Wall clock time and date at job start Sat Apr 11 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99584 * 2 1 4 4 O 1.20826 * 120.00307 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99796 * 179.97438 * 3 2 1 6 6 C 1.52991 * 109.47301 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47430 * 179.97438 * 6 5 3 8 8 C 1.36941 * 119.99812 * 270.00050 * 7 6 5 9 9 H 1.07997 * 120.00058 * 334.29701 * 8 7 6 10 10 C 1.38814 * 119.99781 * 154.29451 * 8 7 6 11 11 N 1.31619 * 120.00424 * 355.74908 * 10 8 7 12 12 Si 1.86803 * 119.99966 * 175.74234 * 10 8 7 13 13 H 1.48508 * 109.46750 * 60.00141 * 12 10 8 14 14 H 1.48495 * 109.47292 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47388 * 300.00520 * 12 10 8 16 16 C 1.46502 * 120.00250 * 89.99585 * 7 6 5 17 17 C 1.50698 * 109.46972 * 275.78902 * 16 7 6 18 18 O 1.21276 * 120.00272 * 359.97438 * 17 16 7 19 19 N 1.34776 * 119.99622 * 179.97438 * 17 16 7 20 20 C 1.46504 * 120.00066 * 359.97438 * 19 17 16 21 21 C 1.46504 * 120.00084 * 180.02562 * 19 17 16 22 22 C 1.50694 * 109.47206 * 89.99610 * 21 19 17 23 23 C 1.33392 * 125.20223 * 90.00689 * 22 21 19 24 24 C 1.38421 * 114.91925 * 179.97438 * 23 22 21 25 25 C 1.33388 * 114.92251 * 359.97438 * 24 23 22 26 26 S 1.75879 * 125.20063 * 269.69212 * 22 21 19 27 27 H 1.09002 * 109.47073 * 60.00122 * 1 2 3 28 28 H 1.08998 * 109.46664 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47104 * 299.99839 * 1 2 3 30 30 H 1.09001 * 109.47238 * 59.99666 * 5 3 2 31 31 H 1.09006 * 109.46975 * 299.99772 * 5 3 2 32 32 H 1.09001 * 109.47239 * 59.99676 * 6 5 3 33 33 H 1.09006 * 109.47447 * 299.99894 * 6 5 3 34 34 H 0.97001 * 120.00383 * 180.02562 * 11 10 8 35 35 H 1.08999 * 109.46958 * 155.79020 * 16 7 6 36 36 H 1.09000 * 109.47001 * 35.79063 * 16 7 6 37 37 H 1.09002 * 109.47276 * 269.99962 * 20 19 17 38 38 H 1.09001 * 109.47208 * 30.00680 * 20 19 17 39 39 H 1.09008 * 109.46748 * 149.99895 * 20 19 17 40 40 H 1.09001 * 109.46826 * 329.99518 * 21 19 17 41 41 H 1.09003 * 109.46852 * 210.00429 * 21 19 17 42 42 H 1.07999 * 122.53511 * 359.94982 * 23 22 21 43 43 H 1.08000 * 122.53978 * 180.02562 * 24 23 22 44 44 H 1.07998 * 125.20260 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4630 2.8189 0.0010 8 6 6.1457 2.8556 1.1875 9 1 5.6645 3.2373 2.0758 10 6 7.4564 2.4023 1.2485 11 7 8.0153 1.8601 0.1873 12 14 8.4270 2.5619 2.8365 13 1 7.7369 1.8108 3.9159 14 1 9.7903 2.0066 2.6414 15 1 8.5249 3.9945 3.2151 16 6 6.1957 2.8562 -1.2671 17 6 6.3971 1.4508 -1.7724 18 8 5.9710 0.5106 -1.1358 19 7 7.0506 1.2388 -2.9319 20 6 7.5648 2.3746 -3.7012 21 6 7.2460 -0.1274 -3.4235 22 6 6.0833 -0.5171 -4.2994 23 6 6.0165 -0.3272 -5.6181 24 6 4.8466 -0.7681 -6.2123 25 6 3.9636 -1.3165 -5.3763 26 16 4.6103 -1.2990 -3.7407 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.9564 0.7806 -0.8891 31 1 3.9557 0.7811 0.8909 32 1 3.6099 3.2368 0.8893 33 1 3.6107 3.2357 -0.8907 34 1 8.9310 1.5430 0.2300 35 1 7.1654 3.3292 -1.1126 36 1 5.6253 3.4274 -1.9996 37 1 6.8028 2.7124 -4.4037 38 1 7.8191 3.1882 -3.0220 39 1 8.4551 2.0681 -4.2505 40 1 7.3093 -0.8122 -2.5778 41 1 8.1690 -0.1772 -4.0011 42 1 6.8146 0.1358 -6.1794 43 1 4.6630 -0.6758 -7.2725 44 1 3.0007 -1.7141 -5.6609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879475582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:23 Heat of formation + Delta-G solvation = -47.611791 kcal Electronic energy + Delta-G solvation = -28654.657924 eV Core-core repulsion = 24700.717745 eV Total energy + Delta-G solvation = -3953.940179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.92505 -38.84110 -37.49067 -36.22884 -35.46384 -34.25516 -32.01532 -30.84888 -29.80929 -27.60913 -27.03410 -26.43020 -24.83031 -24.19481 -22.78107 -21.30729 -19.83302 -19.17601 -18.40192 -17.23619 -16.92481 -16.70544 -16.10202 -16.04325 -15.74196 -15.22657 -15.07549 -14.96613 -14.17809 -13.87291 -13.50238 -13.20564 -12.91438 -12.76599 -12.65750 -12.45449 -12.25020 -12.21868 -12.10046 -11.90817 -11.87074 -11.58367 -11.33293 -11.11225 -11.03445 -10.85101 -10.53323 -10.46546 -10.35657 -10.14020 -10.05842 -9.84991 -9.81512 -8.85140 -8.61558 -8.24808 -8.17756 -7.80881 -6.84187 -5.86778 -3.29757 1.20672 1.92943 2.33878 2.76982 2.89706 3.23419 3.37992 3.42117 3.43740 4.00033 4.17234 4.48798 5.12539 5.20195 5.25275 5.29143 5.33833 5.39043 5.40874 5.56413 5.64439 5.68688 5.71985 5.77997 5.93423 6.03236 6.03552 6.10493 6.16662 6.22118 6.35053 6.47068 6.55190 6.61356 6.73093 6.76142 6.83470 7.08513 7.15042 7.38757 7.72845 8.23785 8.31298 8.46394 9.11774 9.60904 9.78397 10.22321 11.22220 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007996 B = 0.005685 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.036059 B = 4924.240488 C = 7585.301353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.364 6.364 3 C 0.460 3.540 4 O -0.525 6.525 5 C -0.133 4.133 6 C 0.165 3.835 7 N -0.568 5.568 8 C -0.255 4.255 9 H 0.073 0.927 10 C 0.011 3.989 11 N -0.902 5.902 12 Si 0.912 3.088 13 H -0.284 1.284 14 H -0.292 1.292 15 H -0.284 1.284 16 C 0.168 3.832 17 C 0.535 3.465 18 O -0.522 6.522 19 N -0.626 5.626 20 C 0.092 3.908 21 C 0.188 3.812 22 C -0.176 4.176 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.238 4.238 26 S 0.139 5.861 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.255 0.745 35 H 0.108 0.892 36 H 0.031 0.969 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 -3.798 -11.549 13.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.281 6.281 3 C 0.305 3.695 4 O -0.414 6.414 5 C -0.173 4.173 6 C 0.037 3.963 7 N -0.287 5.287 8 C -0.384 4.384 9 H 0.091 0.909 10 C -0.187 4.187 11 N -0.546 5.546 12 Si 0.742 3.258 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.211 1.211 16 C 0.038 3.962 17 C 0.324 3.676 18 O -0.395 6.395 19 N -0.364 5.364 20 C -0.052 4.052 21 C 0.062 3.938 22 C -0.296 4.296 23 C -0.178 4.178 24 C -0.169 4.169 25 C -0.374 4.374 26 S 0.403 5.597 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.126 0.874 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.708 -4.515 -9.712 12.136 hybrid contribution 0.928 0.228 -0.761 1.222 sum -4.780 -4.287 -10.473 12.284 Atomic orbital electron populations 1.23131 0.78082 1.02851 1.01980 1.86627 1.22220 1.34853 1.84378 1.24951 0.93218 0.80581 0.70764 1.90580 1.67735 1.36417 1.46638 1.22682 0.83137 1.04362 1.07115 1.20750 0.84701 0.90815 1.00009 1.43844 0.99592 1.83119 1.02129 1.19197 0.95327 1.35538 0.88375 0.90894 1.25025 0.98551 0.97812 0.97360 1.69634 1.13775 1.43292 1.27942 0.86231 0.78896 0.77597 0.83086 1.21018 1.21751 1.21075 1.20620 0.98332 0.91069 0.86219 1.22005 0.74555 0.94212 0.76809 1.90445 1.49608 1.44740 1.54745 1.48116 1.60136 1.04318 1.23786 1.21564 0.97633 0.90010 0.95974 1.19604 0.91780 0.86372 0.96010 1.25281 1.01144 1.05388 0.97761 1.20030 0.99403 1.04677 0.93665 1.20064 0.94164 1.02090 1.00533 1.25728 1.04523 1.09654 0.97483 1.84851 1.10941 1.57006 1.06923 0.92456 0.88847 0.92381 0.86668 0.87895 0.92648 0.93809 0.93405 0.87437 0.95126 0.94232 0.90786 0.92617 0.89278 0.90207 0.84887 0.85093 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 101.05 1.07 1.50 16 2 O -0.36 -6.33 10.57 -39.26 -0.41 -6.75 16 3 C 0.46 8.92 7.96 36.01 0.29 9.21 16 4 O -0.52 -10.83 15.73 -18.75 -0.29 -11.13 16 5 C -0.13 -2.77 5.26 -27.89 -0.15 -2.92 16 6 C 0.16 3.55 4.99 -4.05 -0.02 3.53 16 7 N -0.57 -13.56 2.16 -174.61 -0.38 -13.93 16 8 C -0.26 -6.62 9.66 -15.06 -0.15 -6.77 16 9 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 10 C 0.01 0.28 5.21 -17.43 -0.09 0.19 16 11 N -0.90 -23.71 8.62 55.49 0.48 -23.23 16 12 Si 0.91 21.17 29.56 -169.99 -5.02 16.14 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.17 3.68 3.96 -5.19 -0.02 3.66 16 17 C 0.54 11.55 5.61 -10.99 -0.06 11.49 16 18 O -0.52 -12.70 12.44 5.56 0.07 -12.63 16 19 N -0.63 -11.11 2.86 -182.95 -0.52 -11.63 16 20 C 0.09 1.30 10.28 59.85 0.62 1.91 16 21 C 0.19 3.03 5.94 -5.19 -0.03 3.00 16 22 C -0.18 -2.67 6.09 -36.00 -0.22 -2.89 16 23 C -0.15 -1.92 10.05 -41.21 -0.41 -2.33 16 24 C -0.14 -1.69 10.18 -41.21 -0.42 -2.11 16 25 C -0.24 -3.06 11.23 29.04 0.33 -2.74 16 26 S 0.14 2.16 23.33 -107.50 -2.51 -0.35 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 30 H 0.12 2.56 5.74 -51.93 -0.30 2.26 16 31 H 0.10 2.31 8.14 -51.93 -0.42 1.89 16 32 H 0.06 1.21 7.99 -51.93 -0.42 0.79 16 33 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.11 2.52 5.78 -51.93 -0.30 2.22 16 36 H 0.03 0.61 7.94 -51.93 -0.41 0.20 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 1.09 6.44 -51.93 -0.33 0.76 16 39 H 0.06 0.65 7.89 -51.92 -0.41 0.24 16 40 H 0.09 1.67 7.42 -51.93 -0.39 1.28 16 41 H 0.08 1.07 7.89 -51.93 -0.41 0.66 16 42 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -30.54 379.58 -8.45 -38.99 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.30 Total: 4.05 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 0.73 Total: 14.75 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.42 Total: -48.80 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.64 Total: -30.51 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.51 Total: -0.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.54 -8.45 -38.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.617 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds