Wall clock time and date at job start Sat Apr 11 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99584 * 2 1 4 4 O 1.20826 * 120.00307 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99796 * 179.97438 * 3 2 1 6 6 C 1.52991 * 109.47301 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47430 * 179.97438 * 6 5 3 8 8 C 1.36941 * 119.99812 * 270.00050 * 7 6 5 9 9 H 1.07997 * 120.00058 * 334.29701 * 8 7 6 10 10 C 1.38814 * 119.99781 * 154.29451 * 8 7 6 11 11 N 1.31619 * 120.00424 * 355.74908 * 10 8 7 12 12 Si 1.86803 * 119.99966 * 175.74234 * 10 8 7 13 13 H 1.48508 * 109.46750 * 60.00141 * 12 10 8 14 14 H 1.48495 * 109.47292 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47388 * 300.00520 * 12 10 8 16 16 C 1.46502 * 120.00250 * 89.99585 * 7 6 5 17 17 C 1.50698 * 109.46972 * 275.78902 * 16 7 6 18 18 O 1.21276 * 120.00272 * 359.97438 * 17 16 7 19 19 N 1.34776 * 119.99622 * 179.97438 * 17 16 7 20 20 C 1.46504 * 120.00066 * 359.97438 * 19 17 16 21 21 C 1.46504 * 120.00084 * 180.02562 * 19 17 16 22 22 C 1.50694 * 109.47206 * 89.99610 * 21 19 17 23 23 C 1.33392 * 125.20223 * 90.00689 * 22 21 19 24 24 C 1.38421 * 114.91925 * 179.97438 * 23 22 21 25 25 C 1.33388 * 114.92251 * 359.97438 * 24 23 22 26 26 S 1.75879 * 125.20063 * 269.69212 * 22 21 19 27 27 H 1.09002 * 109.47073 * 60.00122 * 1 2 3 28 28 H 1.08998 * 109.46664 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47104 * 299.99839 * 1 2 3 30 30 H 1.09001 * 109.47238 * 59.99666 * 5 3 2 31 31 H 1.09006 * 109.46975 * 299.99772 * 5 3 2 32 32 H 1.09001 * 109.47239 * 59.99676 * 6 5 3 33 33 H 1.09006 * 109.47447 * 299.99894 * 6 5 3 34 34 H 0.97001 * 120.00383 * 180.02562 * 11 10 8 35 35 H 1.08999 * 109.46958 * 155.79020 * 16 7 6 36 36 H 1.09000 * 109.47001 * 35.79063 * 16 7 6 37 37 H 1.09002 * 109.47276 * 269.99962 * 20 19 17 38 38 H 1.09001 * 109.47208 * 30.00680 * 20 19 17 39 39 H 1.09008 * 109.46748 * 149.99895 * 20 19 17 40 40 H 1.09001 * 109.46826 * 329.99518 * 21 19 17 41 41 H 1.09003 * 109.46852 * 210.00429 * 21 19 17 42 42 H 1.07999 * 122.53511 * 359.94982 * 23 22 21 43 43 H 1.08000 * 122.53978 * 180.02562 * 24 23 22 44 44 H 1.07998 * 125.20260 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4630 2.8189 0.0010 8 6 6.1457 2.8556 1.1875 9 1 5.6645 3.2373 2.0758 10 6 7.4564 2.4023 1.2485 11 7 8.0153 1.8601 0.1873 12 14 8.4270 2.5619 2.8365 13 1 7.7369 1.8108 3.9159 14 1 9.7903 2.0066 2.6414 15 1 8.5249 3.9945 3.2151 16 6 6.1957 2.8562 -1.2671 17 6 6.3971 1.4508 -1.7724 18 8 5.9710 0.5106 -1.1358 19 7 7.0506 1.2388 -2.9319 20 6 7.5648 2.3746 -3.7012 21 6 7.2460 -0.1274 -3.4235 22 6 6.0833 -0.5171 -4.2994 23 6 6.0165 -0.3272 -5.6181 24 6 4.8466 -0.7681 -6.2123 25 6 3.9636 -1.3165 -5.3763 26 16 4.6103 -1.2990 -3.7407 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.9564 0.7806 -0.8891 31 1 3.9557 0.7811 0.8909 32 1 3.6099 3.2368 0.8893 33 1 3.6107 3.2357 -0.8907 34 1 8.9310 1.5430 0.2300 35 1 7.1654 3.3292 -1.1126 36 1 5.6253 3.4274 -1.9996 37 1 6.8028 2.7124 -4.4037 38 1 7.8191 3.1882 -3.0220 39 1 8.4551 2.0681 -4.2505 40 1 7.3093 -0.8122 -2.5778 41 1 8.1690 -0.1772 -4.0011 42 1 6.8146 0.1358 -6.1794 43 1 4.6630 -0.6758 -7.2725 44 1 3.0007 -1.7141 -5.6609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:22 Heat of formation + Delta-G solvation = -63.856896 kcal Electronic energy + Delta-G solvation = -28655.362364 eV Core-core repulsion = 24700.717745 eV Total energy + Delta-G solvation = -3954.644619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43879 -40.35182 -38.64810 -37.72751 -37.08690 -35.80119 -33.87778 -32.19964 -31.41415 -28.97360 -28.41077 -27.76275 -26.30641 -25.76063 -23.96880 -22.94541 -21.43484 -20.40438 -19.77960 -18.86286 -18.41517 -18.09762 -17.56918 -17.52750 -17.23105 -16.83379 -16.49522 -16.30462 -15.71873 -15.46479 -15.04270 -14.67229 -14.41161 -14.03411 -13.88283 -13.77777 -13.58547 -13.46870 -13.37033 -13.30242 -13.19699 -12.98878 -12.88267 -12.82055 -12.66355 -12.38819 -12.20059 -11.99111 -11.92756 -11.80432 -11.60140 -11.43970 -11.43523 -10.72384 -10.13568 -9.56893 -9.34947 -9.20537 -8.70251 -7.84013 -5.28261 0.15171 0.84247 1.19877 1.29498 1.49762 1.52272 1.56918 1.85631 1.89593 2.46652 2.56094 2.75956 3.38805 3.63216 4.01144 4.08266 4.13473 4.26034 4.29458 4.31013 4.33125 4.42878 4.54877 4.59052 4.65252 4.67028 4.77209 4.80674 4.83244 4.90689 5.00647 5.03633 5.06223 5.24263 5.28871 5.36352 5.44263 5.46943 5.67983 5.70582 6.03585 6.35918 6.76965 6.91667 7.19563 7.78870 8.09277 8.29734 9.21221 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007996 B = 0.005685 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.036059 B = 4924.240488 C = 7585.301353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.372 6.372 3 C 0.470 3.530 4 O -0.538 6.538 5 C -0.118 4.118 6 C 0.169 3.831 7 N -0.582 5.582 8 C -0.268 4.268 9 H 0.067 0.933 10 C -0.030 4.030 11 N -0.909 5.909 12 Si 0.966 3.034 13 H -0.290 1.290 14 H -0.296 1.296 15 H -0.276 1.276 16 C 0.169 3.831 17 C 0.533 3.467 18 O -0.557 6.557 19 N -0.626 5.626 20 C 0.088 3.912 21 C 0.193 3.807 22 C -0.194 4.194 23 C -0.129 4.129 24 C -0.138 4.138 25 C -0.225 4.225 26 S 0.060 5.940 27 H 0.063 0.937 28 H 0.130 0.870 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.247 0.753 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.110 0.890 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.369 -3.727 -13.966 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.315 3.685 4 O -0.428 6.428 5 C -0.158 4.158 6 C 0.042 3.958 7 N -0.302 5.302 8 C -0.398 4.398 9 H 0.085 0.915 10 C -0.227 4.227 11 N -0.554 5.554 12 Si 0.796 3.204 13 H -0.217 1.217 14 H -0.222 1.222 15 H -0.202 1.202 16 C 0.040 3.960 17 C 0.322 3.678 18 O -0.434 6.434 19 N -0.362 5.362 20 C -0.054 4.054 21 C 0.068 3.932 22 C -0.313 4.313 23 C -0.160 4.160 24 C -0.168 4.168 25 C -0.360 4.360 26 S 0.324 5.676 27 H 0.081 0.919 28 H 0.148 0.852 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.128 0.872 42 H 0.179 0.821 43 H 0.183 0.817 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.188 -4.438 -12.176 14.361 hybrid contribution 0.988 0.167 -0.130 1.010 sum -5.200 -4.271 -12.306 14.026 Atomic orbital electron populations 1.23540 0.75128 1.05523 1.02525 1.86581 1.25040 1.33405 1.83763 1.24400 0.92516 0.81026 0.70569 1.90568 1.67877 1.36946 1.47426 1.22298 0.84668 1.03403 1.05463 1.20689 0.83783 0.91206 1.00073 1.43948 1.00373 1.83612 1.02242 1.19344 0.95760 1.35561 0.89097 0.91509 1.25597 0.99333 0.98076 0.99651 1.69807 1.13205 1.43612 1.28751 0.85383 0.77278 0.77609 0.80174 1.21703 1.22193 1.20219 1.20586 0.97580 0.91818 0.86016 1.21776 0.74823 0.93429 0.77752 1.90429 1.51216 1.45465 1.56295 1.48043 1.58988 1.06097 1.23102 1.21759 0.99322 0.88554 0.95800 1.19566 0.93748 0.84585 0.95274 1.25082 1.00398 1.07450 0.98395 1.20400 1.00165 1.02734 0.92722 1.20458 0.93337 1.00919 1.02067 1.25991 1.05521 1.09296 0.95231 1.85145 1.13175 1.58862 1.10446 0.91855 0.85203 0.91926 0.87895 0.90114 0.93244 0.92838 0.94312 0.89131 0.93128 0.92379 0.91851 0.89690 0.92917 0.87180 0.82106 0.81669 0.80289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.37 -12.76 10.57 -51.41 -0.54 -13.30 16 3 C 0.47 18.33 7.96 71.24 0.57 18.90 16 4 O -0.54 -22.04 15.73 21.96 0.35 -21.69 16 5 C -0.12 -5.09 5.26 29.85 0.16 -4.94 16 6 C 0.17 7.48 4.99 86.38 0.43 7.91 16 7 N -0.58 -28.48 2.16 -706.35 -1.53 -30.01 16 8 C -0.27 -14.27 9.66 84.03 0.81 -13.45 16 9 H 0.07 3.55 7.83 -2.91 -0.02 3.52 16 10 C -0.03 -1.59 5.21 84.86 0.44 -1.14 16 11 N -0.91 -48.88 8.62 21.65 0.19 -48.69 16 12 Si 0.97 44.32 29.56 68.60 2.03 46.35 16 13 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 14 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 16 C 0.17 7.55 3.96 85.63 0.34 7.89 16 17 C 0.53 23.46 5.61 87.66 0.49 23.95 16 18 O -0.56 -28.24 12.44 -3.02 -0.04 -28.28 16 19 N -0.63 -21.94 2.86 -851.11 -2.43 -24.37 16 20 C 0.09 2.31 10.28 127.77 1.31 3.63 16 21 C 0.19 6.16 5.94 85.63 0.51 6.67 16 22 C -0.19 -5.68 6.09 24.59 0.15 -5.53 16 23 C -0.13 -2.95 10.05 21.22 0.21 -2.73 16 24 C -0.14 -2.86 10.18 21.22 0.22 -2.65 16 25 C -0.22 -5.28 11.23 66.72 0.75 -4.53 16 26 S 0.06 1.90 23.33 -56.49 -1.32 0.58 16 27 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 28 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 30 H 0.10 4.77 5.74 -2.39 -0.01 4.76 16 31 H 0.08 3.82 8.14 -2.38 -0.02 3.80 16 32 H 0.05 2.20 7.99 -2.39 -0.02 2.19 16 33 H 0.05 2.22 7.91 -2.38 -0.02 2.20 16 34 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 35 H 0.09 4.33 5.78 -2.39 -0.01 4.32 16 36 H 0.05 2.00 7.94 -2.39 -0.02 1.98 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.81 6.44 -2.39 -0.02 1.79 16 39 H 0.08 1.73 7.89 -2.38 -0.02 1.71 16 40 H 0.05 2.06 7.42 -2.39 -0.02 2.04 16 41 H 0.11 2.74 7.89 -2.39 -0.02 2.72 16 42 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 43 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.18 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -67.96 379.58 5.29 -62.67 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 1.00 Total: 20.95 kcal Atomic # 6 Polarization: 28.21 SS G_CDS: 7.59 Total: 35.80 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -3.77 Total: -103.08 kcal Atomic # 8 Polarization: -63.03 SS G_CDS: -0.24 Total: -63.27 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.32 Total: 0.58 kcal Total: -67.96 5.29 -62.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.186 kcal (2) G-P(sol) polarization free energy of solvation -67.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds