Wall clock time and date at job start Sat Apr 11 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65601 * 119.99769 * 2 1 4 4 O 1.42099 * 104.27718 * 308.93086 * 3 2 1 5 5 O 1.42099 * 104.27599 * 181.06811 * 3 2 1 6 6 C 1.81403 * 104.44925 * 65.00076 * 3 2 1 7 7 C 1.53001 * 109.47095 * 180.02562 * 6 3 2 8 8 C 1.52996 * 109.47010 * 179.97438 * 7 6 3 9 9 N 1.46507 * 109.47103 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00266 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.09002 * 109.47580 * 299.99906 * 1 2 3 28 28 H 1.09001 * 109.47316 * 60.00341 * 1 2 3 29 29 H 1.09003 * 109.47259 * 180.02562 * 1 2 3 30 30 H 0.96993 * 120.00005 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47269 * 60.00092 * 6 3 2 32 32 H 1.08998 * 109.46963 * 299.99624 * 6 3 2 33 33 H 1.08992 * 109.47153 * 59.99642 * 7 6 3 34 34 H 1.09003 * 109.46640 * 300.00064 * 7 6 3 35 35 H 1.09001 * 109.47212 * 60.00084 * 8 7 6 36 36 H 1.08991 * 109.47261 * 299.99917 * 8 7 6 37 37 H 0.97000 * 119.99705 * 0.02562 * 9 8 7 38 38 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 39 39 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 40 40 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 41 41 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 42 42 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 43 43 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 44 44 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7187 2.1703 -1.0713 5 8 3.6606 1.0493 -0.0257 6 6 1.8763 2.1973 1.5921 7 6 2.5888 3.5459 1.7132 8 6 2.2369 4.1898 3.0557 9 7 2.9197 5.4809 3.1719 10 6 2.7571 6.2319 4.2791 11 8 2.0452 5.8391 5.1791 12 6 3.4589 7.5601 4.3984 13 6 3.1124 8.1944 5.7209 14 6 2.0782 9.0989 5.8033 15 6 1.7616 9.6887 7.0171 16 6 2.4766 9.3707 8.1618 17 6 3.5104 8.4645 8.1040 18 6 3.8406 7.8594 6.8770 19 6 4.9005 6.9261 6.8058 20 1 4.9081 6.1761 6.0287 21 6 5.9394 6.9743 7.7421 22 7 6.2248 8.0996 8.3453 23 14 6.9189 5.4318 8.1306 24 1 7.9552 5.7463 9.1467 25 1 6.0067 4.3866 8.6603 26 1 7.5738 4.9365 6.8932 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.9500 -0.8400 0.0004 31 1 2.1958 1.5431 2.4033 32 1 0.7987 2.3497 1.6510 33 1 2.2691 4.1999 0.9020 34 1 3.6666 3.3939 1.6540 35 1 2.5564 3.5360 3.8671 36 1 1.1593 4.3418 3.1144 37 1 3.4887 5.7951 2.4520 38 1 3.1390 8.2142 3.5872 39 1 4.5365 7.4083 4.3392 40 1 1.5142 9.3535 4.9182 41 1 0.9518 10.4011 7.0717 42 1 2.2211 9.8360 9.1023 43 1 4.0657 8.2180 8.9969 44 1 5.7744 8.9179 8.0836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863430793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:36 Heat of formation + Delta-G solvation = -135.941245 kcal Electronic energy + Delta-G solvation = -26587.028150 eV Core-core repulsion = 22629.257718 eV Total energy + Delta-G solvation = -3957.770431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85555 -39.35989 -38.20821 -37.08874 -36.86306 -35.84798 -35.73060 -34.01811 -33.30325 -31.09808 -29.14994 -27.33343 -26.78502 -26.54056 -23.20301 -22.82095 -22.30481 -21.13338 -20.29610 -19.60899 -18.77668 -17.86758 -17.77161 -17.40460 -17.03002 -16.81411 -16.50667 -16.35742 -15.85700 -15.69082 -15.49948 -15.13202 -14.67782 -14.61278 -14.20201 -13.92156 -13.81304 -13.77026 -13.70894 -13.47828 -13.23006 -13.12467 -13.06603 -12.97520 -12.75134 -12.59751 -12.51028 -12.23915 -12.12655 -11.98402 -11.75520 -11.47870 -11.21053 -10.85838 -10.81210 -10.43299 -10.05914 -9.43858 -9.42227 -9.04922 -6.38893 -0.76117 0.91752 0.99469 1.47606 1.62687 1.76510 1.78380 1.79275 2.29241 2.32207 2.72130 2.80763 3.23541 3.52640 3.64786 3.77301 3.80595 4.09104 4.22458 4.27883 4.31461 4.39870 4.47250 4.51078 4.58494 4.63878 4.72478 4.74660 4.86994 4.92174 4.96925 5.02454 5.04118 5.08683 5.33390 5.49946 5.51097 5.80729 5.84943 5.99610 6.06005 6.10576 6.30249 6.46010 6.63558 6.87407 7.03064 7.39999 8.09249 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.002396 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.067502 B =11681.741899 C =13006.393435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.119 6.119 3 S 2.632 3.368 4 O -0.991 6.991 5 O -0.995 6.995 6 C -0.615 4.615 7 C -0.127 4.127 8 C 0.126 3.874 9 N -0.728 5.728 10 C 0.516 3.484 11 O -0.575 6.575 12 C -0.071 4.071 13 C -0.191 4.191 14 C -0.080 4.080 15 C -0.252 4.252 16 C -0.097 4.097 17 C -0.246 4.246 18 C 0.085 3.915 19 C -0.540 4.540 20 H 0.069 0.931 21 C 0.004 3.996 22 N -0.820 5.820 23 Si 1.107 2.893 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.253 1.253 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.425 0.575 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.416 0.584 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.414 -15.004 -17.060 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.881 5.881 3 S 2.726 3.274 4 O -0.981 6.981 5 O -0.985 6.985 6 C -0.746 4.746 7 C -0.166 4.166 8 C 0.001 3.999 9 N -0.383 5.383 10 C 0.304 3.696 11 O -0.453 6.453 12 C -0.111 4.111 13 C -0.193 4.193 14 C -0.098 4.098 15 C -0.271 4.271 16 C -0.115 4.115 17 C -0.265 4.265 18 C 0.082 3.918 19 C -0.569 4.569 20 H 0.087 0.913 21 C -0.212 4.212 22 N -0.444 5.444 23 Si 0.925 3.075 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.177 1.177 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.260 0.740 31 H 0.174 0.826 32 H 0.178 0.822 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.252 0.748 38 H 0.133 0.867 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.127 0.873 43 H 0.101 0.899 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.283 -15.376 -16.171 23.473 hybrid contribution -1.184 0.605 -0.154 1.338 sum -8.467 -14.772 -16.325 23.588 Atomic orbital electron populations 1.21791 0.77477 1.05979 1.02584 1.55142 1.16770 1.24026 1.92129 1.04162 0.72628 0.73813 0.76838 1.93564 1.79167 1.73433 1.51944 1.93571 1.35162 1.81869 1.87926 1.30430 1.12974 1.07843 1.23355 1.21534 1.02174 0.94452 0.98461 1.21271 0.97526 0.84005 0.97079 1.45925 1.51279 1.20782 1.20281 1.21092 0.80571 0.86797 0.81158 1.90663 1.40531 1.73484 1.40632 1.20287 1.01440 0.92855 0.96471 1.19537 1.02491 1.03274 0.93961 1.20813 0.95559 0.96088 0.97376 1.20723 1.05060 1.07866 0.93402 1.20897 0.95430 0.97179 0.98044 1.21151 1.02722 1.05616 0.97053 1.17795 0.92394 0.90519 0.91091 1.20540 1.06567 1.14629 1.15141 0.91253 1.28228 0.97293 1.04413 0.91302 1.70555 1.36480 1.00747 1.36603 0.83134 0.75189 0.70803 0.78370 1.19520 1.19960 1.17656 0.90245 0.92153 0.87899 0.73952 0.82582 0.82233 0.88166 0.88839 0.92461 0.91427 0.74772 0.86720 0.88628 0.86215 0.86328 0.87315 0.89912 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.03 127.77 1.41 1.72 16 2 N -1.12 -9.07 6.08 -206.53 -1.25 -10.33 16 3 S 2.63 35.97 5.46 -56.49 -0.31 35.66 16 4 O -0.99 -20.65 17.73 -127.65 -2.26 -22.92 16 5 O -0.99 -21.31 18.08 -127.65 -2.31 -23.62 16 6 C -0.61 -5.68 6.03 71.98 0.43 -5.25 16 7 C -0.13 -1.77 5.34 30.59 0.16 -1.60 16 8 C 0.13 2.72 5.67 86.38 0.49 3.21 16 9 N -0.73 -18.70 5.56 -463.07 -2.57 -21.28 16 10 C 0.52 19.18 7.46 87.66 0.65 19.83 16 11 O -0.57 -27.29 16.03 -3.04 -0.05 -27.33 16 12 C -0.07 -2.65 5.18 29.10 0.15 -2.50 16 13 C -0.19 -9.06 4.43 -19.40 -0.09 -9.15 16 14 C -0.08 -3.54 9.66 22.22 0.21 -3.32 16 15 C -0.25 -11.21 10.05 22.46 0.23 -10.98 16 16 C -0.10 -4.70 10.02 22.22 0.22 -4.48 16 17 C -0.25 -13.45 7.95 22.73 0.18 -13.27 16 18 C 0.08 4.60 5.30 -21.29 -0.11 4.49 16 19 C -0.54 -29.18 8.08 23.46 0.19 -28.99 16 20 H 0.07 3.65 6.73 -2.91 -0.02 3.63 16 21 C 0.00 0.19 4.94 85.25 0.42 0.61 16 22 N -0.82 -45.16 12.31 21.82 0.27 -44.89 16 23 Si 1.11 44.65 30.00 68.60 2.06 46.70 16 24 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 27 H 0.08 0.07 7.73 -2.39 -0.02 0.05 16 28 H 0.06 0.40 8.04 -2.39 -0.02 0.39 16 29 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.43 2.38 8.92 -96.75 -0.86 1.52 16 31 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.16 0.74 7.77 -2.39 -0.02 0.73 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.42 7.66 8.47 -92.71 -0.79 6.87 16 38 H 0.11 3.32 8.05 -2.39 -0.02 3.30 16 39 H 0.10 3.58 7.06 -2.39 -0.02 3.56 16 40 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 41 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 42 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 43 H 0.08 4.76 6.49 -2.91 -0.02 4.74 16 44 H 0.28 16.23 6.68 -92.71 -0.62 15.61 16 Total: -1.00 -83.88 382.69 -2.34 -86.21 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -0.47 Total: 31.45 kcal Atomic # 6 Polarization: -54.23 SS G_CDS: 4.56 Total: -49.67 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -3.56 Total: -76.49 kcal Atomic # 8 Polarization: -69.25 SS G_CDS: -4.62 Total: -73.87 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.06 Total: 46.70 kcal Atomic # 16 Polarization: 35.97 SS G_CDS: -0.31 Total: 35.66 kcal Total: -83.88 -2.34 -86.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863430793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.727 kcal (2) G-P(sol) polarization free energy of solvation -83.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds