Wall clock time and date at job start Sat Apr 11 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00491 * 2 1 4 4 O 1.20830 * 119.99825 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00254 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47497 * 180.02562 * 5 3 2 7 7 N 1.46502 * 109.47507 * 180.02562 * 6 5 3 8 8 C 1.36937 * 119.99397 * 269.99626 * 7 6 5 9 9 H 1.08007 * 120.00185 * 37.54365 * 8 7 6 10 10 C 1.38816 * 120.00024 * 217.53348 * 8 7 6 11 11 N 1.31617 * 119.99576 * 23.40758 * 10 8 7 12 12 Si 1.86798 * 120.00110 * 203.41122 * 10 8 7 13 13 H 1.48501 * 109.47058 * 59.99876 * 12 10 8 14 14 H 1.48501 * 109.47199 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47064 * 299.99728 * 12 10 8 16 16 C 1.46495 * 120.00062 * 89.99517 * 7 6 5 17 17 C 1.50701 * 109.47341 * 266.27852 * 16 7 6 18 18 C 1.33633 * 126.03320 * 89.97646 * 17 16 7 19 19 N 1.31782 * 114.49830 * 179.97438 * 18 17 16 20 20 C 1.29026 * 117.12370 * 0.02562 * 19 18 17 21 21 C 1.50701 * 124.91561 * 179.97438 * 20 19 18 22 22 H 1.08999 * 110.27766 * 164.32152 * 21 20 19 23 23 C 1.54940 * 110.31125 * 286.41336 * 21 20 19 24 24 C 1.55569 * 100.82795 * 155.40774 * 23 21 20 25 25 C 1.54384 * 102.27493 * 325.88031 * 24 23 21 26 26 O 1.43246 * 107.58640 * 21.35799 * 25 24 23 27 27 S 1.70966 * 110.16848 * 0.22213 * 20 19 18 28 28 H 1.09002 * 109.47412 * 59.99553 * 1 2 3 29 29 H 1.08998 * 109.47521 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46738 * 299.99936 * 1 2 3 31 31 H 1.09003 * 109.47453 * 60.00130 * 5 3 2 32 32 H 1.09002 * 109.47179 * 299.99719 * 5 3 2 33 33 H 1.09003 * 109.46833 * 59.99542 * 6 5 3 34 34 H 1.09004 * 109.47007 * 300.00029 * 6 5 3 35 35 H 0.96998 * 119.99608 * 180.02562 * 11 10 8 36 36 H 1.09002 * 109.46655 * 146.28155 * 16 7 6 37 37 H 1.09002 * 109.47103 * 26.28421 * 16 7 6 38 38 H 1.08002 * 122.75545 * 359.97438 * 18 17 16 39 39 H 1.09004 * 111.12934 * 273.37705 * 23 21 20 40 40 H 1.09002 * 111.12726 * 37.54032 * 23 21 20 41 41 H 1.09005 * 110.83874 * 207.68346 * 24 23 21 42 42 H 1.09000 * 110.83687 * 84.07829 * 24 23 21 43 43 H 1.08999 * 109.83231 * 261.84617 * 25 24 23 44 44 H 1.08994 * 109.90677 * 140.91257 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0003 2.7419 0.0002 7 7 5.4633 2.8185 -0.0010 8 6 6.1479 2.8534 1.1844 9 1 5.8066 2.2642 2.0228 10 6 7.2808 3.6461 1.3086 11 7 7.4494 4.6818 0.5142 12 14 8.5657 3.2426 2.6030 13 1 9.1056 1.8813 2.3571 14 1 9.6692 4.2338 2.5309 15 1 7.9436 3.2925 3.9505 16 6 6.1937 2.8577 -1.2703 17 6 6.5981 1.4594 -1.6606 18 6 5.8795 0.6113 -2.4023 19 7 6.4529 -0.5576 -2.6059 20 6 7.6150 -0.7429 -2.0768 21 6 8.4257 -2.0076 -2.1967 22 1 9.4603 -1.8218 -1.9084 23 6 7.8138 -3.1244 -1.3141 24 6 8.3354 -4.3941 -2.0461 25 6 8.3350 -3.9449 -3.5231 26 8 8.3655 -2.5129 -3.5400 27 16 8.0991 0.6516 -1.2142 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 3.9557 0.7808 -0.8908 32 1 3.9564 0.7804 0.8892 33 1 3.6109 3.2354 0.8906 34 1 3.6102 3.2366 -0.8893 35 1 8.2412 5.2355 0.6007 36 1 7.0846 3.4755 -1.1578 37 1 5.5538 3.2804 -2.0448 38 1 4.9084 0.8632 -2.8021 39 1 8.1950 -3.0723 -0.2942 40 1 6.7246 -3.0829 -1.3270 41 1 7.6573 -5.2343 -1.8960 42 1 9.3439 -4.6445 -1.7171 43 1 7.4314 -4.3013 -4.0178 44 1 9.2148 -4.3395 -4.0313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877709042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:05 Heat of formation + Delta-G solvation = -83.749854 kcal Electronic energy + Delta-G solvation = -27669.957957 eV Core-core repulsion = 23714.450714 eV Total energy + Delta-G solvation = -3955.507243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48078 -40.92995 -39.80414 -38.05740 -37.35006 -34.03645 -33.32343 -32.87642 -31.64945 -30.15972 -28.57332 -27.21433 -26.21656 -25.15609 -23.35694 -22.82685 -22.54291 -21.50202 -20.21424 -19.21718 -18.80504 -18.42622 -17.58031 -17.55058 -17.31014 -16.91047 -16.64757 -16.15011 -15.82549 -15.49460 -15.40440 -15.07458 -14.74551 -14.58301 -14.33294 -14.22976 -14.07406 -13.67881 -13.27447 -13.22552 -12.90292 -12.75720 -12.70637 -12.68364 -12.51820 -12.42305 -12.24113 -12.08675 -11.87005 -11.79880 -11.73678 -11.72268 -11.55029 -10.65341 -10.58736 -10.41647 -10.03488 -9.58533 -8.72165 -7.92505 -5.51931 -0.11877 0.50705 1.02983 1.16582 1.46502 1.50867 1.55599 1.78178 1.94124 2.49907 2.94287 3.18919 3.22071 3.62774 3.63737 3.89215 3.96189 3.97499 4.14815 4.16284 4.23438 4.31486 4.33051 4.34991 4.44311 4.49162 4.52017 4.66057 4.70857 4.80485 4.85531 4.91585 4.93624 4.96629 5.02141 5.20192 5.24065 5.33798 5.39972 5.53977 5.68039 6.01518 6.38574 6.73227 6.90521 7.06530 7.70340 8.25690 9.06203 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007272 B = 0.004944 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3849.594637 B = 5662.150387 C = 8436.721762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.472 3.528 4 O -0.537 6.537 5 C -0.123 4.123 6 C 0.165 3.835 7 N -0.577 5.577 8 C -0.271 4.271 9 H 0.058 0.942 10 C -0.014 4.014 11 N -0.905 5.905 12 Si 0.933 3.067 13 H -0.267 1.267 14 H -0.291 1.291 15 H -0.276 1.276 16 C 0.210 3.790 17 C -0.190 4.190 18 C 0.003 3.997 19 N -0.466 5.466 20 C 0.007 3.993 21 C 0.160 3.840 22 H 0.103 0.897 23 C -0.141 4.141 24 C -0.141 4.141 25 C 0.042 3.958 26 O -0.392 6.392 27 S 0.129 5.871 28 H 0.062 0.938 29 H 0.132 0.868 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.256 0.744 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.177 0.823 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 -17.191 -3.954 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.163 4.163 6 C 0.039 3.961 7 N -0.296 5.296 8 C -0.401 4.401 9 H 0.076 0.924 10 C -0.213 4.213 11 N -0.547 5.547 12 Si 0.760 3.240 13 H -0.192 1.192 14 H -0.217 1.217 15 H -0.202 1.202 16 C 0.081 3.919 17 C -0.315 4.315 18 C -0.148 4.148 19 N -0.181 5.181 20 C -0.271 4.271 21 C 0.099 3.901 22 H 0.120 0.880 23 C -0.180 4.180 24 C -0.179 4.179 25 C -0.034 4.034 26 O -0.311 6.311 27 S 0.383 5.617 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.194 0.806 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.827 -16.772 -3.866 17.232 hybrid contribution -0.544 0.533 0.431 0.875 sum -1.371 -16.239 -3.435 16.655 Atomic orbital electron populations 1.23547 0.74957 1.05628 1.02511 1.86536 1.25064 1.33065 1.83801 1.24084 0.92357 0.81078 0.70901 1.90626 1.67904 1.37228 1.46922 1.22107 0.85727 1.02857 1.05619 1.20631 0.83888 0.91311 1.00289 1.43875 0.99975 1.83955 1.01792 1.19075 1.08774 1.20722 0.91562 0.92444 1.25661 1.02142 0.94023 0.99495 1.70105 1.28110 1.14503 1.41943 0.85869 0.79655 0.78341 0.80102 1.19191 1.21721 1.20197 1.19394 0.98466 0.87273 0.86725 1.27338 0.96717 1.05077 1.02334 1.21677 1.02166 0.88384 1.02533 1.66131 1.08807 1.21759 1.21369 1.27163 0.96579 1.01367 1.02038 1.21469 0.96507 0.88042 0.84043 0.87992 1.23344 1.01482 0.93086 1.00132 1.23167 1.03841 0.97656 0.93186 1.23369 1.02516 0.79498 0.98044 1.88482 1.95386 1.21750 1.25519 1.84082 1.20751 1.07376 1.49446 0.91911 0.85000 0.92058 0.87751 0.88343 0.93720 0.93286 0.93467 0.90308 0.91810 0.80594 0.88021 0.91262 0.88040 0.88317 0.91307 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.37 -10.52 10.56 -51.33 -0.54 -11.06 16 3 C 0.47 15.70 7.96 71.23 0.57 16.27 16 4 O -0.54 -20.34 15.73 21.95 0.35 -20.00 16 5 C -0.12 -4.25 6.13 29.85 0.18 -4.07 16 6 C 0.17 6.73 5.00 86.38 0.43 7.16 16 7 N -0.58 -26.38 2.41 -706.32 -1.70 -28.08 16 8 C -0.27 -13.62 9.42 84.03 0.79 -12.83 16 9 H 0.06 2.91 7.93 -2.91 -0.02 2.88 16 10 C -0.01 -0.70 4.94 84.86 0.42 -0.28 16 11 N -0.90 -49.04 11.55 21.65 0.25 -48.79 16 12 Si 0.93 41.23 29.61 68.60 2.03 43.27 16 13 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 14 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 C 0.21 9.13 5.90 85.63 0.51 9.63 16 17 C -0.19 -7.42 6.13 24.64 0.15 -7.27 16 18 C 0.00 0.12 9.59 83.65 0.80 0.92 16 19 N -0.47 -16.94 10.52 -191.46 -2.01 -18.96 16 20 C 0.01 0.22 6.34 88.52 0.56 0.78 16 21 C 0.16 4.27 3.95 30.51 0.12 4.39 16 22 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 23 C -0.14 -2.96 6.58 32.14 0.21 -2.75 16 24 C -0.14 -2.04 7.03 31.95 0.22 -1.82 16 25 C 0.04 0.79 7.80 72.45 0.56 1.35 16 26 O -0.39 -11.11 11.01 -148.98 -1.64 -12.75 16 27 S 0.13 4.72 23.18 -56.49 -1.31 3.41 16 28 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 29 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.25 8.13 -2.38 -0.02 1.23 16 31 H 0.10 3.51 5.83 -2.39 -0.01 3.49 16 32 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.04 1.97 8.00 -2.39 -0.02 1.95 16 34 H 0.05 1.96 7.82 -2.38 -0.02 1.94 16 35 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 36 H 0.08 3.93 5.58 -2.39 -0.01 3.92 16 37 H 0.06 2.60 7.85 -2.39 -0.02 2.58 16 38 H 0.18 5.71 7.63 -2.91 -0.02 5.69 16 39 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 40 H 0.07 1.71 8.05 -2.39 -0.02 1.69 16 41 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -63.79 381.62 3.15 -60.64 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.01 Total: 19.07 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 6.73 Total: 13.25 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -3.47 Total: -95.83 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.84 Total: -43.81 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.31 Total: 3.41 kcal Total: -63.79 3.15 -60.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.110 kcal (2) G-P(sol) polarization free energy of solvation -63.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds