 39 H -0.015 1.015 40 H -0.018 1.018 41 H 0.268 0.732 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.321 -19.688 -5.578 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.315 6.315 4 C -0.029 4.029 5 C 0.001 3.999 6 N -0.309 5.309 7 C -0.013 4.013 8 C 0.257 3.743 9 O -0.473 6.473 10 N -0.358 5.358 11 C 0.146 3.854 12 C -0.591 4.591 13 H 0.104 0.896 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.806 3.194 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.178 1.178 20 C 0.127 3.873 21 C -0.184 4.184 22 C -0.089 4.089 23 C -0.134 4.134 24 Cl -0.058 7.058 25 C -0.092 4.092 26 C -0.223 4.223 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.245 0.755 39 H 0.003 0.997 40 H 0.000 1.000 41 H 0.077 0.923 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.154 0.846 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.413 -18.828 -6.270 25.752 hybrid contribution 0.904 0.454 0.776 1.275 sum -15.509 -18.374 -5.495 24.664 Atomic orbital electron populations 1.21711 0.93698 1.02763 1.02271 1.22533 0.95724 0.83475 1.00420 1.87984 1.21004 1.27009 1.95497 1.23042 0.81918 0.96271 1.01659 1.21619 1.00349 0.91838 0.86129 1.46107 1.11904 1.60485 1.12377 1.21451 0.93244 0.95112 0.91542 1.22339 0.80872 0.89540 0.81539 1.90662 1.69394 1.49681 1.37514 1.46208 1.38335 1.24602 1.26677 1.18459 0.88607 0.82405 0.95892 1.21636 1.20650 1.07786 1.09047 0.89621 1.26065 0.98984 0.94545 1.00100 1.70141 1.38353 1.10573 1.38061 0.85182 0.78407 0.77422 0.78374 1.19552 1.21241 1.17781 1.17941 0.85180 0.90449 0.93715 1.20685 0.93988 1.05293 0.98477 1.20913 0.95889 0.95676 0.96373 1.20670 0.88506 1.07195 0.97009 1.98318 1.26143 1.82771 1.98540 1.20857 0.92667 0.97717 0.97982 1.20725 0.97655 1.05853 0.98050 0.89692 0.93240 0.92381 0.92528 0.93313 0.90674 0.92250 0.90310 0.88912 0.85889 0.84338 0.75490 0.99698 1.00038 0.92346 0.84231 0.83957 0.84553 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 71.99 0.74 -1.17 16 2 C 0.05 0.74 6.66 71.99 0.48 1.22 16 3 O -0.40 -7.12 8.19 -148.98 -1.22 -8.34 16 4 C 0.05 0.73 6.28 71.98 0.45 1.18 16 5 C 0.12 2.51 5.72 86.38 0.49 3.00 16 6 N -0.60 -14.90 2.07 -701.57 -1.45 -16.35 16 7 C 0.11 2.67 5.64 85.63 0.48 3.15 16 8 C 0.47 17.37 7.90 87.66 0.69 18.07 16 9 O -0.59 -28.28 16.43 -3.03 -0.05 -28.33 16 10 N -0.71 -27.91 5.55 -466.79 -2.59 -30.49 16 11 C 0.27 14.48 5.43 85.64 0.46 14.94 16 12 C -0.55 -29.41 9.28 25.60 0.24 -29.18 16 13 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 14 C 0.00 0.14 5.46 84.65 0.46 0.60 16 15 N -0.93 -56.15 13.29 21.44 0.28 -55.86 16 16 Si 0.98 41.74 29.54 68.60 2.03 43.77 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 20 C 0.23 6.32 6.30 38.19 0.24 6.56 16 21 C -0.16 -4.14 8.06 22.40 0.18 -3.96 16 22 C -0.07 -1.70 9.82 22.27 0.22 -1.48 16 23 C -0.11 -2.74 6.32 22.34 0.14 -2.60 16 24 Cl -0.09 -2.03 28.95 -2.72 -0.08 -2.11 16 25 C -0.07 -1.95 9.82 22.27 0.22 -1.73 16 26 C -0.20 -5.61 9.21 22.40 0.21 -5.40 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.70 6.19 -2.38 -0.01 1.68 16 35 H 0.09 1.86 8.07 -2.38 -0.02 1.84 16 36 H 0.12 2.42 6.20 -2.39 -0.01 2.40 16 37 H 0.14 2.21 8.07 -2.38 -0.02 2.19 16 38 H 0.41 12.81 8.32 -92.71 -0.77 12.04 16 39 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 41 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.14 3.25 5.53 -2.91 -0.02 3.24 16 43 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 45 H 0.13 3.38 6.14 -2.91 -0.02 3.36 16 Total: -1.00 -74.32 391.33 2.86 -71.46 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.23 Total: 23.07 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.71 Total: 3.20 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -3.76 Total: -102.71 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.27 Total: -36.67 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.11 kcal Total: -74.32 2.86 -71.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839665347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.070 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds