Wall clock time and date at job start Sat Apr 11 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47109 * 2 1 4 4 C 1.34230 * 117.00018 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00046 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47466 * 179.97438 * 7 6 4 9 9 C 1.38265 * 120.74022 * 89.99800 * 8 7 6 10 10 C 1.50697 * 120.36075 * 0.02562 * 9 8 7 11 11 N 1.32412 * 119.27477 * 179.97438 * 9 8 7 12 12 C 1.32556 * 120.87795 * 359.97438 * 11 9 8 13 13 S 1.76208 * 119.19131 * 180.02562 * 12 11 9 14 14 C 1.80997 * 99.99799 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46911 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.47009 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99857 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99873 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99807 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99908 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47309 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46923 * 120.00510 * 20 18 16 23 23 H 1.48500 * 109.47330 * 240.00404 * 20 18 16 24 24 N 1.32522 * 121.61691 * 0.02562 * 12 11 9 25 25 C 1.32750 * 120.63746 * 359.72848 * 24 12 11 26 26 O 1.35511 * 120.46401 * 180.26664 * 25 24 12 27 27 H 1.09005 * 109.47066 * 299.99718 * 1 2 3 28 28 H 1.08998 * 109.47698 * 59.99951 * 1 2 3 29 29 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46829 * 239.99566 * 2 1 3 31 31 H 1.08998 * 109.47230 * 120.00301 * 2 1 3 32 32 H 1.09002 * 109.47060 * 299.99765 * 6 4 3 33 33 H 1.09001 * 109.47380 * 59.99853 * 6 4 3 34 34 H 1.09002 * 109.47153 * 299.99998 * 7 6 4 35 35 H 1.08998 * 109.47533 * 59.99628 * 7 6 4 36 36 H 1.09003 * 109.47247 * 90.00205 * 10 9 8 37 37 H 1.09001 * 109.46965 * 209.99636 * 10 9 8 38 38 H 1.09000 * 109.47622 * 330.00040 * 10 9 8 39 39 H 1.09002 * 109.47263 * 299.99873 * 14 13 12 40 40 H 1.08997 * 109.47314 * 60.00010 * 14 13 12 41 41 H 1.09004 * 109.46988 * 299.99329 * 15 14 13 42 42 H 1.08998 * 109.47175 * 60.00209 * 15 14 13 43 43 H 0.97006 * 119.99675 * 179.97438 * 19 18 16 44 44 H 0.96704 * 113.99770 * 270.25649 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 6 6.0246 4.2498 -0.0002 9 6 6.2949 4.9029 1.1881 10 6 6.0171 4.2298 2.5075 11 7 6.8013 6.1259 1.1542 12 6 7.0511 6.7270 -0.0005 13 16 7.7259 8.3547 0.0062 14 6 7.8488 8.6513 -1.7751 15 6 8.4277 10.0460 -2.0211 16 6 8.5306 10.2927 -3.5043 17 1 8.2143 9.5311 -4.2017 18 6 9.0275 11.4912 -3.9709 19 7 9.4122 12.4187 -3.1218 20 14 9.1558 11.7967 -5.8093 21 1 8.6620 10.6049 -6.5448 22 1 8.3333 12.9783 -6.1732 23 1 10.5735 12.0500 -6.1713 24 7 6.8057 6.1338 -1.1599 25 6 6.3025 4.9059 -1.1984 26 8 6.0580 4.3006 -2.3859 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.5844 3.4700 -0.8895 33 1 3.5852 3.4690 0.8905 34 1 5.7846 2.3248 0.8896 35 1 5.7845 2.3255 -0.8903 36 1 6.8999 3.6750 2.8254 37 1 5.7730 4.9838 3.2558 38 1 5.1776 3.5436 2.3958 39 1 8.5019 7.9028 -2.2239 40 1 6.8577 8.5845 -2.2238 41 1 7.7748 10.7947 -1.5724 42 1 9.4189 10.1123 -1.5726 43 1 9.7622 13.2618 -3.4501 44 1 5.1709 4.4632 -2.7349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871693021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:03 Heat of formation + Delta-G solvation = -106.254297 kcal Electronic energy + Delta-G solvation = -26035.364073 eV Core-core repulsion = 22078.880964 eV Total energy + Delta-G solvation = -3956.483109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37389 -40.78946 -37.80680 -37.25639 -35.48718 -33.79038 -33.40231 -32.26570 -30.94858 -30.83275 -28.78512 -26.34991 -25.23035 -23.84217 -23.01175 -22.56234 -21.22811 -21.00316 -18.93729 -18.31734 -18.21291 -17.20471 -16.99233 -16.74701 -16.54040 -15.67519 -15.19932 -14.76149 -14.56051 -14.50689 -14.10009 -13.91641 -13.79327 -13.65722 -13.36750 -13.21826 -13.02349 -12.88562 -12.65825 -12.37725 -12.18394 -12.09529 -12.05173 -11.71913 -11.61693 -11.06669 -11.00230 -10.96607 -10.74801 -10.55959 -10.43676 -10.31495 -9.99129 -9.69807 -9.66402 -9.31410 -9.13845 -8.44730 -7.41761 -6.08462 -4.12426 0.61041 0.92395 1.57481 1.78049 2.21226 2.69011 3.28225 3.28905 3.35922 3.40564 3.56380 4.05549 4.14297 4.39395 4.41268 4.41555 4.46484 4.48180 4.58868 4.74566 4.77475 4.80937 4.95650 5.10847 5.21848 5.25975 5.27179 5.27732 5.38992 5.48043 5.56722 5.62896 5.72773 6.00193 6.01411 6.09734 6.22540 6.69477 6.83805 7.20201 7.31975 7.49134 7.55425 7.87446 7.88701 8.24369 8.92328 9.51740 11.02501 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.002036 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.883021 B =13748.544814 C =14823.115688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.505 6.505 6 C -0.110 4.110 7 C -0.051 4.051 8 C -0.236 4.236 9 C 0.206 3.794 10 C -0.108 4.108 11 N -0.512 5.512 12 C 0.329 3.671 13 S -0.006 6.006 14 C -0.083 4.083 15 C 0.033 3.967 16 C -0.517 4.517 17 H 0.061 0.939 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 N -0.542 5.542 25 C 0.383 3.617 26 O -0.472 6.472 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.262 0.738 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.749 -23.903 9.878 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.306 3.694 5 O -0.393 6.393 6 C -0.148 4.148 7 C -0.090 4.090 8 C -0.247 4.247 9 C 0.057 3.943 10 C -0.166 4.166 11 N -0.231 5.231 12 C -0.044 4.044 13 S 0.233 5.767 14 C -0.231 4.231 15 C -0.006 4.006 16 C -0.557 4.557 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 N -0.270 5.270 25 C 0.192 3.808 26 O -0.279 6.279 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -15.216 -22.541 10.819 29.270 hybrid contribution -0.985 -1.440 -2.306 2.891 sum -16.201 -23.981 8.513 30.167 Atomic orbital electron populations 1.21818 0.92498 1.03091 1.03657 1.23050 0.95473 0.80028 1.02708 1.86515 1.24594 1.32621 1.83982 1.23719 0.80566 0.92766 0.72321 1.90694 1.60359 1.43183 1.45019 1.21426 0.96192 0.90963 1.06203 1.20104 0.91321 0.91992 1.05561 1.21163 1.09798 1.00072 0.93627 1.21538 0.88556 0.89066 0.95173 1.20837 1.02947 1.00539 0.92231 1.68478 1.16089 1.10089 1.28451 1.25255 0.93851 1.00730 0.84598 1.86148 1.72790 1.02256 1.15462 1.24020 1.05478 1.05022 0.88627 1.19011 0.96646 0.87184 0.97784 1.21090 1.42875 1.00921 0.90824 0.92124 1.25010 0.95178 0.95974 0.98128 1.69974 1.42588 1.06405 1.34015 0.86443 0.77781 0.78240 0.85013 1.19624 1.20909 1.20887 1.68481 1.17740 1.10864 1.29928 1.19276 0.89590 0.86685 0.85239 1.84706 1.38795 1.69952 1.34464 0.91398 0.91376 0.90151 0.91128 0.91144 0.87721 0.87367 0.89358 0.88988 0.89306 0.89467 0.90162 0.89770 0.89819 0.95392 0.95393 0.92803 0.73595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 10.29 37.16 0.38 -0.22 16 2 C 0.06 0.37 6.19 37.16 0.23 0.60 16 3 O -0.36 -2.80 10.22 -39.26 -0.40 -3.21 16 4 C 0.46 3.86 7.96 36.01 0.29 4.14 16 5 O -0.51 -5.59 15.73 -18.75 -0.29 -5.88 16 6 C -0.11 -0.71 5.68 -27.88 -0.16 -0.86 16 7 C -0.05 -0.43 3.78 -27.89 -0.11 -0.53 16 8 C -0.24 -2.65 5.18 -104.18 -0.54 -3.19 16 9 C 0.21 2.49 6.82 -82.33 -0.56 1.92 16 10 C -0.11 -0.84 9.44 36.00 0.34 -0.50 16 11 N -0.51 -8.03 10.33 -9.73 -0.10 -8.13 16 12 C 0.33 5.78 7.85 -90.87 -0.71 5.07 16 13 S -0.01 -0.12 22.25 -107.50 -2.39 -2.51 16 14 C -0.08 -1.77 4.74 37.16 0.18 -1.59 16 15 C 0.03 0.84 4.98 -27.88 -0.14 0.71 16 16 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 20 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 N -0.54 -9.28 9.16 -13.50 -0.12 -9.40 16 25 C 0.38 5.24 7.80 -16.72 -0.13 5.11 16 26 O -0.47 -5.36 12.74 -18.23 -0.23 -5.59 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.11 0.55 7.47 -51.93 -0.39 0.16 16 34 H 0.09 0.69 6.76 -51.93 -0.35 0.34 16 35 H 0.09 0.86 7.57 -51.93 -0.39 0.47 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.44 6.03 -51.93 -0.31 0.13 16 39 H 0.08 1.83 8.11 -51.91 -0.42 1.41 16 40 H 0.08 1.77 8.11 -51.92 -0.42 1.34 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.41 2.51 9.06 45.56 0.41 2.93 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -34.46 390.42 -8.93 -43.39 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.64 Total: -2.89 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.34 Total: -2.47 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.51 Total: -43.09 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.93 Total: -14.68 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.39 Total: -2.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.46 -8.93 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871693021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.863 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds