Wall clock time and date at job start Sat Apr 11 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00491 * 2 1 4 4 O 1.20830 * 119.99825 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00254 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47497 * 180.02562 * 5 3 2 7 7 N 1.46502 * 109.47507 * 180.02562 * 6 5 3 8 8 C 1.36937 * 119.99397 * 269.99626 * 7 6 5 9 9 H 1.08007 * 120.00185 * 37.54365 * 8 7 6 10 10 C 1.38816 * 120.00024 * 217.53348 * 8 7 6 11 11 N 1.31617 * 119.99576 * 23.40758 * 10 8 7 12 12 Si 1.86798 * 120.00110 * 203.41122 * 10 8 7 13 13 H 1.48501 * 109.47058 * 59.99876 * 12 10 8 14 14 H 1.48501 * 109.47199 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47064 * 299.99728 * 12 10 8 16 16 C 1.46495 * 120.00062 * 89.99517 * 7 6 5 17 17 C 1.50701 * 109.47341 * 266.27852 * 16 7 6 18 18 C 1.33633 * 126.03320 * 89.97646 * 17 16 7 19 19 N 1.31782 * 114.49830 * 179.97438 * 18 17 16 20 20 C 1.29026 * 117.12370 * 0.02562 * 19 18 17 21 21 C 1.50701 * 124.91561 * 179.97438 * 20 19 18 22 22 H 1.08999 * 110.27766 * 164.32152 * 21 20 19 23 23 C 1.54940 * 110.31125 * 286.41336 * 21 20 19 24 24 C 1.55569 * 100.82795 * 155.40774 * 23 21 20 25 25 C 1.54384 * 102.27493 * 325.88031 * 24 23 21 26 26 O 1.43246 * 107.58640 * 21.35799 * 25 24 23 27 27 S 1.70966 * 110.16848 * 0.22213 * 20 19 18 28 28 H 1.09002 * 109.47412 * 59.99553 * 1 2 3 29 29 H 1.08998 * 109.47521 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46738 * 299.99936 * 1 2 3 31 31 H 1.09003 * 109.47453 * 60.00130 * 5 3 2 32 32 H 1.09002 * 109.47179 * 299.99719 * 5 3 2 33 33 H 1.09003 * 109.46833 * 59.99542 * 6 5 3 34 34 H 1.09004 * 109.47007 * 300.00029 * 6 5 3 35 35 H 0.96998 * 119.99608 * 180.02562 * 11 10 8 36 36 H 1.09002 * 109.46655 * 146.28155 * 16 7 6 37 37 H 1.09002 * 109.47103 * 26.28421 * 16 7 6 38 38 H 1.08002 * 122.75545 * 359.97438 * 18 17 16 39 39 H 1.09004 * 111.12934 * 273.37705 * 23 21 20 40 40 H 1.09002 * 111.12726 * 37.54032 * 23 21 20 41 41 H 1.09005 * 110.83874 * 207.68346 * 24 23 21 42 42 H 1.09000 * 110.83687 * 84.07829 * 24 23 21 43 43 H 1.08999 * 109.83231 * 261.84617 * 25 24 23 44 44 H 1.08994 * 109.90677 * 140.91257 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0003 2.7419 0.0002 7 7 5.4633 2.8185 -0.0010 8 6 6.1479 2.8534 1.1844 9 1 5.8066 2.2642 2.0228 10 6 7.2808 3.6461 1.3086 11 7 7.4494 4.6818 0.5142 12 14 8.5657 3.2426 2.6030 13 1 9.1056 1.8813 2.3571 14 1 9.6692 4.2338 2.5309 15 1 7.9436 3.2925 3.9505 16 6 6.1937 2.8577 -1.2703 17 6 6.5981 1.4594 -1.6606 18 6 5.8795 0.6113 -2.4023 19 7 6.4529 -0.5576 -2.6059 20 6 7.6150 -0.7429 -2.0768 21 6 8.4257 -2.0076 -2.1967 22 1 9.4603 -1.8218 -1.9084 23 6 7.8138 -3.1244 -1.3141 24 6 8.3354 -4.3941 -2.0461 25 6 8.3350 -3.9449 -3.5231 26 8 8.3655 -2.5129 -3.5400 27 16 8.0991 0.6516 -1.2142 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 3.9557 0.7808 -0.8908 32 1 3.9564 0.7804 0.8892 33 1 3.6109 3.2354 0.8906 34 1 3.6102 3.2366 -0.8893 35 1 8.2412 5.2355 0.6007 36 1 7.0846 3.4755 -1.1578 37 1 5.5538 3.2804 -2.0448 38 1 4.9084 0.8632 -2.8021 39 1 8.1950 -3.0723 -0.2942 40 1 6.7246 -3.0829 -1.3270 41 1 7.6573 -5.2343 -1.8960 42 1 9.3439 -4.6445 -1.7171 43 1 7.4314 -4.3013 -4.0178 44 1 9.2148 -4.3395 -4.0313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877709042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:06 Heat of formation + Delta-G solvation = -67.234251 kcal Electronic energy + Delta-G solvation = -27669.241787 eV Core-core repulsion = 23714.450714 eV Total energy + Delta-G solvation = -3954.791073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.15063 -39.72347 -38.55073 -36.57276 -35.85986 -32.27412 -32.23053 -31.61518 -30.24061 -28.80710 -27.45003 -25.71422 -24.67039 -23.75068 -22.12470 -21.70271 -21.27637 -20.04314 -18.80813 -17.86173 -17.34585 -16.85097 -16.35567 -16.27800 -16.12168 -15.82879 -14.93900 -14.86265 -14.33456 -14.20400 -13.87238 -13.69512 -13.49814 -13.22341 -13.12605 -13.01918 -12.77284 -12.18898 -12.07744 -11.83797 -11.65417 -11.50189 -11.44428 -11.27309 -11.15437 -10.96660 -10.90933 -10.67233 -10.62969 -10.30920 -10.19436 -10.14120 -10.04816 -9.63166 -8.98161 -8.72522 -8.52172 -8.13329 -6.89829 -6.04692 -3.59856 1.32693 1.95463 2.50226 2.52953 2.99643 3.25868 3.33010 3.34968 3.37016 3.98728 4.28408 4.32268 4.62535 4.76629 4.93098 5.06794 5.07788 5.11053 5.15070 5.16933 5.21017 5.45673 5.53661 5.56564 5.61778 5.64981 5.70030 5.75227 5.75687 5.82118 6.04703 6.07997 6.10381 6.17425 6.52357 6.54541 6.62840 6.77147 6.91191 6.97866 7.28631 7.63028 8.04397 8.25749 8.35714 8.90714 9.52336 10.09433 10.96540 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007272 B = 0.004944 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3849.594637 B = 5662.150387 C = 8436.721762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.513 6.513 5 C -0.138 4.138 6 C 0.161 3.839 7 N -0.565 5.565 8 C -0.269 4.269 9 H 0.064 0.936 10 C 0.023 3.977 11 N -0.874 5.874 12 Si 0.888 3.112 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.200 3.800 17 C -0.169 4.169 18 C -0.010 4.010 19 N -0.446 5.446 20 C -0.014 4.014 21 C 0.170 3.830 22 H 0.085 0.915 23 C -0.143 4.143 24 C -0.154 4.154 25 C 0.052 3.948 26 O -0.362 6.362 27 S 0.141 5.859 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.260 0.740 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.163 0.837 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -14.153 -3.826 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.400 6.400 5 C -0.179 4.179 6 C 0.034 3.966 7 N -0.282 5.282 8 C -0.399 4.399 9 H 0.082 0.918 10 C -0.179 4.179 11 N -0.514 5.514 12 Si 0.716 3.284 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.203 1.203 16 C 0.072 3.928 17 C -0.294 4.294 18 C -0.161 4.161 19 N -0.161 5.161 20 C -0.291 4.291 21 C 0.109 3.891 22 H 0.103 0.897 23 C -0.182 4.182 24 C -0.192 4.192 25 C -0.025 4.025 26 O -0.281 6.281 27 S 0.395 5.605 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.180 0.820 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.853 -13.698 -3.737 14.224 hybrid contribution -0.457 -0.276 0.501 0.732 sum -1.310 -13.974 -3.235 14.403 Atomic orbital electron populations 1.23172 0.77414 1.03094 1.02259 1.86573 1.22732 1.34551 1.84425 1.24374 0.92690 0.80818 0.71446 1.90630 1.67460 1.36302 1.45630 1.22449 0.84933 1.05009 1.05473 1.20729 0.84944 0.89672 1.01252 1.43792 0.99196 1.83206 1.01998 1.18975 1.08677 1.21426 0.90820 0.91812 1.25159 1.00749 0.94064 0.97938 1.70004 1.27818 1.13389 1.40163 0.86582 0.81518 0.78459 0.81806 1.20026 1.21243 1.20349 1.19697 0.99624 0.86528 0.86998 1.27725 0.95583 1.05707 1.00423 1.21470 1.02014 0.88801 1.03865 1.66032 1.08041 1.21686 1.20294 1.26478 0.97187 1.01139 1.04330 1.21167 0.96003 0.88679 0.83278 0.89699 1.23348 1.02627 0.92711 0.99484 1.23169 1.02248 0.98616 0.95190 1.23104 1.01441 0.81568 0.96425 1.88521 1.95240 1.19173 1.25198 1.84104 1.20871 1.06596 1.48962 0.92187 0.88637 0.92190 0.88291 0.88176 0.91731 0.93388 0.92957 0.87529 0.92475 0.82007 0.89505 0.89476 0.89894 0.90462 0.91344 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.55 10.56 -39.24 -0.41 -5.97 16 3 C 0.46 7.90 7.96 36.00 0.29 8.18 16 4 O -0.51 -9.80 15.73 -18.75 -0.30 -10.09 16 5 C -0.14 -2.41 6.13 -27.88 -0.17 -2.58 16 6 C 0.16 3.23 5.00 -4.04 -0.02 3.21 16 7 N -0.56 -12.66 2.41 -174.60 -0.42 -13.08 16 8 C -0.27 -6.65 9.42 -15.06 -0.14 -6.79 16 9 H 0.06 1.59 7.93 -52.48 -0.42 1.17 16 10 C 0.02 0.59 4.94 -17.43 -0.09 0.50 16 11 N -0.87 -23.04 11.55 55.49 0.64 -22.40 16 12 Si 0.89 19.96 29.61 -169.99 -5.03 14.92 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 16 C 0.20 4.27 5.90 -5.20 -0.03 4.24 16 17 C -0.17 -3.30 6.13 -35.92 -0.22 -3.52 16 18 C -0.01 -0.19 9.59 -19.19 -0.18 -0.37 16 19 N -0.45 -8.36 10.52 -11.87 -0.12 -8.49 16 20 C -0.01 -0.24 6.34 -13.46 -0.09 -0.33 16 21 C 0.17 2.44 3.95 -26.86 -0.11 2.33 16 22 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 23 C -0.14 -1.68 6.58 -24.34 -0.16 -1.84 16 24 C -0.15 -1.41 7.03 -24.64 -0.17 -1.58 16 25 C 0.05 0.56 7.80 37.88 0.30 0.85 16 26 O -0.36 -5.50 11.01 -35.23 -0.39 -5.89 16 27 S 0.14 2.61 23.18 -107.50 -2.49 0.11 16 28 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.66 8.13 -51.92 -0.42 0.24 16 31 H 0.10 1.70 5.83 -51.93 -0.30 1.40 16 32 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.06 1.38 8.00 -51.93 -0.42 0.97 16 34 H 0.05 0.94 7.82 -51.93 -0.41 0.54 16 35 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.11 2.57 5.58 -51.93 -0.29 2.28 16 37 H 0.06 1.14 7.85 -51.93 -0.41 0.73 16 38 H 0.16 2.72 7.63 -52.49 -0.40 2.32 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -29.37 381.62 -8.93 -38.30 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.42 Total: 3.07 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 0.27 Total: 3.76 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.09 Total: -43.97 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -1.10 Total: -21.95 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.49 Total: 0.11 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.37 -8.93 -38.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.939 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds