Wall clock time and date at job start Sat Apr 11 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00004 * 2 1 4 4 O 1.20826 * 119.99808 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00139 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47280 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47394 * 179.97438 * 6 5 3 8 8 C 1.36875 * 120.00583 * 270.00205 * 7 6 5 9 9 H 1.08007 * 120.00524 * 129.16357 * 8 7 6 10 10 C 1.39010 * 120.00167 * 309.17345 * 8 7 6 11 11 N 1.31397 * 119.99365 * 354.06362 * 10 8 7 12 12 Si 1.86790 * 120.00214 * 174.06920 * 10 8 7 13 13 H 1.48490 * 109.47527 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47212 * 120.00056 * 12 10 8 15 15 H 1.48502 * 109.47313 * 239.99592 * 12 10 8 16 16 C 1.34782 * 119.99739 * 90.00108 * 7 6 5 17 17 O 1.21747 * 119.99771 * 3.98600 * 16 7 6 18 18 C 1.46456 * 120.00085 * 183.98936 * 16 7 6 19 19 S 1.75833 * 125.46094 * 352.61847 * 18 16 7 20 20 C 1.70613 * 91.56589 * 180.02562 * 19 18 16 21 21 C 1.33851 * 110.97254 * 0.02562 * 20 19 18 22 22 C 1.36772 * 125.46293 * 172.62534 * 18 16 7 23 23 C 1.50699 * 123.36079 * 0.02562 * 22 18 16 24 24 N 1.46900 * 109.47010 * 79.95168 * 23 22 18 25 25 C 1.46904 * 110.99713 * 66.04973 * 24 23 22 26 26 C 1.46897 * 110.99857 * 189.99601 * 24 23 22 27 27 H 1.09006 * 109.46860 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47626 * 300.00222 * 1 2 3 29 29 H 1.08998 * 109.46637 * 60.00333 * 1 2 3 30 30 H 1.08998 * 109.47332 * 60.00248 * 5 3 2 31 31 H 1.09007 * 109.47725 * 300.00416 * 5 3 2 32 32 H 1.09001 * 109.47569 * 60.00386 * 6 5 3 33 33 H 1.09000 * 109.47343 * 300.00192 * 6 5 3 34 34 H 0.97005 * 119.99847 * 185.00769 * 11 10 8 35 35 H 1.07997 * 124.51162 * 180.02562 * 20 19 18 36 36 H 1.08000 * 122.44482 * 179.97438 * 21 20 19 37 37 H 1.08996 * 109.46854 * 199.95348 * 23 22 18 38 38 H 1.08998 * 109.47048 * 319.95344 * 23 22 18 39 39 H 1.08993 * 109.47464 * 59.99918 * 25 24 23 40 40 H 1.09004 * 109.46780 * 179.97438 * 25 24 23 41 41 H 1.08997 * 109.46467 * 299.99391 * 25 24 23 42 42 H 1.09004 * 109.46819 * 60.00116 * 26 24 23 43 43 H 1.08997 * 109.47205 * 179.97438 * 26 24 23 44 44 H 1.08999 * 109.47775 * 300.00933 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4631 2.8188 0.0023 8 6 6.1457 2.8545 1.1881 9 1 6.9641 2.1712 1.3610 10 6 5.7855 3.7700 2.1702 11 7 4.8693 4.6774 1.9180 12 14 6.6042 3.7104 3.8481 13 1 7.5938 2.6037 3.8770 14 1 7.2945 4.9993 4.1082 15 1 5.5747 3.4806 4.8934 16 6 6.1370 2.8542 -1.1644 17 8 5.5282 2.8958 -2.2180 18 6 7.6015 2.8427 -1.1649 19 16 8.6230 2.9689 0.2607 20 6 10.0382 2.8693 -0.6871 21 6 9.7375 2.7501 -1.9860 22 6 8.3938 2.7321 -2.2742 23 6 7.8480 2.6054 -3.6732 24 7 7.4566 3.9320 -4.1681 25 6 8.6299 4.8013 -4.3282 26 6 6.7058 3.8240 -5.4261 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 3.9564 0.7806 -0.8891 31 1 3.9558 0.7809 0.8908 32 1 3.6101 3.2360 0.8911 33 1 3.6107 3.2364 -0.8889 34 1 4.6696 5.3611 2.5766 35 1 11.0428 2.8985 -0.2917 36 1 10.4955 2.6731 -2.7515 37 1 8.6139 2.1857 -4.3253 38 1 6.9777 1.9491 -3.6655 39 1 9.3205 4.3519 -5.0417 40 1 8.3117 5.7768 -4.6961 41 1 9.1278 4.9203 -3.3659 42 1 5.8051 3.2324 -5.2621 43 1 6.4281 4.8203 -5.7701 44 1 7.3267 3.3391 -6.1794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:56 Heat of formation + Delta-G solvation = -73.776588 kcal Electronic energy + Delta-G solvation = -28298.359899 eV Core-core repulsion = 24343.285129 eV Total energy + Delta-G solvation = -3955.074770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.06199 -38.91950 -37.68483 -36.16855 -35.66626 -34.81384 -32.19306 -30.90072 -29.43452 -27.72431 -27.17613 -26.82877 -25.26481 -23.88512 -22.86240 -21.06256 -20.56785 -19.68745 -18.45917 -17.41640 -17.23222 -16.26836 -16.17681 -16.07729 -15.28634 -15.02183 -14.81649 -14.55675 -14.37405 -13.99930 -13.69531 -13.67553 -13.55119 -12.98494 -12.51755 -12.30756 -12.20785 -12.17385 -12.03590 -11.84854 -11.65754 -11.55931 -11.32701 -11.24162 -11.21802 -11.08329 -10.90214 -10.85110 -10.55421 -10.45276 -10.10119 -10.05059 -9.82815 -9.04893 -8.54806 -7.93134 -7.79980 -7.62880 -7.39783 -6.55838 -4.45632 1.48028 2.55753 2.65846 2.95229 3.02745 3.08116 3.11206 3.14465 3.17139 3.92078 4.36327 4.64959 4.71426 4.84184 5.23064 5.29845 5.29938 5.47432 5.53015 5.59991 5.62640 5.68647 5.78781 5.80927 5.87725 5.90526 5.99745 6.06325 6.23542 6.25975 6.29315 6.31612 6.36244 6.70506 6.72505 6.85420 7.08692 7.11625 7.15890 7.35643 7.55460 7.59517 7.88146 8.12497 8.18656 8.84218 9.36556 9.81122 10.44203 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008848 B = 0.005085 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.635466 B = 5504.776136 C = 7776.498398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.125 4.125 6 C 0.137 3.863 7 N -0.442 5.442 8 C -0.351 4.351 9 H 0.098 0.902 10 C 0.065 3.935 11 N -0.838 5.838 12 Si 0.902 3.098 13 H -0.257 1.257 14 H -0.272 1.272 15 H -0.274 1.274 16 C 0.550 3.450 17 O -0.565 6.565 18 C -0.196 4.196 19 S 0.284 5.716 20 C -0.327 4.327 21 C -0.147 4.147 22 C -0.073 4.073 23 C 0.130 3.870 24 N -0.521 5.521 25 C 0.026 3.974 26 C 0.034 3.966 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.277 0.723 35 H 0.144 0.856 36 H 0.115 0.885 37 H 0.024 0.976 38 H 0.092 0.908 39 H 0.014 0.986 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 -5.894 -3.452 7.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.164 4.164 6 C 0.013 3.987 7 N -0.162 5.162 8 C -0.484 4.484 9 H 0.114 0.886 10 C -0.146 4.146 11 N -0.470 5.470 12 Si 0.727 3.273 13 H -0.181 1.181 14 H -0.198 1.198 15 H -0.200 1.200 16 C 0.339 3.661 17 O -0.449 6.449 18 C -0.318 4.318 19 S 0.559 5.441 20 C -0.464 4.464 21 C -0.179 4.179 22 C -0.088 4.088 23 C 0.001 3.999 24 N -0.244 5.244 25 C -0.122 4.122 26 C -0.114 4.114 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.162 0.838 36 H 0.133 0.867 37 H 0.042 0.958 38 H 0.110 0.890 39 H 0.033 0.967 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 1.563 -5.055 -1.956 5.642 hybrid contribution 1.243 -0.307 -1.224 1.771 sum 2.806 -5.362 -3.180 6.837 Atomic orbital electron populations 1.23165 0.77378 1.03009 1.02338 1.86539 1.22739 1.34462 1.84669 1.24078 0.92399 0.80875 0.71748 1.90656 1.67270 1.36221 1.45017 1.21938 0.85805 1.03466 1.05204 1.21090 0.82055 0.90569 1.05008 1.43082 1.04310 1.64522 1.04265 1.19290 1.16130 1.19992 0.93027 0.88565 1.25645 0.95163 0.93844 0.99989 1.69789 1.28365 1.12906 1.35959 0.86214 0.79850 0.79427 0.81841 1.18102 1.19766 1.19983 1.17336 0.84826 0.79449 0.84468 1.90687 1.68636 1.54284 1.31260 1.24530 0.98129 1.12749 0.96400 1.84493 0.89522 1.63764 1.06290 1.26342 1.07954 1.10789 1.01269 1.19533 0.95132 1.07275 0.95938 1.19004 0.91887 1.03156 0.94761 1.20564 0.98709 0.90466 0.90201 1.61768 1.22279 1.12216 1.28162 1.22391 0.92040 0.96897 1.00891 1.22280 0.98288 1.01447 0.89383 0.88651 0.92160 0.92184 0.88524 0.87688 0.87446 0.91248 0.91223 0.83802 0.86703 0.95781 0.88956 0.96717 0.92167 0.91259 0.90971 0.92072 0.96883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.83 10.57 -39.25 -0.41 -6.24 16 3 C 0.47 8.69 7.96 36.00 0.29 8.97 16 4 O -0.50 -10.75 15.73 -18.75 -0.29 -11.04 16 5 C -0.13 -2.38 6.13 -27.89 -0.17 -2.55 16 6 C 0.14 3.15 4.30 -4.04 -0.02 3.14 16 7 N -0.44 -10.52 2.43 -116.37 -0.28 -10.80 16 8 C -0.35 -8.12 6.76 -15.01 -0.10 -8.22 16 9 H 0.10 2.13 5.43 -32.91 -0.18 1.95 16 10 C 0.07 1.53 5.21 -17.45 -0.09 1.44 16 11 N -0.84 -21.12 11.55 55.50 0.64 -20.48 16 12 Si 0.90 17.88 29.56 -169.99 -5.02 12.86 16 13 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 C 0.55 13.20 7.58 -12.95 -0.10 13.10 16 17 O -0.56 -14.23 13.88 5.15 0.07 -14.15 16 18 C -0.20 -4.22 6.30 -36.80 -0.23 -4.45 16 19 S 0.28 5.43 18.39 -107.50 -1.98 3.45 16 20 C -0.33 -5.47 10.92 29.19 0.32 -5.15 16 21 C -0.15 -2.52 9.17 -41.41 -0.38 -2.90 16 22 C -0.07 -1.41 4.54 -105.44 -0.48 -1.88 16 23 C 0.13 2.35 4.32 -4.98 -0.02 2.33 16 24 N -0.52 -9.42 4.67 -252.73 -1.18 -10.60 16 25 C 0.03 0.41 9.33 60.07 0.56 0.97 16 26 C 0.03 0.53 9.57 60.06 0.57 1.10 16 27 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 30 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 31 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 32 H 0.11 2.69 5.94 -51.93 -0.31 2.38 16 33 H 0.07 1.74 7.33 -51.93 -0.38 1.36 16 34 H 0.28 6.59 8.32 -40.82 -0.34 6.25 16 35 H 0.14 2.03 8.06 -52.49 -0.42 1.60 16 36 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 38 H 0.09 1.81 6.78 -51.93 -0.35 1.46 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 41 H 0.07 1.16 6.71 -51.93 -0.35 0.81 16 42 H 0.07 1.18 8.12 -51.93 -0.42 0.75 16 43 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 44 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -28.68 376.77 -7.76 -36.44 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.19 Total: 7.53 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 1.22 Total: 7.38 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.82 Total: -41.89 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.64 Total: -31.44 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.02 Total: 12.86 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.98 Total: 3.45 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.68 -7.76 -36.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.341 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds